Guide to the Human Genome
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Name: FAM118B Sequence: fasta or formatted (351aa) NCBI GI: 13375721
Description:

hypothetical protein LOC79607

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         21           2
 C cysteine            1.4          5           1
 D aspartate           7.4         26           2
 E glutamate           7.7         27           2
 F phenylalanine       4.6         16           2
 G glycine             6.3         22           1
 H histidine           2.8         10           1
 I isoleucine          4.0         14           1
 K lysine              8.5         30           2
 L leucine            13.1         46           2
 M methionine          2.0          7           1
 N asparagine          3.4         12           1
 P proline             3.1         11           2
 Q glutamine           4.0         14           1
 R arginine            4.0         14           2
 S serine              7.1         25           2
 T threonine           5.1         18           2
 V valine              6.3         22           1
 W tryptophan          0.9          3           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79607 
FAM118A               0.416   hypothetical protein LOC55007 
FAM118A               0.416   hypothetical protein LOC55007 
API5                  0.012   apoptosis inhibitor 5 isoform a 
API5                  0.012   apoptosis inhibitor 5 isoform b 
EXPH5                 0.012   exophilin 5 isoform a 
TRIM5                 0.010   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.010   tripartite motif protein TRIM5 isoform gamma 
GOLGA4                0.010   golgi autoantigen, golgin subfamily a, 4 
TRIM5                 0.009   tripartite motif protein TRIM5 isoform alpha 
ATAD5                 0.007   ATPase family, AAA domain containing 5 
DIXDC1                0.007   DIX domain containing 1 isoform b 
DIXDC1                0.007   DIX domain containing 1 isoform a 
HMGXB3                0.007   HMG box domain containing 3 
TNPO3                 0.007   transportin 3 
GAPDHS                0.007   glyceraldehyde-3-phosphate dehydrogenase, spermatogen...
HIBADH                0.007   3-hydroxyisobutyrate dehydrogenase 
BNC1                  0.006   basonuclin 1 
HMCN1                 0.006   hemicentin 1 
CEP63                 0.006   centrosomal protein 63 isoform b 
CEP63                 0.006   centrosomal protein 63 isoform a 
SMC4                  0.004   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.004   SMC4 structural maintenance of chromosomes 4-like 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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