Guide to the Human Genome
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Name: CHN1 Sequence: fasta or formatted (459aa) NCBI GI: 4502813
Description:

chimerin (chimaerin) 1 isoform a

Referenced in:

Rho and Rac
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [433aa] chimerin (chimaerin) 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         27           2
 C cysteine            2.4         11           1
 D aspartate           5.9         27           1
 E glutamate           8.3         38           1
 F phenylalanine       3.3         15           1
 G glycine             4.8         22           1
 H histidine           3.7         17           1
 I isoleucine          6.1         28           2
 K lysine              7.0         32           2
 L leucine            10.5         48           2
 M methionine          3.3         15           1
 N asparagine          3.7         17           1
 P proline             4.8         22           2
 Q glutamine           2.8         13           2
 R arginine            6.3         29           2
 S serine              3.9         18           1
 T threonine           6.1         28           2
 V valine              5.4         25           2
 W tryptophan          0.7          3           1
 Y tyrosine            5.2         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chimerin (chimaerin) 1 isoform a 
CHN1                  0.929   chimerin (chimaerin) 1 isoform b 
CHN2                  0.738   beta chimerin isoform 2 
CHN2                  0.468   beta chimerin isoform 1 
ARHGAP27              0.124   Rho GTPase activating protein 27 isoform b 
ARHGAP27              0.124   Rho GTPase activating protein 27 isoform a 
SNX26                 0.121   sorting nexin 26 
MYO9A                 0.120   myosin IXA 
ARHGAP10              0.120   Rho GTPase activating protein 10 
ARHGAP21              0.119   Rho GTPase activating protein 21 
ARHGAP15              0.117   ARHGAP15 
ARHGAP23              0.113   Rho GTPase activating protein 23 
BCR                   0.113   breakpoint cluster region isoform 2 
BCR                   0.113   breakpoint cluster region isoform 1 
ARHGAP5               0.112   Rho GTPase activating protein 5 isoform a 
ARHGAP5               0.112   Rho GTPase activating protein 5 isoform b 
GMIP                  0.112   GEM interacting protein 
ARHGAP12              0.111   Rho GTPase activating protein 12 
ABR                   0.110   active breakpoint cluster region-related  protein i...
ABR                   0.110   active breakpoint cluster region-related  protein is...
ABR                   0.110   active breakpoint cluster region-related  protein is...
ARHGAP26              0.110   GTPase regulator associated with the focal adhesion...
ARHGAP26              0.110   GTPase regulator associated with the focal adhesion k...
GRLF1                 0.110   glucocorticoid receptor DNA binding factor 1 
RACGAP1               0.109   Rac GTPase activating protein 1 
RACGAP1               0.109   Rac GTPase activating protein 1 
RACGAP1               0.109   Rac GTPase activating protein 1 
CDGAP                 0.109   Cdc42 GTPase-activating protein 
MYO9B                 0.107   myosin IXB isoform 2 
MYO9B                 0.107   myosin IXB isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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