Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4759336
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759336 Fanconi anemia, complementation group G [Homo
sapiens]
(622 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759336 Fanconi anemia, complementation group G [Homo sapiens] 1233 0.0
gi|54607135 translocase of outer mitochondrial membrane 70 homol... 40 0.008
gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo s... 39 0.011
gi|110611917 tetratricopeptide repeat domain 14 isoform b [Homo ... 39 0.019
gi|90903231 huntingtin [Homo sapiens] 37 0.071
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens] 36 0.093
gi|239754717 PREDICTED: hypothetical protein [Homo sapiens] 35 0.16
gi|239749265 PREDICTED: hypothetical protein [Homo sapiens] 35 0.16
gi|239743362 PREDICTED: hypothetical protein XP_002342841 [Homo ... 35 0.16
gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 iso... 35 0.16
gi|48976061 acyl-Coenzyme A dehydrogenase family, member 10 isof... 35 0.16
gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo sap... 33 0.60
gi|148276998 zinc finger protein 628 [Homo sapiens] 33 0.78
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 33 1.0
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 33 1.0
gi|39725952 angiogenic factor VG5Q [Homo sapiens] 33 1.0
gi|4758646 kinesin family member 3B [Homo sapiens] 32 1.7
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 32 1.7
gi|4502105 annexin IV [Homo sapiens] 32 2.3
gi|15834617 excision repair cross-complementing rodent repair de... 31 3.0
gi|190570172 zinc finger protein 180 [Homo sapiens] 31 3.0
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 31 3.9
gi|22749211 transmembrane and tetratricopeptide repeat containin... 31 3.9
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 30 6.6
gi|27532984 protein inhibitor of activated STAT X isoform alpha ... 30 6.6
gi|56699458 protein inhibitor of activated STAT X isoform beta [... 30 6.6
gi|148612821 tetratricopeptide repeat domain 29 [Homo sapiens] 30 6.6
gi|18201913 forkhead box N1 [Homo sapiens] 30 6.6
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 30 8.7
gi|20149626 pleckstrin homology domain containing, family O memb... 30 8.7
>gi|4759336 Fanconi anemia, complementation group G [Homo sapiens]
Length = 622
Score = 1233 bits (3189), Expect = 0.0
Identities = 622/622 (100%), Positives = 622/622 (100%)
Query: 1 MSRQTTSVGSSCLDLWREKNDRLVRQAKVAQNSGLTLRRQQLAQDALEGLRGLLHSLQGL 60
MSRQTTSVGSSCLDLWREKNDRLVRQAKVAQNSGLTLRRQQLAQDALEGLRGLLHSLQGL
Sbjct: 1 MSRQTTSVGSSCLDLWREKNDRLVRQAKVAQNSGLTLRRQQLAQDALEGLRGLLHSLQGL 60
Query: 61 PAAVPVLPLELTVTCNFIILRASLAQGFTEDQAQDIQRSLERVLETQEQQGPRLEQGLRE 120
PAAVPVLPLELTVTCNFIILRASLAQGFTEDQAQDIQRSLERVLETQEQQGPRLEQGLRE
Sbjct: 61 PAAVPVLPLELTVTCNFIILRASLAQGFTEDQAQDIQRSLERVLETQEQQGPRLEQGLRE 120
Query: 121 LWDSVLRASCLLPELLSALHRLVGLQAALWLSADRLGDLALLLETLNGSQSGASKDLLLL 180
LWDSVLRASCLLPELLSALHRLVGLQAALWLSADRLGDLALLLETLNGSQSGASKDLLLL
Sbjct: 121 LWDSVLRASCLLPELLSALHRLVGLQAALWLSADRLGDLALLLETLNGSQSGASKDLLLL 180
Query: 181 LKTWSPPAEELDAPLTLQDAQGLKDVLLTAFAYRQGLQELITGNPDKALSSLHEAASGLC 240
LKTWSPPAEELDAPLTLQDAQGLKDVLLTAFAYRQGLQELITGNPDKALSSLHEAASGLC
Sbjct: 181 LKTWSPPAEELDAPLTLQDAQGLKDVLLTAFAYRQGLQELITGNPDKALSSLHEAASGLC 240
Query: 241 PRPVLVQVYTALGSCHRKMGNPQRALLYLVAALKEGSAWGPPLLEASRLYQQLGDTTAEL 300
PRPVLVQVYTALGSCHRKMGNPQRALLYLVAALKEGSAWGPPLLEASRLYQQLGDTTAEL
Sbjct: 241 PRPVLVQVYTALGSCHRKMGNPQRALLYLVAALKEGSAWGPPLLEASRLYQQLGDTTAEL 300
Query: 301 ESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLASPLHCGTQSQTKHILASRCLQTGRA 360
ESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLASPLHCGTQSQTKHILASRCLQTGRA
Sbjct: 301 ESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLASPLHCGTQSQTKHILASRCLQTGRA 360
Query: 361 GDAAEHYLDLLALLLDSSEPRFSPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTLCEEL 420
GDAAEHYLDLLALLLDSSEPRFSPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTLCEEL
Sbjct: 361 GDAAEHYLDLLALLLDSSEPRFSPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTLCEEL 420
Query: 421 LSRTSSLLPKMSRLWEDARKGTKELPYCPLWVSATHLLQGQAWVQLGAQKVAISEFSRCL 480
LSRTSSLLPKMSRLWEDARKGTKELPYCPLWVSATHLLQGQAWVQLGAQKVAISEFSRCL
Sbjct: 421 LSRTSSLLPKMSRLWEDARKGTKELPYCPLWVSATHLLQGQAWVQLGAQKVAISEFSRCL 480
Query: 481 ELLFRATPEEKEQGAAFNCEQGCKSDAALQQLRAAALISRGLEWVASGQDTKALQDFLLS 540
ELLFRATPEEKEQGAAFNCEQGCKSDAALQQLRAAALISRGLEWVASGQDTKALQDFLLS
Sbjct: 481 ELLFRATPEEKEQGAAFNCEQGCKSDAALQQLRAAALISRGLEWVASGQDTKALQDFLLS 540
Query: 541 VQMCPGNRDTYFHLLQTLKRLDRRDEATALWWRLEAQTKGSHEDALWSLPLYLESYLSWI 600
VQMCPGNRDTYFHLLQTLKRLDRRDEATALWWRLEAQTKGSHEDALWSLPLYLESYLSWI
Sbjct: 541 VQMCPGNRDTYFHLLQTLKRLDRRDEATALWWRLEAQTKGSHEDALWSLPLYLESYLSWI 600
Query: 601 RPSDRDAFLEEFRTSLPKSCDL 622
RPSDRDAFLEEFRTSLPKSCDL
Sbjct: 601 RPSDRDAFLEEFRTSLPKSCDL 622
>gi|54607135 translocase of outer mitochondrial membrane 70 homolog
A [Homo sapiens]
Length = 608
Score = 39.7 bits (91), Expect = 0.008
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 511 QLRAAALISRGLEWVASGQDTKALQDFLLSVQMCPGNRDTYFHLLQTLKRLDRRDEATA 569
+LRA ALI RG ++ Q + QDF ++ + P N D Y H Q LD+ +EA A
Sbjct: 364 KLRANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQNADVYHHRGQLKILLDQVEEAVA 422
>gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo
sapiens]
Length = 770
Score = 39.3 bits (90), Expect = 0.011
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 516 ALISRGLEWVASGQDTKALQDFLLSVQMCPGNRDTYFHLLQTLKRLDRRDEATALWWRLE 575
AL++RG + G KA++DF L+++ CP +R+ +L QTL + E + E
Sbjct: 343 ALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAE 402
Query: 576 A---------QTKGSHEDALWSLPLYLESYL 597
+ +T EDAL L Y++ L
Sbjct: 403 SYYKKALALDETFKDAEDALQKLHKYMQKSL 433
>gi|110611917 tetratricopeptide repeat domain 14 isoform b [Homo
sapiens]
Length = 439
Score = 38.5 bits (88), Expect = 0.019
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 516 ALISRGLEWVASGQDTKALQDFLLSVQMCPGNRDTYFHLLQTLKRLDRRDEATALWWRLE 575
AL++RG + G KA++DF L+++ CP +R+ +L QTL + E + E
Sbjct: 343 ALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAE 402
Query: 576 A---------QTKGSHEDALWSLPLYLE 594
+ +T EDAL L Y++
Sbjct: 403 SYYKKALALDETFKDAEDALQKLHKYMQ 430
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 36.6 bits (83), Expect = 0.071
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 374 LLDSSEPRFSPPPSPPGPCMPEVFL---EAAVALIQAGRAQDALTLCEELLSRTSSLLPK 430
LL +P PPP PPGP + E L + ++ + R LT+CE +++++ P+
Sbjct: 63 LLPQPQPPPPPPPPPPGPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSVRNSPE 122
Query: 431 MSRL 434
+L
Sbjct: 123 FQKL 126
>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
Length = 2481
Score = 36.2 bits (82), Expect = 0.093
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 197 LQDAQGLKDVLLTAFAYRQGLQELITGNPDKALSSLHEAASGLCPRPVLV---------- 246
L AQ L + A AYR GL GN +A+ SL +A R V+
Sbjct: 904 LSVAQSLNRMQDQAKAYR-GL-----GNGHRAMGSLQQALVCFEKRLVVAHELGEAFNKA 957
Query: 247 QVYTALGSCHRKMGNPQRAL------LYLVAALKEGSAWGPPLLEASRLYQQLG--DTTA 298
Q Y LGS H ++GN ++A+ L + +K+ + +YQQ+G DT
Sbjct: 958 QAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTAL 1017
Query: 299 ELESLELLV--EALNVPCSSKA 318
+ L+L + E N C +A
Sbjct: 1018 QYHQLDLQIAEETNNPTCQGRA 1039
>gi|239754717 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.16
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 312 VPCSSKAPQFLIEV--ELLLPPPDLASPLHCGTQSQTKHILASRCLQTGRAGDAAEHYLD 369
VP AP I++ L+ ++A+ +H G Q Q L + C++ YL
Sbjct: 6 VPSKWAAPTSFIKIPARLVAGKENIATLIHSGFQRQLSPSLQTPCIK----------YLQ 55
Query: 370 LLALLLDSSEPRFSPPPSPPGPCMPEVFL-----EAAVALIQAGRAQDALTLCEELLSRT 424
+ L+ P PPP PP P V + EAA A+ A A D + + + +
Sbjct: 56 VTCLVQPPPLPSLPPPP-PPAPRDGAVTVGIGVGEAAAAVAAAAPAPDVVAVVPGVAASA 114
Query: 425 SSLLPKMSR 433
++ P R
Sbjct: 115 ITVYPTQQR 123
>gi|239749265 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.16
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 312 VPCSSKAPQFLIEV--ELLLPPPDLASPLHCGTQSQTKHILASRCLQTGRAGDAAEHYLD 369
VP AP I++ L+ ++A+ +H G Q Q L + C++ YL
Sbjct: 6 VPSKWAAPTSFIKIPARLVAGKENIATLIHSGFQRQLSPSLQTPCIK----------YLQ 55
Query: 370 LLALLLDSSEPRFSPPPSPPGPCMPEVFL-----EAAVALIQAGRAQDALTLCEELLSRT 424
+ L+ P PPP PP P V + EAA A+ A A D + + + +
Sbjct: 56 VTCLVQPPPLPSLPPPP-PPAPRDGAVTVGIGVGEAAAAVAAAAPAPDVVAVVPGVAASA 114
Query: 425 SSLLPKMSR 433
++ P R
Sbjct: 115 ITVYPTQQR 123
>gi|239743362 PREDICTED: hypothetical protein XP_002342841 [Homo
sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.16
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 312 VPCSSKAPQFLIEV--ELLLPPPDLASPLHCGTQSQTKHILASRCLQTGRAGDAAEHYLD 369
VP AP I++ L+ ++A+ +H G Q Q L + C++ YL
Sbjct: 6 VPSKWAAPTSFIKIPARLVAGKENIATLIHSGFQRQLSPSLQTPCIK----------YLQ 55
Query: 370 LLALLLDSSEPRFSPPPSPPGPCMPEVFL-----EAAVALIQAGRAQDALTLCEELLSRT 424
+ L+ P PPP PP P V + EAA A+ A A D + + + +
Sbjct: 56 VTCLVQPPPLPSLPPPP-PPAPRDGAVTVGIGVGEAAAAVAAAAPAPDVVAVVPGVAASA 114
Query: 425 SSLLPKMSR 433
++ P R
Sbjct: 115 ITVYPTQQR 123
>gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 isoform
a [Homo sapiens]
Length = 1090
Score = 35.4 bits (80), Expect = 0.16
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 255 CHRKMGNPQRALLYLVAALKEGSAWGPPLLEASRLYQQLGDTTAELESLELLV 307
C R +G +RAL + A +K A+G PL+E + + + E+E LLV
Sbjct: 953 CMRLIGFSERALALMKARVKSRLAFGKPLVEQGTVLADIAQSRVEIEQARLLV 1005
>gi|48976061 acyl-Coenzyme A dehydrogenase family, member 10 isoform
b [Homo sapiens]
Length = 1059
Score = 35.4 bits (80), Expect = 0.16
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 255 CHRKMGNPQRALLYLVAALKEGSAWGPPLLEASRLYQQLGDTTAELESLELLV 307
C R +G +RAL + A +K A+G PL+E + + + E+E LLV
Sbjct: 922 CMRLIGFSERALALMKARVKSRLAFGKPLVEQGTVLADIAQSRVEIEQARLLV 974
>gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo
sapiens]
Length = 400
Score = 33.5 bits (75), Expect = 0.60
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 319 PQFLIEVELLLPPPDLASPLHCGTQSQTKHILASRCLQTGR------AGDAAEHYLDLLA 372
P ++ + LLLPP L PL G T+ L + CLQ R AA H+LD +
Sbjct: 11 PPVVLMLLLLLPPSPL--PLAAGDPLPTESRLMNSCLQARRKCQADPTCSAAYHHLD--S 66
Query: 373 LLLDSSEPRFSPPPSPPGPCM 393
S P S PS P C+
Sbjct: 67 CTSSISTPLPSEEPSVPADCL 87
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 33.1 bits (74), Expect = 0.78
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 378 SEPRFSPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTLCEELLSRTSSLLPKMSRLWED 437
S P PP PP P +PE+FL AA ++ D CE+ S LL D
Sbjct: 260 SPPAPPAPPPPPPPVVPELFLAAAETTVELVYRCDG---CEQGFSSEELLLEHQPCPGPD 316
Query: 438 ARKGTKELP 446
A +E P
Sbjct: 317 AAPQPQEAP 325
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 32.7 bits (73), Expect = 1.0
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 13/131 (9%)
Query: 331 PPDLASPLHCGTQSQTKHILASRCLQTGRAG-DAAEHYLDLLALLLDSSEPRFSPPPSPP 389
PP+ SP H Q HI S R+ +A E YL A LL +PPP PP
Sbjct: 1327 PPERHSPHHLKEQH---HIRGSITQGIPRSYVEAQEDYLRREAKLLKREG---TPPPPPP 1380
Query: 390 GPCMPEVFLEAAVALIQAGRAQDALTLCEELLSRTSSLLPKMSRLWEDARKGTKELPYCP 449
+ E + A+ ++ A + L + R+ +P+ + + T ELP P
Sbjct: 1381 SRDLTEAYKTQALGPLKLKPAHEGLVATVKEAGRSIHEIPR------EELRHTPELPLAP 1434
Query: 450 LWVSATHLLQG 460
+ + QG
Sbjct: 1435 RPLKEGSITQG 1445
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 32.7 bits (73), Expect = 1.0
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 13/131 (9%)
Query: 331 PPDLASPLHCGTQSQTKHILASRCLQTGRAG-DAAEHYLDLLALLLDSSEPRFSPPPSPP 389
PP+ SP H Q HI S R+ +A E YL A LL +PPP PP
Sbjct: 1343 PPERHSPHHLKEQH---HIRGSITQGIPRSYVEAQEDYLRREAKLLKREG---TPPPPPP 1396
Query: 390 GPCMPEVFLEAAVALIQAGRAQDALTLCEELLSRTSSLLPKMSRLWEDARKGTKELPYCP 449
+ E + A+ ++ A + L + R+ +P+ + + T ELP P
Sbjct: 1397 SRDLTEAYKTQALGPLKLKPAHEGLVATVKEAGRSIHEIPR------EELRHTPELPLAP 1450
Query: 450 LWVSATHLLQG 460
+ + QG
Sbjct: 1451 RPLKEGSITQG 1461
>gi|39725952 angiogenic factor VG5Q [Homo sapiens]
Length = 714
Score = 32.7 bits (73), Expect = 1.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 383 SPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTLCEELLSRTSSLLPKMSRLWEDARKGT 442
SPP SPP P PE E A + + + L C+ + LL RL+++A
Sbjct: 7 SPPRSPPPPTSPEP--ELAQLRRKVEKLERELRSCKRQVREIEKLLHHTERLYQNAESNN 64
Query: 443 KEL 445
+EL
Sbjct: 65 QEL 67
>gi|4758646 kinesin family member 3B [Homo sapiens]
Length = 747
Score = 32.0 bits (71), Expect = 1.7
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 14 DLWREKNDRLV--RQAKVAQNSGLTLRRQQLAQDA---LEGLRGLLHSLQGLPAAVPVLP 68
D WRE+ ++L ++A V +S + + +L ++ +E LR + + L A + +
Sbjct: 412 DYWREQQEKLEIEKRAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKDAAEMLGAKIKAME 471
Query: 69 LELTVTCNFIILRASLAQGFTEDQAQDIQRSLERVLETQEQQGPRLEQGL 118
+L V I+ + Q E + Q+I R E Q+Q R E+ L
Sbjct: 472 SKLLVGGKNIVDHTNEQQKILEQKRQEIAEQKRREREIQQQMESRDEETL 521
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 32.0 bits (71), Expect = 1.7
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 187 PAEELDAPLTL--QDAQGLKDVLLTAFAYRQGLQELITGNPDKALSSL---HEAASGLCP 241
P+ E +PL + +D + + VL+TA A + L++G +A+SSL A+ G P
Sbjct: 224 PSSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSAVASGGTSP 283
Query: 242 RPVLVQ 247
+P Q
Sbjct: 284 QPTSTQ 289
>gi|4502105 annexin IV [Homo sapiens]
Length = 321
Score = 31.6 bits (70), Expect = 2.3
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 30/147 (20%)
Query: 468 AQKVAISEFSRCLELLFRATPEE-------KEQGAAFNCEQGCKSDAALQQLRAAALISR 520
A K A ++ +E+L TPEE +Q + E +SD + R +S
Sbjct: 100 AMKGAGTDEGCLIEILASRTPEEIRRISQTYQQQYGRSLEDDIRSDTSFMFQRVLVSLSA 159
Query: 521 G-------LEWVASGQDTKALQDF-----------LLSVQMCPGNRDTYFHLLQTLKRLD 562
G L+ QD + L + L+V +C NR+ H+ KR+
Sbjct: 160 GGRDEGNYLDDALVRQDAQDLYEAGEKKWGTDEVKFLTV-LCSRNRNHLLHVFDEYKRIS 218
Query: 563 RRDEATALWWRLEAQTKGSHEDALWSL 589
++D + ++++T GS EDAL ++
Sbjct: 219 QKD----IEQSIKSETSGSFEDALLAI 241
>gi|15834617 excision repair cross-complementing rodent repair
deficiency, complementation group 2 protein isoform 1
[Homo sapiens]
Length = 760
Score = 31.2 bits (69), Expect = 3.0
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 16 WREKNDRLVRQAKVAQNSGLTLR---RQQLAQDALEGLRGLLHSLQGLPAAVPVLPLELT 72
WR + +V+++ A SGL R +++ + E LR LLH+L+ + PL T
Sbjct: 342 WRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLE-ITDLADFSPL--T 398
Query: 73 VTCNFIILRASLAQGFT 89
+ NF L ++ A+GFT
Sbjct: 399 LLANFATLVSTYAKGFT 415
>gi|190570172 zinc finger protein 180 [Homo sapiens]
Length = 692
Score = 31.2 bits (69), Expect = 3.0
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 357 TGRAGDAAEHYLDLLALLLDSSEPRFSPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTL 416
T AG A+ L L L +S E + PP PP C + FL + + G +LT+
Sbjct: 8 TREAGSGAQD-LSTLLCLEESMEEQDEKPPEPPKACAQDSFLPQEIIIKVEGEDTGSLTI 66
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 30.8 bits (68), Expect = 3.9
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 335 ASPLHCGTQSQTKHILASRCLQTGRAGDAAEHYLDLLALLLDSSEPRFS---PPPSPPGP 391
ASP + S + +S A AA LL + PRFS PPP PPG
Sbjct: 118 ASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLL--AGLPRFSSLSPPPPPPG- 174
Query: 392 CMPEVFLEAAVALIQAGRAQDALTLCEELLSRTSSLLP--KMSRLWEDAR 439
F +A A+ GR L EL RT P S W DAR
Sbjct: 175 ---LYFSPSAAAVAAVGRYPKPLA---ELPGRTPIFWPGVMQSPPWRDAR 218
>gi|22749211 transmembrane and tetratricopeptide repeat containing 2
[Homo sapiens]
Length = 836
Score = 30.8 bits (68), Expect = 3.9
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 208 LTAFAYRQGLQELITGNPDKALSSLHEAASGLCPRPVLVQ-VYTALGSCHRKMGNPQRAL 266
+T+ Y G G+ ++ALS EA + PR Q +Y +G + ++ A
Sbjct: 605 VTSCLYNLGKLYHEQGHYEEALSVYKEAIQKM-PRQFAPQSLYNMMGEAYMRLSKLPEAE 663
Query: 267 LYLVAALKEGSAWGPPLLEASRLYQQLGDTTAELESLELLVEALNVP-----CSSKAPQF 321
+ + +L+ + P L +L L T + E+ +L ++A+ + C QF
Sbjct: 664 HWYMESLRSKTDHIPAHLTYGKL---LALTGRKSEAEKLFLKAIELDPTKGNCYMHYGQF 720
Query: 322 LIEVELLLPPPDLASPLHCGTQSQTKHIL-ASRCLQTGRAGDAAEHYLDLLALL 374
L+E L+ ++A ++ + A+ L+ +AAE Y DL A L
Sbjct: 721 LLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARL 774
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 30.0 bits (66), Expect = 6.6
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 142 LVGLQAALWLSADRLGDLALLLETLNGSQSGASKDLLLLLKTWSPPAEELDAPLTLQDAQ 201
L+ ++ +L + +GD A E + G + D+ W P ++L+ P T D++
Sbjct: 1299 LLRVRMLYYLRQEVIGDQA---EKVLGGAIASEIDI------WFPVVDQLEVPTTWWDSE 1349
Query: 202 GLKDVLLTAFAYRQGLQELITGNPDKALSSLHEA 235
K +L+ F + G ++ T D AL L +A
Sbjct: 1350 ADKSLLIGVF--KHGYEKYNTMRADPALCFLEKA 1381
>gi|27532984 protein inhibitor of activated STAT X isoform alpha
[Homo sapiens]
Length = 572
Score = 30.0 bits (66), Expect = 6.6
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 151 LSADRLGDLALLLETLNGSQSGASKDLLL----LLKTWSPPAEELDA--------PLTLQ 198
+S+ R+ +L +LL ++SG DLL+ LLK+ PA ++ P TL+
Sbjct: 11 VSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTLE 70
Query: 199 DAQGLKDVLLTAFAYRQGLQELITGNPDKALSSLHEAAS 237
L + + F+ G + PD A++ +H S
Sbjct: 71 GLSDLSTIKSSVFSLDGGSSPV---EPDLAVAGIHSLPS 106
>gi|56699458 protein inhibitor of activated STAT X isoform beta
[Homo sapiens]
Length = 621
Score = 30.0 bits (66), Expect = 6.6
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 151 LSADRLGDLALLLETLNGSQSGASKDLLL----LLKTWSPPAEELDA--------PLTLQ 198
+S+ R+ +L +LL ++SG DLL+ LLK+ PA ++ P TL+
Sbjct: 11 VSSFRVSELQVLLGFAGRNKSGRKHDLLMRALHLLKSGCSPAVQIKIRELYRRRYPRTLE 70
Query: 199 DAQGLKDVLLTAFAYRQGLQELITGNPDKALSSLHEAAS 237
L + + F+ G + PD A++ +H S
Sbjct: 71 GLSDLSTIKSSVFSLDGGSSPV---EPDLAVAGIHSLPS 106
>gi|148612821 tetratricopeptide repeat domain 29 [Homo sapiens]
Length = 475
Score = 30.0 bits (66), Expect = 6.6
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 285 EASRLYQQLGDTTAELESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLAS 336
+AS +QQ DTT EL S+ L+ E +KA Q ++ V + DL S
Sbjct: 372 KASECFQQAFDTTVELMSMPLMDETKVHYGIAKAHQMMLTVNNYIESADLTS 423
>gi|18201913 forkhead box N1 [Homo sapiens]
Length = 648
Score = 30.0 bits (66), Expect = 6.6
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 289 LYQQLGDTTAELESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLASPLHCGTQSQTKH 348
L++QL D + L+ L L+ + P SS P PPP P C T++ +
Sbjct: 545 LWEQLKDDSLALDPLVLVTSS---PTSSSMPP-------PQPPPHCFPPGPCLTETGSG- 593
Query: 349 ILASRCLQTGRAGDAAEHYLDLLALLLDSSEPRFSPPPSPPGP 391
A G G A L L L E +PP +P GP
Sbjct: 594 --AGDLAAPGSGGSGALGDLHLTTLYSAFMELEPTPPTAPAGP 634
>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
sapiens]
Length = 2923
Score = 29.6 bits (65), Expect = 8.7
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 25/106 (23%)
Query: 309 ALNVPCSSKAPQFLIEVELLLPPP---DLASPLH-------------------CGTQSQT 346
A VP + P L+ + LLLPPP D P C + +
Sbjct: 5 ATGVPLPTPPPPLLLLLLLLLPPPLLGDQVGPCRSLGSRGRGSSGACAPMGWLCPSSASN 64
Query: 347 KHILASRCLQTGR--AGDAAEHYLDLLALLLDSSEPRFSPPPSPPG 390
+ SRC G G H+ D L + SE PP+P G
Sbjct: 65 LWLYTSRCRDAGTELTGHLVPHH-DGLRVWCPESEAHIPLPPAPEG 109
>gi|20149626 pleckstrin homology domain containing, family O member
1 [Homo sapiens]
Length = 409
Score = 29.6 bits (65), Expect = 8.7
Identities = 49/196 (25%), Positives = 70/196 (35%), Gaps = 26/196 (13%)
Query: 301 ESLELLVEALNVPCSSKAPQFLIEVE------LLLPPPDLASPLHCGTQSQTKHILASRC 354
E E + ALN + + L EV L P D A H H++A
Sbjct: 118 EEKESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVAS 177
Query: 355 LQTGRAGDAAEHYLDLLALLLDSSEPRFSPPPSPPGPCMPE--VFLEAAVALIQAGRAQD 412
T +L L L E P P P C V L+ +VA + R +
Sbjct: 178 TSTSDG---------MLTLDLIQEE---DPSPEEPTSCAESFRVDLDKSVAQLAGSRRRA 225
Query: 413 ALTLCEELLSRTSSLLPKMSRLWEDARKGTKELPYCPLWVSATHLLQGQAWVQLGAQKVA 472
+ R SSL SR WE KG P P ++ T + + ++ +Q+ A
Sbjct: 226 DSDRIQPSADRASSL----SRPWEKTDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDA 281
Query: 473 ISEFSRCLELLFRATP 488
S +R L+L P
Sbjct: 282 AS--ARTLQLRAEEPP 295
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,833,089
Number of Sequences: 37866
Number of extensions: 1119511
Number of successful extensions: 5597
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5571
Number of HSP's gapped (non-prelim): 52
length of query: 622
length of database: 18,247,518
effective HSP length: 108
effective length of query: 514
effective length of database: 14,157,990
effective search space: 7277206860
effective search space used: 7277206860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.