Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4759156
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s... 574 e-164
gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Hom... 292 2e-79
gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo... 292 2e-79
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 68 1e-11
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 56 3e-08
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 56 3e-08
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 56 3e-08
gi|52485606 formin-like 2 [Homo sapiens] 52 8e-07
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 51 1e-06
gi|7706501 WW domain binding protein 11 [Homo sapiens] 50 2e-06
gi|40538732 RNA-binding region (RNP1, RRM) containing 3 [Homo sa... 50 2e-06
gi|157168329 formin 1 [Homo sapiens] 50 3e-06
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 50 3e-06
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 50 3e-06
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 50 3e-06
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 50 3e-06
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 50 3e-06
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 50 3e-06
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 49 4e-06
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 49 4e-06
gi|4758216 dishevelled 2 [Homo sapiens] 49 5e-06
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 49 5e-06
gi|146134388 YLP motif containing 1 [Homo sapiens] 49 6e-06
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 48 8e-06
gi|72534686 Huntingtin interacting protein C isoform 1 [Homo sap... 48 8e-06
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 48 1e-05
gi|7706326 splicing factor 3B, 14 kDa subunit [Homo sapiens] 47 1e-05
gi|29789008 Huntingtin interacting protein C isoform 2 [Homo sap... 47 1e-05
gi|241982780 programmed cell death 6 interacting protein isoform... 47 2e-05
gi|22027538 programmed cell death 6 interacting protein isoform ... 47 2e-05
>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
Length = 282
Score = 574 bits (1479), Expect = e-164
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60
MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60
Query: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA 120
EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA 120
Query: 121 TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI 180
TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI
Sbjct: 121 TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI 180
Query: 181 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240
PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV
Sbjct: 181 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240
Query: 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
Sbjct: 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 292 bits (748), Expect = 2e-79
Identities = 155/278 (55%), Positives = 189/278 (67%), Gaps = 54/278 (19%)
Query: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
+ RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+ +++KMRGQAFVIFKE+ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
+TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF ++++K+EK+K K+ E AT
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 125 VQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
+ G TP QG P +P PP
Sbjct: 122 KKPGQGTPNSANTQGNSTPNP----------QVPDYPP---------------------- 149
Query: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
N+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRH
Sbjct: 150 ----------------------NYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRH 187
Query: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
DIAFVEF+N+ QAGAARDALQGFKIT ++AMKI++AKK
Sbjct: 188 DIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
Score = 33.1 bits (74), Expect = 0.28
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 3 VPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEV 62
VP+ PN+ +++NNL E+ + L +F+QF ++ + AFV F+
Sbjct: 144 VPDYPPNYILFLNNLPEETN----EMMLSMLFNQFPGFKEVRLVPG--RHDIAFVEFEND 197
Query: 63 SSATNALRSMQGFPFY-DKPMRIQYAK 88
A A ++QGF M+I YAK
Sbjct: 198 GQAGAARDALQGFKITPSHAMKITYAK 224
>gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 292 bits (748), Expect = 2e-79
Identities = 155/278 (55%), Positives = 189/278 (67%), Gaps = 54/278 (19%)
Query: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
+ RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+ +++KMRGQAFVIFKE+ S
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKA 124
+TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF ++++K+EK+K K+ E AT
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 125 VQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGA 184
+ G TP QG P +P PP
Sbjct: 122 KKPGQGTPNSANTQGNSTPNP----------QVPDYPP---------------------- 149
Query: 185 MPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
N+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRH
Sbjct: 150 ----------------------NYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRH 187
Query: 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
DIAFVEF+N+ QAGAARDALQGFKIT ++AMKI++AKK
Sbjct: 188 DIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
Score = 33.1 bits (74), Expect = 0.28
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 3 VPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEV 62
VP+ PN+ +++NNL E+ + L +F+QF ++ + AFV F+
Sbjct: 144 VPDYPPNYILFLNNLPEETN----EMMLSMLFNQFPGFKEVRLVPG--RHDIAFVEFEND 197
Query: 63 SSATNALRSMQGFPFY-DKPMRIQYAK 88
A A ++QGF M+I YAK
Sbjct: 198 GQAGAARDALQGFKITPSHAMKITYAK 224
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 67.8 bits (164), Expect = 1e-11
Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 30/202 (14%)
Query: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDI-LVSRSL---KMRGQAFVIFKEVSSATN 67
I+I NL+ +I + K LY FS FG IL + R +G AF+ F ++
Sbjct: 102 IFIGNLDPEIDE----KLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDA 157
Query: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQG 127
A+ +M G ++P+ + YA ++D K E+ ++ A + +
Sbjct: 158 AIEAMNGQYLCNRPITVSYA--------------FKKDSKGERHGSAAERLLAAQNPLSQ 203
Query: 128 GGATPVVGAVQGPVPGMP-PMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPG--- 183
+ A P P P P+ + + +P PP MPPPG PPP PG +PPG
Sbjct: 204 ADRPHQLFADAPPPPSAPNPVVSS--LGSGLP--PPGMPPPGSFPPPVPPPGALPPGIPP 259
Query: 184 AMPPQQLMPGQMPPAQPLSENP 205
AMPP + PG P + P
Sbjct: 260 AMPPPPMPPGAAGHGPPSAGTP 281
Score = 43.9 bits (102), Expect = 2e-04
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 116 QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGL 175
Q P + G P+ +GP G P P H M G PP MPP G PP
Sbjct: 332 QPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRP 391
Query: 176 APGQIPPGAMPPQQLMP-GQMPPAQPL 201
P G +PP + P +PP PL
Sbjct: 392 PPYGYQRGPLPPPRPTPRPPVPPRGPL 418
Score = 41.6 bits (96), Expect = 8e-04
Identities = 30/74 (40%), Positives = 33/74 (44%), Gaps = 21/74 (28%)
Query: 140 PVPGMPPMTQAPRIMHHMP--------------GQPPYMPPPGMIPPPGLAPGQIPPGAM 185
P PGM M ++ HH P GQPP PPPGM P PG P +PP
Sbjct: 302 PHPGMSQM----QLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGM-PHPGPPPMGMPPRGP 356
Query: 186 PPQQLM--PGQMPP 197
P M PG MPP
Sbjct: 357 PFGSPMGHPGPMPP 370
Score = 35.4 bits (80), Expect = 0.057
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 3 VPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL---KMRGQAFVIF 59
+ E + T+Y+ L+EK+ + L+ +F Q G +++ + + + +G FV F
Sbjct: 6 ISERNQDATVYVGGLDEKVSEP----LLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 60 KEVSSATNALRSMQGFPFYDKPMRIQYA 87
A A++ M Y KP+R+ A
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVNKA 89
Score = 34.7 bits (78), Expect = 0.097
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 128 GGATPVVGAVQGPVPGMPPMTQAPR------IMHHMPGQPP---YMPPPGMIPPPGLAPG 178
GG P P PG PPM PR M H PP PPP ++PP G
Sbjct: 330 GGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPP-LMPPHGYT-- 386
Query: 179 QIPPGAMPPQQLMPGQMPPAQPLSENP 205
P PP G +PP +P P
Sbjct: 387 --GPPRPPPYGYQRGPLPPPRPTPRPP 411
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 56.2 bits (134), Expect = 3e-08
Identities = 67/263 (25%), Positives = 103/263 (39%), Gaps = 72/263 (27%)
Query: 4 PETRP--NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKE 61
PET + T+++ L+++ + ++ ++ +FG I I + RG A+++
Sbjct: 500 PETASVCSTTLWVGQLDKRTTQQDVA----SLLEEFGPIESI---NMIPPRGCAYIVMVH 552
Query: 62 VSSATNALRSMQ--GFPFYDKPMRIQYAKTDSDIIAKMKG--------TFVERDRKREKR 111
A AL+ + + K ++I +A + I A K T++ D K
Sbjct: 553 RQDAYRALQKLSRGNYKVNQKSIKIAWA-LNKGIKADYKQYWDVELGVTYIPWD----KV 607
Query: 112 KPKSQET----------------------PATKKAVQGGGAT-------PVVGAVQGPVP 142
KP+ E+ P + A GG T P+ + PVP
Sbjct: 608 KPEELESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVP 667
Query: 143 GMP---PMT-QAPRIMHHMPG-------QPPYMPPPGMIPPPGLAPGQIPPGAMP----- 186
+P P+T P++ H PG QPP PP IPPPG PG PP P
Sbjct: 668 PIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRP 727
Query: 187 ---PQQLMPGQMPPAQPLSENPP 206
P L PG +PP P PP
Sbjct: 728 GFNPMHLPPGFLPPGPPPPITPP 750
Score = 43.1 bits (100), Expect = 3e-04
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQ-GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIP 171
P Q P A+Q TP +G G PG+PP P + PG P PPG +P
Sbjct: 683 PPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLR--PGFNPMHLPPGFLP 740
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMP 196
P G P PP ++PP P +P
Sbjct: 741 P-GPPPPITPPVSIPPPHTPPISIP 764
Score = 41.6 bits (96), Expect = 8e-04
Identities = 30/74 (40%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPP-----GMIP---PPGLAPGQIPPG 183
PVVGA+Q P PP+ P PG PP PPP G P PPG P PP
Sbjct: 690 PVVGALQPPA-FTPPLGIPPPGFG--PGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPP 746
Query: 184 AMPPQQLMPGQMPP 197
PP + P PP
Sbjct: 747 ITPPVSIPPPHTPP 760
Score = 38.5 bits (88), Expect = 0.007
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPR--IMHHMPGQPPYMPPPGMI 170
P + TP + V G G GPV G+ QAP ++ PG P PPGM
Sbjct: 792 PTNLPTPPVTQPVSLLGTQ---GVAPGPVIGL----QAPSTGLLGARPGLIPLQRPPGM- 843
Query: 171 PPPGLAPGQI-PPGAMPPQQLMPGQMPPAQPLSENPPN 207
PPP L + PP MPP + G P + PP+
Sbjct: 844 PPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFAMPPPH 881
Score = 36.2 bits (82), Expect = 0.033
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 29/105 (27%)
Query: 129 GATPVVGAVQGPVPGMPPM-TQAPRIMHHMPGQPPYM----PPPG----MIPPPGLAPGQ 179
GA P + +Q P PGMPP Q +M P PP+M PPPG +PPP G
Sbjct: 829 GARPGLIPLQRP-PGMPPPHLQRFPLMPPRP-MPPHMMHRGPPPGPGGFAMPPPHGMKGP 886
Query: 180 IP-------PGAMP-----------PQQLMPGQMPPAQPLSENPP 206
P PG MP P+ Q PP QP + P
Sbjct: 887 FPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQP 931
Score = 32.0 bits (71), Expect = 0.63
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM-----PPPGMIPP-PGLAPGQIP 181
G A P P P P+TQ ++ P + P G++ PGL P Q P
Sbjct: 784 GSAVPPAAPTNLPTP---PVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRP 840
Query: 182 PGAMPPQ----QLMPGQMPPAQPLSENPP 206
PG PP LMP + P + PP
Sbjct: 841 PGMPPPHLQRFPLMPPRPMPPHMMHRGPP 869
Score = 28.1 bits (61), Expect = 9.0
Identities = 34/139 (24%), Positives = 42/139 (30%), Gaps = 39/139 (28%)
Query: 96 KMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPV----VGAVQGPVPGMPPMTQAP 151
K+ F D + K ++T A P V A P PP QAP
Sbjct: 260 KLLDRFDYDDEPEAVEESKKEDTTAVTTTAPAAAVPPAPTATVPAAAAPAAASPPPPQAP 319
Query: 152 RIMHHMPG----QPPY--------------------------MPPPGMIPPPGLAPGQIP 181
PG QP Y +PP G +P GL P P
Sbjct: 320 ---FGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPGFGLLP--TP 374
Query: 182 PGAMPPQQLMPGQMPPAQP 200
P Q ++P P QP
Sbjct: 375 PFPPMAQPVIPPTPPVQQP 393
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 56.2 bits (134), Expect = 3e-08
Identities = 67/263 (25%), Positives = 103/263 (39%), Gaps = 72/263 (27%)
Query: 4 PETRP--NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKE 61
PET + T+++ L+++ + ++ ++ +FG I I + RG A+++
Sbjct: 485 PETASVCSTTLWVGQLDKRTTQQDVA----SLLEEFGPIESI---NMIPPRGCAYIVMVH 537
Query: 62 VSSATNALRSMQ--GFPFYDKPMRIQYAKTDSDIIAKMKG--------TFVERDRKREKR 111
A AL+ + + K ++I +A + I A K T++ D K
Sbjct: 538 RQDAYRALQKLSRGNYKVNQKSIKIAWA-LNKGIKADYKQYWDVELGVTYIPWD----KV 592
Query: 112 KPKSQET----------------------PATKKAVQGGGAT-------PVVGAVQGPVP 142
KP+ E+ P + A GG T P+ + PVP
Sbjct: 593 KPEELESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVP 652
Query: 143 GMP---PMT-QAPRIMHHMPG-------QPPYMPPPGMIPPPGLAPGQIPPGAMP----- 186
+P P+T P++ H PG QPP PP IPPPG PG PP P
Sbjct: 653 PIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRP 712
Query: 187 ---PQQLMPGQMPPAQPLSENPP 206
P L PG +PP P PP
Sbjct: 713 GFNPMHLPPGFLPPGPPPPITPP 735
Score = 43.1 bits (100), Expect = 3e-04
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQ-GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIP 171
P Q P A+Q TP +G G PG+PP P + PG P PPG +P
Sbjct: 668 PPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLR--PGFNPMHLPPGFLP 725
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMP 196
P G P PP ++PP P +P
Sbjct: 726 P-GPPPPITPPVSIPPPHTPPISIP 749
Score = 41.6 bits (96), Expect = 8e-04
Identities = 30/74 (40%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPP-----GMIP---PPGLAPGQIPPG 183
PVVGA+Q P PP+ P PG PP PPP G P PPG P PP
Sbjct: 675 PVVGALQPPA-FTPPLGIPPPGFG--PGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPP 731
Query: 184 AMPPQQLMPGQMPP 197
PP + P PP
Sbjct: 732 ITPPVSIPPPHTPP 745
Score = 38.5 bits (88), Expect = 0.007
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPR--IMHHMPGQPPYMPPPGMI 170
P + TP + V G G GPV G+ QAP ++ PG P PPGM
Sbjct: 799 PTNLPTPPVTQPVSLLGTQ---GVAPGPVIGL----QAPSTGLLGARPGLIPLQRPPGM- 850
Query: 171 PPPGLAPGQI-PPGAMPPQQLMPGQMPPAQPLSENPPN 207
PPP L + PP MPP + G P + PP+
Sbjct: 851 PPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFAMPPPH 888
Score = 36.2 bits (82), Expect = 0.033
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 29/105 (27%)
Query: 129 GATPVVGAVQGPVPGMPPM-TQAPRIMHHMPGQPPYM----PPPG----MIPPPGLAPGQ 179
GA P + +Q P PGMPP Q +M P PP+M PPPG +PPP G
Sbjct: 836 GARPGLIPLQRP-PGMPPPHLQRFPLMPPRP-MPPHMMHRGPPPGPGGFAMPPPHGMKGP 893
Query: 180 IP-------PGAMP-----------PQQLMPGQMPPAQPLSENPP 206
P PG MP P+ Q PP QP + P
Sbjct: 894 FPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQP 938
Score = 32.0 bits (71), Expect = 0.63
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM-----PPPGMIPP-PGLAPGQIP 181
G A P P P P+TQ ++ P + P G++ PGL P Q P
Sbjct: 791 GSAVPPAAPTNLPTP---PVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRP 847
Query: 182 PGAMPPQ----QLMPGQMPPAQPLSENPP 206
PG PP LMP + P + PP
Sbjct: 848 PGMPPPHLQRFPLMPPRPMPPHMMHRGPP 876
Score = 28.1 bits (61), Expect = 9.0
Identities = 34/139 (24%), Positives = 42/139 (30%), Gaps = 39/139 (28%)
Query: 96 KMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPV----VGAVQGPVPGMPPMTQAP 151
K+ F D + K ++T A P V A P PP QAP
Sbjct: 245 KLLDRFDYDDEPEAVEESKKEDTTAVTTTAPAAAVPPAPTATVPAAAAPAAASPPPPQAP 304
Query: 152 RIMHHMPG----QPPY--------------------------MPPPGMIPPPGLAPGQIP 181
PG QP Y +PP G +P GL P P
Sbjct: 305 ---FGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPGFGLLP--TP 359
Query: 182 PGAMPPQQLMPGQMPPAQP 200
P Q ++P P QP
Sbjct: 360 PFPPMAQPVIPPTPPVQQP 378
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 56.2 bits (134), Expect = 3e-08
Identities = 67/263 (25%), Positives = 103/263 (39%), Gaps = 72/263 (27%)
Query: 4 PETRP--NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKE 61
PET + T+++ L+++ + ++ ++ +FG I I + RG A+++
Sbjct: 500 PETASVCSTTLWVGQLDKRTTQQDVA----SLLEEFGPIESI---NMIPPRGCAYIVMVH 552
Query: 62 VSSATNALRSMQ--GFPFYDKPMRIQYAKTDSDIIAKMKG--------TFVERDRKREKR 111
A AL+ + + K ++I +A + I A K T++ D K
Sbjct: 553 RQDAYRALQKLSRGNYKVNQKSIKIAWA-LNKGIKADYKQYWDVELGVTYIPWD----KV 607
Query: 112 KPKSQET----------------------PATKKAVQGGGAT-------PVVGAVQGPVP 142
KP+ E+ P + A GG T P+ + PVP
Sbjct: 608 KPEELESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVP 667
Query: 143 GMP---PMT-QAPRIMHHMPG-------QPPYMPPPGMIPPPGLAPGQIPPGAMP----- 186
+P P+T P++ H PG QPP PP IPPPG PG PP P
Sbjct: 668 PIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRP 727
Query: 187 ---PQQLMPGQMPPAQPLSENPP 206
P L PG +PP P PP
Sbjct: 728 GFNPMHLPPGFLPPGPPPPITPP 750
Score = 43.1 bits (100), Expect = 3e-04
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQ-GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIP 171
P Q P A+Q TP +G G PG+PP P + PG P PPG +P
Sbjct: 683 PPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLR--PGFNPMHLPPGFLP 740
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMP 196
P G P PP ++PP P +P
Sbjct: 741 P-GPPPPITPPVSIPPPHTPPISIP 764
Score = 41.6 bits (96), Expect = 8e-04
Identities = 30/74 (40%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPP-----GMIP---PPGLAPGQIPPG 183
PVVGA+Q P PP+ P PG PP PPP G P PPG P PP
Sbjct: 690 PVVGALQPPA-FTPPLGIPPPGFG--PGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPP 746
Query: 184 AMPPQQLMPGQMPP 197
PP + P PP
Sbjct: 747 ITPPVSIPPPHTPP 760
Score = 38.5 bits (88), Expect = 0.007
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPR--IMHHMPGQPPYMPPPGMI 170
P + TP + V G G GPV G+ QAP ++ PG P PPGM
Sbjct: 814 PTNLPTPPVTQPVSLLGTQ---GVAPGPVIGL----QAPSTGLLGARPGLIPLQRPPGM- 865
Query: 171 PPPGLAPGQI-PPGAMPPQQLMPGQMPPAQPLSENPPN 207
PPP L + PP MPP + G P + PP+
Sbjct: 866 PPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFAMPPPH 903
Score = 36.2 bits (82), Expect = 0.033
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 29/105 (27%)
Query: 129 GATPVVGAVQGPVPGMPPM-TQAPRIMHHMPGQPPYM----PPPG----MIPPPGLAPGQ 179
GA P + +Q P PGMPP Q +M P PP+M PPPG +PPP G
Sbjct: 851 GARPGLIPLQRP-PGMPPPHLQRFPLMPPRP-MPPHMMHRGPPPGPGGFAMPPPHGMKGP 908
Query: 180 IP-------PGAMP-----------PQQLMPGQMPPAQPLSENPP 206
P PG MP P+ Q PP QP + P
Sbjct: 909 FPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQP 953
Score = 32.0 bits (71), Expect = 0.63
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM-----PPPGMIPP-PGLAPGQIP 181
G A P P P P+TQ ++ P + P G++ PGL P Q P
Sbjct: 806 GSAVPPAAPTNLPTP---PVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRP 862
Query: 182 PGAMPPQ----QLMPGQMPPAQPLSENPP 206
PG PP LMP + P + PP
Sbjct: 863 PGMPPPHLQRFPLMPPRPMPPHMMHRGPP 891
Score = 28.1 bits (61), Expect = 9.0
Identities = 34/139 (24%), Positives = 42/139 (30%), Gaps = 39/139 (28%)
Query: 96 KMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPV----VGAVQGPVPGMPPMTQAP 151
K+ F D + K ++T A P V A P PP QAP
Sbjct: 260 KLLDRFDYDDEPEAVEESKKEDTTAVTTTAPAAAVPPAPTATVPAAAAPAAASPPPPQAP 319
Query: 152 RIMHHMPG----QPPY--------------------------MPPPGMIPPPGLAPGQIP 181
PG QP Y +PP G +P GL P P
Sbjct: 320 ---FGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPGFGLLP--TP 374
Query: 182 PGAMPPQQLMPGQMPPAQP 200
P Q ++P P QP
Sbjct: 375 PFPPMAQPVIPPTPPVQQP 393
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 51.6 bits (122), Expect = 8e-07
Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 14/145 (9%)
Query: 123 KAVQGGGATPVVGAVQG-----PVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAP 177
+ V G P +GA P P +PP + P + + P PP PPP PPP P
Sbjct: 507 EVVAGNSVGPTMGAASSGPLPPPPPPLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPP 566
Query: 178 GQIPPGAMP-------PQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ 230
PP +P P + +P A PL ++F + L + + F +
Sbjct: 567 PPPPPPPLPGPAAETVPAPPLAPPLPSAPPLPGTSSPTVVFNSGLAAVKIKKPIKTKF-R 625
Query: 231 FPGFKEVRLVPGR-HDIAFVEFDNE 254
P F V L P + + F E D+E
Sbjct: 626 MPVFNWVALKPNQINGTVFNEIDDE 650
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 51.2 bits (121), Expect = 1e-06
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 112 KPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY---MPPPG 168
+P Q P A+ G P Q P + P+ QA M H P + P
Sbjct: 288 QPTGQPAP---DALYPNGVHPY--PAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPA 342
Query: 169 MIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLF 228
PP L Q PP P QQ Q Q E P +F+ +LP+E + + +F
Sbjct: 343 FPQPPALVAQQPPPP--PQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMF 400
Query: 229 NQFPGFKEVRLVPGRHD-----IAFVEFDNEVQAGAARDALQGFKI 269
F ++ R FV FDN A AA A+ GF+I
Sbjct: 401 VPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI 446
Score = 29.6 bits (65), Expect = 3.1
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 27 KKSLYAIFSQFGQILDILVSRSLKM---RGQAFVIF---KEVSSATNALRSMQGFPFYDK 80
+K L IF QFG+I ++ V + +G AF+ + A +AL + P ++
Sbjct: 20 EKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNR 79
Query: 81 PMRIQYAKTDS 91
P++++ A ++S
Sbjct: 80 PIQVKPADSES 90
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 50.4 bits (119), Expect = 2e-06
Identities = 36/90 (40%), Positives = 43/90 (47%), Gaps = 20/90 (22%)
Query: 132 PVVGAVQGPVPGMPPMTQAP----------RIMHH--MPGQPPYMPPPGMIPPPGLAPGQ 179
P G GP PG PP + P R++ PG+PP PPPG PPPGL PG
Sbjct: 426 PPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPP-GPPPG--PPPGLPPG- 481
Query: 180 IPPGAMPPQQL---MPGQMPPAQPLSENPP 206
PP PP +L P +PP +P PP
Sbjct: 482 -PPPRGPPPRLPPPAPPGIPPPRPGMMRPP 510
Score = 47.0 bits (110), Expect = 2e-05
Identities = 44/173 (25%), Positives = 62/173 (35%), Gaps = 29/173 (16%)
Query: 60 KEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETP 119
KE++ + M G ++ ++ D D ++ +K+ K + S T
Sbjct: 325 KELTPLQAMMLRMAGQEIPEEGREVEEFSEDDDEDDSDDSEAEKQSQKQHKEESHSDGTS 384
Query: 120 ATKKAVQGGGATPVVGAVQGP-VPGMPPMTQAPRIMHHMPGQP------------PYMPP 166
Q + +Q P +PG PP+ P PG P P++ P
Sbjct: 385 TASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRP 444
Query: 167 PGMI-------------PPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206
PGM PPPG PG PPG PP L PG P P PP
Sbjct: 445 PGMPGLRGPLPRLLPPGPPPGRPPGP-PPG--PPPGLPPGPPPRGPPPRLPPP 494
Score = 45.4 bits (106), Expect = 5e-05
Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPP--GMIPPPGLAP-GQIPPGAMPPQ 188
P G G PG PP PR+ P PP +PPP GM+ PP + P G PPG PP
Sbjct: 470 PPPGPPPGLPPGPPPRGPPPRLP---PPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPA 526
Query: 189 QL-MPGQMPPAQPLSENP 205
L PG + L + P
Sbjct: 527 PLPNPGVLSAPPNLIQRP 544
Score = 43.1 bits (100), Expect = 3e-04
Identities = 33/81 (40%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 135 GAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGM--IPPPG---LAPGQIPP-GAMPPQ 188
G GP PG+PP PR G PP +PPP IPPP + P +PP G PP
Sbjct: 469 GPPPGPPPGLPP-GPPPR------GPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPG 521
Query: 189 QLMPGQMPPAQPLSENPPNHI 209
P +P LS PPN I
Sbjct: 522 LFPPAPLPNPGVLSA-PPNLI 541
Score = 32.0 bits (71), Expect = 0.63
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 78 YDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAV 137
+++ +R+ Y K + DI +++ VE ++KR + SQ A K A V
Sbjct: 89 FERILRL-YEKENPDIYKELRKLEVEYEQKRAQL---SQYFDAVKNAQH-------VEVE 137
Query: 138 QGPVPGMPPMTQAPRIMH-HMPG-QPP-YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQ 194
P+P MP I +PG QPP + PP A +P +L PG+
Sbjct: 138 SIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGR 197
Query: 195 MPPAQPLSENPP 206
PP P PP
Sbjct: 198 KPPGPPPGPPPP 209
>gi|40538732 RNA-binding region (RNP1, RRM) containing 3 [Homo
sapiens]
Length = 517
Score = 50.1 bits (118), Expect = 2e-06
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 8 PNHTIYINNLNEKIKKDELKKSL--YAIFSQFGQ--ILDILVSRSLKMRGQAFVIFKEVS 63
PN IY+ NL + +++ +LK Y FS Q + DI + + +M+GQAF+
Sbjct: 418 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 477
Query: 64 SATNALRSMQGFPFYDKPMRIQYAKT 89
+A AL+ G+ + KPM +Q+A++
Sbjct: 478 AAAKALKEANGYVLFGKPMVVQFARS 503
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 49.7 bits (117), Expect = 3e-06
Identities = 25/72 (34%), Positives = 31/72 (43%)
Query: 140 PVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQ 199
P P MPP++ P + P PP PP PPP P +P PP P PP
Sbjct: 667 PAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPP 726
Query: 200 PLSENPPNHILF 211
L+ PP + F
Sbjct: 727 GLAPPPPPGLFF 738
Score = 38.1 bits (87), Expect = 0.009
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 141 VPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQP 200
+P PP+ + P PP P + PPP P PP + P P PP P
Sbjct: 652 IPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPP---PPPPPPPLP 708
Query: 201 LSENPPN 207
S PPN
Sbjct: 709 NSPAPPN 715
Score = 33.9 bits (76), Expect = 0.16
Identities = 23/69 (33%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
PV P P PP P P PP P P PP PG PP
Sbjct: 673 PVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPN-------PGGPPPAPPP 725
Query: 192 PGQMPPAQP 200
PG PP P
Sbjct: 726 PGLAPPPPP 734
Score = 32.7 bits (73), Expect = 0.37
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 165 PPPGMIPPPGLAPGQI----PPGAMPPQQLMPGQMPPAQPLSENPP 206
PPP IPPP P + P MPP P PP P PP
Sbjct: 647 PPPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPP 692
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 49.7 bits (117), Expect = 3e-06
Identities = 28/61 (45%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPP 187
G ATP G + P PGM P P + G P MPPPGM PPP G PPG PP
Sbjct: 180 GRATPPPG-IMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Query: 188 Q 188
+
Sbjct: 239 R 239
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 140 PVPGMPPMTQAPRIMHHMPG-QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 197
P P + T P IM PG +PP PP G+ P G G PPG PP + G PP
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPP 233
Score = 40.0 bits (92), Expect = 0.002
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG-MIP 171
P Q + A ++ G PP P P PPPG M P
Sbjct: 137 PSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPP-----PPVGRATPPPGIMAP 191
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206
PPG+ P PP +PP + P MPP P PP
Sbjct: 192 PPGMRPPMGPPIGLPPARGTPIGMPP--PGMRPPP 224
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 49.7 bits (117), Expect = 3e-06
Identities = 28/61 (45%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPP 187
G ATP G + P PGM P P + G P MPPPGM PPP G PPG PP
Sbjct: 180 GRATPPPG-IMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Query: 188 Q 188
+
Sbjct: 239 R 239
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 140 PVPGMPPMTQAPRIMHHMPG-QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 197
P P + T P IM PG +PP PP G+ P G G PPG PP + G PP
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPP 233
Score = 40.0 bits (92), Expect = 0.002
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG-MIP 171
P Q + A ++ G PP P P PPPG M P
Sbjct: 137 PSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPP-----PPVGRATPPPGIMAP 191
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206
PPG+ P PP +PP + P MPP P PP
Sbjct: 192 PPGMRPPMGPPIGLPPARGTPIGMPP--PGMRPPP 224
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 49.7 bits (117), Expect = 3e-06
Identities = 28/61 (45%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPP 187
G ATP G + P PGM P P + G P MPPPGM PPP G PPG PP
Sbjct: 180 GRATPPPG-IMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Query: 188 Q 188
+
Sbjct: 239 R 239
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 140 PVPGMPPMTQAPRIMHHMPG-QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 197
P P + T P IM PG +PP PP G+ P G G PPG PP + G PP
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPP 233
Score = 40.0 bits (92), Expect = 0.002
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG-MIP 171
P Q + A ++ G PP P P PPPG M P
Sbjct: 137 PSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPP-----PPVGRATPPPGIMAP 191
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206
PPG+ P PP +PP + P MPP P PP
Sbjct: 192 PPGMRPPMGPPIGLPPARGTPIGMPP--PGMRPPP 224
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 49.7 bits (117), Expect = 3e-06
Identities = 28/61 (45%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPP 187
G ATP G + P PGM P P + G P MPPPGM PPP G PPG PP
Sbjct: 180 GRATPPPG-IMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Query: 188 Q 188
+
Sbjct: 239 R 239
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 140 PVPGMPPMTQAPRIMHHMPG-QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 197
P P + T P IM PG +PP PP G+ P G G PPG PP + G PP
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPP 233
Score = 40.0 bits (92), Expect = 0.002
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG-MIP 171
P Q + A ++ G PP P P PPPG M P
Sbjct: 137 PSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPP-----PPVGRATPPPGIMAP 191
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206
PPG+ P PP +PP + P MPP P PP
Sbjct: 192 PPGMRPPMGPPIGLPPARGTPIGMPP--PGMRPPP 224
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 49.7 bits (117), Expect = 3e-06
Identities = 28/61 (45%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPP 187
G ATP G + P PGM P P + G P MPPPGM PPP G PPG PP
Sbjct: 180 GRATPPPG-IMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPP 238
Query: 188 Q 188
+
Sbjct: 239 R 239
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 140 PVPGMPPMTQAPRIMHHMPG-QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 197
P P + T P IM PG +PP PP G+ P G G PPG PP + G PP
Sbjct: 175 PPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPP 233
Score = 40.0 bits (92), Expect = 0.002
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG-MIP 171
P Q + A ++ G PP P P PPPG M P
Sbjct: 137 PSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPP-----PPVGRATPPPGIMAP 191
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206
PPG+ P PP +PP + P MPP P PP
Sbjct: 192 PPGMRPPMGPPIGLPPARGTPIGMPP--PGMRPPP 224
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 49.7 bits (117), Expect = 3e-06
Identities = 42/122 (34%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 104 RDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVP-----GMPPMTQA----PRIM 154
++ +++K++ S E A V QG +P G+PP+ A P I
Sbjct: 102 QESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIP 161
Query: 155 HHMPGQPPYMP--PPGMIPPPGLAPGQIPPGAMPP-----QQLMPGQ---MPPAQPLSEN 204
MPG PP MP PP M PG+ PG +P G M P LMPG MPP P
Sbjct: 162 PLMPGVPPLMPGMPPVM---PGMPPGMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGI 218
Query: 205 PP 206
PP
Sbjct: 219 PP 220
Score = 47.8 bits (112), Expect = 1e-05
Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 129 GATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPG-----LAPGQIPPG 183
G P++ V +PGMPP+ MPG PP M P G + PPG L PG +PPG
Sbjct: 159 GIPPLMPGVPPLMPGMPPV---------MPGMPPGMMPMGGMMPPGPGIPPLMPG-MPPG 208
Query: 184 AMPPQQLMPGQMPPAQPLSENPP 206
MPP PG P Q + + P
Sbjct: 209 -MPPPVPRPGIPPMTQAQAVSAP 230
Score = 42.4 bits (98), Expect = 5e-04
Identities = 38/145 (26%), Positives = 54/145 (37%), Gaps = 14/145 (9%)
Query: 63 SSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATK 122
+S TN+ + KP + S +I + D E+R+ + P +
Sbjct: 333 TSTTNSTAAKPAASITSKPATLTTTSATSKLIHP------DEDISLEERRA---QLPKYQ 383
Query: 123 KAVQGGGATPVVGAVQGPVPGM-PPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 181
+ + G P+ GP+ GM PP P+ G P MPP G
Sbjct: 384 RNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQ----QQGMRPPMPPHGQYGGHHQGMPGYL 439
Query: 182 PGAMPPQQLMPGQMPPAQPLSENPP 206
PGAMPP P +PP Q PP
Sbjct: 440 PGAMPPYGQGPPMVPPYQGGPPRPP 464
Score = 36.6 bits (83), Expect = 0.025
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 129 GATPVVGAVQGPVPGMPPMTQ-----------APRIMHHMPGQPPYMPPPGMIPPPGLAP 177
G P++ + +PGMPP P + MPG PP MPPP +P PG+ P
Sbjct: 166 GVPPLMPGMPPVMPGMPPGMMPMGGMMPPGPGIPPL---MPGMPPGMPPP--VPRPGIPP 220
Query: 178 GQIPPGAMPPQQLMPGQMPPAQPLSENPP 206
P L P A + PP
Sbjct: 221 MTQAQAVSAPGILNRPPAPTATVPAPQPP 249
>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c1 [Homo sapiens]
Length = 1105
Score = 49.3 bits (116), Expect = 4e-06
Identities = 40/114 (35%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 104 RDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPR--IMHH-MPGQ 160
R R++ +++ Q + G G P+ A PGM P Q P +MHH MP
Sbjct: 953 RARQQMEQQQHGQNPQQAHQHSGGPGLAPLGAAGH---PGMMPHQQPPPYPLMHHQMP-- 1007
Query: 161 PPYMPPPGMIPPPG-LAPGQIPPGAMPP---QQLMPGQMPPAQPLSENPPNHIL 210
PP+ P PG IP PG + PGQ PG M P + P P P P +IL
Sbjct: 1008 PPHPPQPGQIPGPGSMMPGQHMPGRMIPTVAANIHPSGSGPTPPGMPPMPGNIL 1061
Score = 32.7 bits (73), Expect = 0.37
Identities = 26/70 (37%), Positives = 27/70 (38%), Gaps = 13/70 (18%)
Query: 127 GGGATPVVGAVQGPVPGMPPMTQ---APRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPG 183
G G TP PGMPPM PR+ P PP PPP A G PP
Sbjct: 1045 GSGPTP---------PGMPPMPGNILGPRVPLTAPNGMYPPPPQQQPPPPPPADGVPPPP 1095
Query: 184 AM-PPQQLMP 192
A PP P
Sbjct: 1096 APGPPASAAP 1105
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 49.3 bits (116), Expect = 4e-06
Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 128 GGATPVVG------AVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 181
GG P +G + GP PGM P P + G P MPPPGM PPP G P
Sbjct: 173 GGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPP 232
Query: 182 PGAMPPQ 188
PG PP+
Sbjct: 233 PGMRPPR 239
Score = 42.7 bits (99), Expect = 4e-04
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM--PPPGMI 170
P Q + A ++ G PP P PP M PPPGM
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196
Query: 171 PPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206
PP G P IPPG P + P M P P PP
Sbjct: 197 PPMG-PPMGIPPGRGTPMGMPPPGMRPPPPGMRGPP 231
Score = 42.7 bits (99), Expect = 4e-04
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 139 GPVPGMPPMTQAPRIMHHMPG-QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 197
GP P M P +M PG +PP PP G+ P G G PPG PP M G PP
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPP 233
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 48.9 bits (115), Expect = 5e-06
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 104 RDRKREKRKPKSQETPATKKAVQG-GGATPVVGAVQGPVPGMPPMTQ-----APRIMHHM 157
R + E+R P+S+ ++ GG+ G G G PP ++ AP + H
Sbjct: 603 RTGRPEERAPESKSGSGSESEPSSRGGSLRRGGEASGTSDGGPPPSRGSTGGAPNLRAH- 661
Query: 158 PGQPPYMPPPGMI-------------PPPGLAPGQIPPGAMPPQQLMPGQMPP 197
PG PY PPPGM PPP + P PPGA P + L G +PP
Sbjct: 662 PGLHPYGPPPGMALPYNPMMVVMMPPPPPPVPPAVQPPGAPPVRDL--GSVPP 712
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 48.9 bits (115), Expect = 5e-06
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 103 ERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162
E ++K E+ K K E + A ++ A + +PP P + P PP
Sbjct: 365 EEEKKEEEEKDKEGEEKEERAV-----AEEMMPAAEKEEAKLPP----PPLTPPAPSPPP 415
Query: 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206
+PPP PPP L P PP + PP P PPAQ E P
Sbjct: 416 PLPPPSTSPPPPLCPPPPPPVSPPPLPSPP--PPPAQEEQEESP 457
Score = 40.4 bits (93), Expect = 0.002
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 103 ERDRKREKRKPKS---QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159
E+D++ E+++ ++ + PA +K P+ P P +PP + +P
Sbjct: 373 EKDKEGEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSP-------- 424
Query: 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPP 197
PP PP PPP ++P +P PP Q + PP
Sbjct: 425 PPPLCPP----PPPPVSPPPLPSPPPPPAQEEQEESPP 458
Score = 31.2 bits (69), Expect = 1.1
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
Query: 111 RKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAP---------RIMH-HMPGQ 160
R P+ + A K + P +GA + P P PP +P R H +P
Sbjct: 648 RAPQFTPSEAHLKIYESVLTPPPLGAPEAPEPEPPPADDSPAEPEPRAVGRTNHLSLPRF 707
Query: 161 PPYMPPP--GMIPP---PGLAPGQ------IPPGAMPPQQLMPGQMPPAQPLSENPPN 207
P + P + P P L+ G + P QL+P +PP QP + PP+
Sbjct: 708 APVVTTPVKAEVSPHGAPALSNGPQTQAQLLQPLQALQTQLLPQALPPPQPQLQPPPS 765
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 48.5 bits (114), Expect = 6e-06
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 140 PVPGMPPMTQAPRIMHHMPGQPPYMPP-------PGMIPPPGLAPGQIPPGAMPPQQLMP 192
P PGMPP P + +P PP MPP P ++PPP L+ PP +PP L
Sbjct: 556 PPPGMPPPVMPPSLPTSVP--PPGMPPSLSSAGPPPVLPPPSLSSAG-PPPVLPPPSLSS 612
Query: 193 GQMPPAQPL----SENPP 206
PP PL S PP
Sbjct: 613 TAPPPVMPLPPLSSATPP 630
Score = 45.1 bits (105), Expect = 7e-05
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGM--- 169
P S P ++ G PV+ G PP+ P + P PP MP P +
Sbjct: 570 PTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAP--PPVMPLPPLSSA 627
Query: 170 IPPPGLAPGQIPPGAMPPQQLMPGQMPPA 198
PPPG+ P +P G P QL +PPA
Sbjct: 628 TPPPGIPPPGVPQGI--PPQLTAAPVPPA 654
Score = 42.7 bits (99), Expect = 4e-04
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 140 PVPGMPPMTQAPRIMHHM--PGQPPYMPPPGMIPP---PGLAPGQIPPGAMPPQQLMPGQ 194
P+P MPP P + + P P +PPPGM PP P L +PP MPP G
Sbjct: 529 PLPTMPPPVLPPSLPPPVMPPALPATVPPPGMPPPVMPPSLPT-SVPPPGMPPSLSSAGP 587
Query: 195 ---MPPAQPLSENPP 206
+PP S PP
Sbjct: 588 PPVLPPPSLSSAGPP 602
Score = 42.4 bits (98), Expect = 5e-04
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 157 MPGQPPYMPPPGMIPPPGLAPGQIP---PGAMPPQQLMPGQMPPAQPLSENPP 206
MP P MPPP + PP L P +P P +PP + P MPP+ P S PP
Sbjct: 526 MPPPLPTMPPP--VLPPSLPPPVMPPALPATVPPPGMPPPVMPPSLPTSVPPP 576
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 139 GPVPGMPPMT-----QAPRIM--HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLM 191
GP PG+ PM ++P + +MP YMPPP PPP P +PP Q
Sbjct: 134 GP-PGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQ--PPPSYYPPTSSQPYLPPAQPS 190
Query: 192 PGQMPPAQPLSENPPNH 208
P Q PP+Q P++
Sbjct: 191 PSQSPPSQSYLAPTPSY 207
Score = 38.9 bits (89), Expect = 0.005
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 143 GMPPMTQAPRIMHHMPGQPPYMPPPGM--------IPPPGLAPGQIPPGAMPPQQLMPGQ 194
G PP+ P + G PP +PPP + +P P L+ PPG PP +P
Sbjct: 586 GPPPVLPPPSL--SSAGPPPVLPPPSLSSTAPPPVMPLPPLSSATPPPGIPPPG--VPQG 641
Query: 195 MPPAQPLSENPPNHILFLTNLPEETNELML 224
+PP + PP + +PE+ +L
Sbjct: 642 IPPQLTAAPVPPASSSQSSQVPEKPRPALL 671
Score = 37.0 bits (84), Expect = 0.019
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLS 202
HH+P PP +PPP ++P G Q PP MPP PP LS
Sbjct: 79 HHLP--PPPLPPPPVMPGGGYGDWQPPPPPMPP--------PPGPALS 116
Score = 35.4 bits (80), Expect = 0.057
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 142 PGMPPMTQAPRIMHHMPGQPPYMPPPGMIPP----PGLAPGQIPPGAMPPQQLMPGQMPP 197
P +PP + P +MP P PPP PP P L P Q P PP Q P
Sbjct: 150 PPVPPGSYMPPSQSYMP---PPQPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAPTPS 206
Query: 198 AQPLSENPPNHI 209
S + +++
Sbjct: 207 YSSSSSSSQSYL 218
Score = 33.1 bits (74), Expect = 0.28
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 28/88 (31%)
Query: 140 PVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI------------------- 180
P P +PP P G + PPP +PPP PG
Sbjct: 82 PPPPLPPPPVMPG-----GGYGDWQPPPPPMPPP---PGPALSYQKQQQYKHQMLHHQRD 133
Query: 181 -PPGAMPPQQLMPGQMPPAQPLSENPPN 207
PPG +P + P + PP P S PP+
Sbjct: 134 GPPGLVPMELESPPESPPVPPGSYMPPS 161
Score = 33.1 bits (74), Expect = 0.28
Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 8/126 (6%)
Query: 87 AKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPP 146
A DSD + G V R+ E +QE ++ + G+ +PP
Sbjct: 1434 ASLDSD--QGLGGVMVLSQRQHEIILKAAQELKMLREQKEQLQKMKDFGSEPQMADHLPP 1491
Query: 147 MTQAPRIMHHMPGQPP----YMPPPGMIPPPG--LAPGQIPPGAMPPQQLMPGQMPPAQP 200
+ PG P Y PPP M PPG + P P + P P +PP P
Sbjct: 1492 QESRLQNTSSRPGMYPPPGSYRPPPPMGKPPGSIVRPSAPPARSSVPVTRPPVPIPPPPP 1551
Query: 201 LSENPP 206
PP
Sbjct: 1552 PPPLPP 1557
Score = 32.3 bits (72), Expect = 0.48
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 157 MPGQPPYMPPP--GMIPPPGLAPGQIPPGAMPP 187
+P P PPP IPPPG P +PP + PP
Sbjct: 1602 IPSAPVLPPPPVHSSIPPPGPVPMGMPPMSKPP 1634
Score = 29.3 bits (64), Expect = 4.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENP 205
+P +P +P P PP + +P +PP +P SE+P
Sbjct: 336 VPATSQVPE---SPSSEEPPLPPPNEEVPPPLPPEEPQSEDP 374
Score = 29.3 bits (64), Expect = 4.1
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 130 ATPVVGAVQGPVP-GMPPMTQA---PRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAM 185
ATP G VP G+PP A P Q P P P ++P P ++ G PP
Sbjct: 627 ATPPPGIPPPGVPQGIPPQLTAAPVPPASSSQSSQVPEKPRPALLPTP-VSFGSAPPTTY 685
Query: 186 PPQQLMPG---QMPPAQPLSEN 204
P G Q+ PLS++
Sbjct: 686 HPPLQSAGPSEQVNSKAPLSKS 707
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 48.1 bits (113), Expect = 8e-06
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 140 PVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQ 199
P P PP+ + P P P PPP + PP PG +PP ++PP P +PP Q
Sbjct: 330 PFPAQPPVVEGPPPPGLPPPPPILTPPPVNLRPPVPPPGPLPP-SLPPVTGPPPPLPPLQ 388
Query: 200 PLS-ENPPN 207
P + PPN
Sbjct: 389 PSGMDAPPN 397
Score = 38.9 bits (89), Expect = 0.005
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 140 PVPGMPPMTQAPRIMHHMP-GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPA 198
P PG+PP P I+ P P +PPPG +PP L P PP +PP Q PP
Sbjct: 342 PPPGLPP---PPPILTPPPVNLRPPVPPPGPLPP-SLPPVTGPPPPLPPLQPSGMDAPPN 397
Query: 199 QPLSENP 205
S P
Sbjct: 398 SATSSVP 404
Score = 30.8 bits (68), Expect = 1.4
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 142 PGMPPMTQAPRIMHHMPGQPPYMPP---PGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPA 198
P +PP P + + G PP +PP GM PP A +P P PP+
Sbjct: 362 PPVPPPGPLPPSLPPVTGPPPPLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPPAPPS 421
>gi|72534686 Huntingtin interacting protein C isoform 1 [Homo
sapiens]
Length = 871
Score = 48.1 bits (113), Expect = 8e-06
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 161 PPYMPPPGM---IPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPE 217
PP+MPPPG+ PP GL P P A+PP + PG +PP P PP LT +P
Sbjct: 4 PPFMPPPGIPPPFPPMGLPPMSQRPPAIPP--MPPGILPPMLPPMGAPPP----LTQIPG 57
Query: 218 ETNELMLSMLFNQFP 232
+M ML P
Sbjct: 58 MVPPMMPGMLMPAVP 72
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 140 PVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPP-GAMPPQQLMPGQMPPA 198
P PG+PP P + M +PP +PP PPG+ P +PP GA PP +PG +PP
Sbjct: 8 PPPGIPPPFP-PMGLPPMSQRPPAIPPM----PPGILPPMLPPMGAPPPLTQIPGMVPPM 62
Query: 199 QP 200
P
Sbjct: 63 MP 64
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 24/87 (27%)
Query: 140 PVPGMPPMTQAPRIMHHMPGQ--PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP----- 192
P G+PPM+Q P + MP PP +PP G PP PG +PP M P LMP
Sbjct: 17 PPMGLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPP--MMPGMLMPAVPVT 74
Query: 193 ---------------GQMPPAQPLSEN 204
G PP SE+
Sbjct: 75 AATAPGADTASSAVAGTGPPRALWSEH 101
Score = 31.2 bits (69), Expect = 1.1
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 149 QAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNH 208
Q P+ + P QP PPP PPG P +P G + P+ PG L P
Sbjct: 185 QLPQTLQPQPPQPQPDPPP---VPPG--PTPVPTGLLEPE---PGGSEDCDVLEATQPLE 236
Query: 209 ILFLTNLPE 217
FL L E
Sbjct: 237 QGFLQQLEE 245
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 47.8 bits (112), Expect = 1e-05
Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 38/287 (13%)
Query: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60
MA+ P I + NL + D L + IFS+FG +L I ++ + + QA + +
Sbjct: 175 MAMAGQSPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKI-ITFTKNNQFQALLQYA 229
Query: 61 EVSSATNALRSMQGFPFYDK--PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKP---KS 115
+ SA +A S+ G Y+ +RI ++K S + D+ R+ +P
Sbjct: 230 DPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVK------YNNDKSRDYTRPDLPSG 283
Query: 116 QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGL 175
P+ + + A+P GA G PP P Q + P + L
Sbjct: 284 DSQPSLDQTMAAAFASPYAGA------GFPPTFAIP--------QAAGLSVPNV--HGAL 327
Query: 176 APGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGF 234
AP IP A G++ A P N +L ++NL PE L +LF +
Sbjct: 328 APLAIPSAAAAAAAA--GRI--AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDV 383
Query: 235 KEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281
+ V+++ + + A V+ + QA A L G K+ ++I+ +K
Sbjct: 384 QRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSK 429
Score = 32.3 bits (72), Expect = 0.48
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 205 PPNHILFLTNLPEETNELMLSMLFNQFPG-FKEVRLVPGRHDIAFVEFDNEVQAGAARDA 263
PP+ L L+N+P +E L +LF+ G K + +A ++ + +A A
Sbjct: 470 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALID 529
Query: 264 LQGFKITQNNAMKISFAK 281
L + +N+ +++SF+K
Sbjct: 530 LHNHDLGENHHLRVSFSK 547
>gi|7706326 splicing factor 3B, 14 kDa subunit [Homo sapiens]
Length = 125
Score = 47.4 bits (111), Expect = 1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 68
N +YI NL KI +E+ Y IF ++G I I V + + RG A+V+++++ A NA
Sbjct: 18 NRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
Query: 69 LRSMQGFPFYDKPMRIQY 86
+ GF ++ + + Y
Sbjct: 74 CDHLSGFNVCNRYLVVLY 91
Score = 31.6 bits (70), Expect = 0.82
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 205 PP--NHILFLTNLPEETNELMLSMLFNQFPGFKEVRL--VPGRHDIAFVEFDNEVQAGAA 260
PP N IL++ NLP + + +F ++ +++R+ P A+V +++ A A
Sbjct: 14 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
Query: 261 RDALQGFKI 269
D L GF +
Sbjct: 74 CDHLSGFNV 82
>gi|29789008 Huntingtin interacting protein C isoform 2 [Homo
sapiens]
Length = 858
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 140 PVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPP-GAMPPQQLMPGQMPPA 198
P PG+PP P + M +PP +PP PPG+ P +PP GA PP +PG +PP
Sbjct: 2 PPPGIPPPFP-PMGLPPMSQRPPAIPPM----PPGILPPMLPPMGAPPPLTQIPGMVPPM 56
Query: 199 QP 200
P
Sbjct: 57 MP 58
Score = 41.6 bits (96), Expect = 8e-04
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 164 MPPPGM---IPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETN 220
MPPPG+ PP GL P P A+PP + PG +PP P PP LT +P
Sbjct: 1 MPPPGIPPPFPPMGLPPMSQRPPAIPP--MPPGILPPMLPPMGAPPP----LTQIPGMVP 54
Query: 221 ELMLSMLFNQFP 232
+M ML P
Sbjct: 55 PMMPGMLMPAVP 66
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 24/87 (27%)
Query: 140 PVPGMPPMTQAPRIMHHMPGQ--PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP----- 192
P G+PPM+Q P + MP PP +PP G PP PG +PP M P LMP
Sbjct: 11 PPMGLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPP--MMPGMLMPAVPVT 68
Query: 193 ---------------GQMPPAQPLSEN 204
G PP SE+
Sbjct: 69 AATAPGADTASSAVAGTGPPRALWSEH 95
Score = 31.2 bits (69), Expect = 1.1
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 149 QAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNH 208
Q P+ + P QP PPP PPG P +P G + P+ PG L P
Sbjct: 179 QLPQTLQPQPPQPQPDPPP---VPPG--PTPVPTGLLEPE---PGGSEDCDVLEATQPLE 230
Query: 209 ILFLTNLPE 217
FL L E
Sbjct: 231 QGFLQQLEE 239
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/212 (27%), Positives = 84/212 (39%), Gaps = 46/212 (21%)
Query: 17 LNEKIKKDE-LKKSLYAIFSQFGQILDI-----LVSRSLKMRGQAFVIFKEVSSATNALR 70
+ E +KK E L K++ +F ++ L LK A+ F E+ +
Sbjct: 620 VQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLK--- 676
Query: 71 SMQGFPFYDK--PMRIQYAKTDSDIIAKMKGTFVERDR---------KREKRKPKSQETP 119
+G FY++ + +++ SDI+ K ERD RE P S TP
Sbjct: 677 --EGTKFYNELTEILVRFQNKCSDIVFARK---TERDELLKDLQQSIAREPSAP-SIPTP 730
Query: 120 ATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIP----PPGL 175
A + + GG A P T APR M QPP PPP ++P P
Sbjct: 731 AYQSSPAGGHAPT-------------PPTPAPRTMPPTKPQPPARPPPPVLPANRAPSAT 777
Query: 176 APGQIPPG-AMPPQQLMPGQMPPAQPLSENPP 206
AP + G A P PG PP P ++ PP
Sbjct: 778 APSPVGAGTAAPAPSQTPGSAPP--PQAQGPP 807
Score = 31.2 bits (69), Expect = 1.1
Identities = 29/95 (30%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGP----VPGMPPMTQAPRIM---------HHMPG 159
P T A + G A P QGP PG P Q P M ++MP
Sbjct: 781 PVGAGTAAPAPSQTPGSAPPP--QAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPY 838
Query: 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQ 194
P Y PG P PG P P Q P Q
Sbjct: 839 PPVYHQSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ 873
Score = 30.4 bits (67), Expect = 1.8
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 113 PKSQETPATKKAVQGGG-ATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIP 171
P ++ AT + G G A P G P PP Q P + PG P Y P +
Sbjct: 769 PANRAPSATAPSPVGAGTAAPAPSQTPGSAP--PPQAQGPPYPTY-PGYPGYCQMPMPMG 825
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMP---PAQP 200
A GQ P PGQ P P QP
Sbjct: 826 YNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQP 857
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/212 (27%), Positives = 84/212 (39%), Gaps = 46/212 (21%)
Query: 17 LNEKIKKDE-LKKSLYAIFSQFGQILDI-----LVSRSLKMRGQAFVIFKEVSSATNALR 70
+ E +KK E L K++ +F ++ L LK A+ F E+ +
Sbjct: 615 VQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLK--- 671
Query: 71 SMQGFPFYDK--PMRIQYAKTDSDIIAKMKGTFVERDR---------KREKRKPKSQETP 119
+G FY++ + +++ SDI+ K ERD RE P S TP
Sbjct: 672 --EGTKFYNELTEILVRFQNKCSDIVFARK---TERDELLKDLQQSIAREPSAP-SIPTP 725
Query: 120 ATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIP----PPGL 175
A + + GG A P T APR M QPP PPP ++P P
Sbjct: 726 AYQSSPAGGHAPT-------------PPTPAPRTMPPTKPQPPARPPPPVLPANRAPSAT 772
Query: 176 APGQIPPG-AMPPQQLMPGQMPPAQPLSENPP 206
AP + G A P PG PP P ++ PP
Sbjct: 773 APSPVGAGTAAPAPSQTPGSAPP--PQAQGPP 802
Score = 31.2 bits (69), Expect = 1.1
Identities = 29/95 (30%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 113 PKSQETPATKKAVQGGGATPVVGAVQGP----VPGMPPMTQAPRIM---------HHMPG 159
P T A + G A P QGP PG P Q P M ++MP
Sbjct: 776 PVGAGTAAPAPSQTPGSAPPP--QAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPY 833
Query: 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQ 194
P Y PG P PG P P Q P Q
Sbjct: 834 PPVYHQSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ 868
Score = 30.4 bits (67), Expect = 1.8
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 113 PKSQETPATKKAVQGGG-ATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIP 171
P ++ AT + G G A P G P PP Q P + PG P Y P +
Sbjct: 764 PANRAPSATAPSPVGAGTAAPAPSQTPGSAP--PPQAQGPPYPTY-PGYPGYCQMPMPMG 820
Query: 172 PPGLAPGQIPPGAMPPQQLMPGQMP---PAQP 200
A GQ P PGQ P P QP
Sbjct: 821 YNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQP 852
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,555,246
Number of Sequences: 37866
Number of extensions: 909845
Number of successful extensions: 15161
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 944
Number of HSP's that attempted gapping in prelim test: 6586
Number of HSP's gapped (non-prelim): 5308
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.