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Search of human proteins with 4758456
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758456 golgi SNAP receptor complex member 1 isoform 1 [Homo
sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758456 golgi SNAP receptor complex member 1 isoform 1 [Homo ... 491 e-139
gi|55770858 golgi SNAP receptor complex member 1 isoform 2 [Homo... 482 e-136
gi|55770856 golgi SNAP receptor complex member 1 isoform 3 [Homo... 363 e-100
gi|55770834 centromere protein F [Homo sapiens] 46 3e-05
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 36 0.036
gi|71061468 centromere protein E [Homo sapiens] 33 0.23
gi|50083279 centrosome protein 4 [Homo sapiens] 33 0.23
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 33 0.30
gi|197313728 pleckstrin homology-like domain, family B, member 2... 31 0.89
gi|21955172 pleckstrin homology-like domain, family B, member 2 ... 31 0.89
gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo... 31 1.2
gi|7662160 hypothetical protein LOC9813 [Homo sapiens] 30 1.5
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 30 2.0
gi|112420968 coiled-coil domain containing 158 [Homo sapiens] 30 2.6
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 30 2.6
gi|155722985 SMC5 protein [Homo sapiens] 30 2.6
gi|151101151 coiled-coil domain containing 2 isoform b [Homo sap... 30 2.6
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap... 30 2.6
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap... 30 2.6
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap... 30 2.6
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 29 3.4
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 29 3.4
gi|62899065 centrosomal protein 72 kDa [Homo sapiens] 29 3.4
gi|45827771 autoantigen RCD8 [Homo sapiens] 29 3.4
gi|130980075 centromere protein J [Homo sapiens] 29 4.4
gi|38788260 bromodomain PHD finger transcription factor isoform ... 29 4.4
gi|38788274 bromodomain PHD finger transcription factor isoform ... 29 4.4
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 29 4.4
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens] 29 4.4
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 29 4.4
>gi|4758456 golgi SNAP receptor complex member 1 isoform 1 [Homo
sapiens]
Length = 250
Score = 491 bits (1265), Expect = e-139
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNG 60
MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNG
Sbjct: 1 MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNG 60
Query: 61 SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH 120
SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH
Sbjct: 61 SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH 120
Query: 121 EFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET 180
EFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET
Sbjct: 121 EFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET 180
Query: 181 ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC 240
ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC
Sbjct: 181 ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC 240
Query: 241 TILLLLYAFH 250
TILLLLYAFH
Sbjct: 241 TILLLLYAFH 250
>gi|55770858 golgi SNAP receptor complex member 1 isoform 2 [Homo
sapiens]
Length = 248
Score = 482 bits (1240), Expect = e-136
Identities = 248/250 (99%), Positives = 248/250 (99%), Gaps = 2/250 (0%)
Query: 1 MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNG 60
MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRD SSDTTPLLNG
Sbjct: 1 MAAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRD--SSDTTPLLNG 58
Query: 61 SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH 120
SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH
Sbjct: 59 SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH 118
Query: 121 EFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET 180
EFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET
Sbjct: 119 EFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEET 178
Query: 181 ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC 240
ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC
Sbjct: 179 ISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGIC 238
Query: 241 TILLLLYAFH 250
TILLLLYAFH
Sbjct: 239 TILLLLYAFH 248
>gi|55770856 golgi SNAP receptor complex member 1 isoform 3 [Homo
sapiens]
Length = 185
Score = 363 bits (931), Expect = e-100
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 66 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 125
MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT
Sbjct: 1 MFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKT 60
Query: 126 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 185
KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM
Sbjct: 61 KANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAM 120
Query: 186 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 245
ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL
Sbjct: 121 ATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLL 180
Query: 246 LYAFH 250
LYAFH
Sbjct: 181 LYAFH 185
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 45.8 bits (107), Expect = 3e-05
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 11/174 (6%)
Query: 61 SSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNA-ALMHTLQRHRDILQDYT 119
S Q R F+T+ E Q+ ARLT ++ + N V L Q+ + L+++
Sbjct: 401 SRQQRSFQTLDQECIQMKARLT---QELQQAKNMHNVLQAELDKLTSVKQQLENNLEEFK 457
Query: 120 HEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL----RNSDR 175
+ + + F A + +EN +R+ +E K + + +E +E HL +N +
Sbjct: 458 QKLCRAEQAFQASQIKEN---ELRRSMEEMKKENNLLKSHSEQKAREVCHLEAELKNIKQ 514
Query: 176 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRD 229
+ ++ + A K TSQ ML+ + K+N N + +L K+RD
Sbjct: 515 CLNQSQNFAEEMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLAVADLEKQRD 568
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 35.8 bits (81), Expect = 0.036
Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 17/241 (7%)
Query: 9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLL-----NGSSQ 63
WE+L+K+A L+ E+ S+ T T+ SD+ + + +++
Sbjct: 454 WEELKKKAAGLQAEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAK 513
Query: 64 DRMFETMAIEIEQLLARL----TGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYT 119
++ + E++ L RL T +N K + + A A +H L+ D+ +
Sbjct: 514 EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKV 573
Query: 120 HEFHKTKANFM-AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEH---DHLRNSDR 175
+ K N +R++E M S+++ ++S ++ + N T L E + R +R
Sbjct: 574 NVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADT--TNTDTALTTLEEALAEKERTIER 631
Query: 176 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGG 235
L E+ +E + + + LK + K++ L + + ++L++ SL G
Sbjct: 632 LKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASL--LDLKEHASSLASSG 689
Query: 236 V 236
+
Sbjct: 690 L 690
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 132 IRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENM 191
+ E+E + +++K +E+ + N+ E++ KE ++E ++ KE+
Sbjct: 1500 LSEKETEISTIQKQLEAINDK--LQNKIQEIYEKEEQFNIKQISEVQEKVNELKQFKEHR 1557
Query: 192 TSQRGMLKSIHSKMNTLANRFPAVNSLIQ 220
++ L+SI SKM L NR IQ
Sbjct: 1558 KAKDSALQSIESKMLELTNRLQESQEEIQ 1586
Score = 28.1 bits (61), Expect = 7.5
Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 28/230 (12%)
Query: 10 EDLRKQARQLENELDLKLVSFSKLCTSYSHSSTR--------DGRRDRYSSDTTPLLNGS 61
E LRK+ + EL + KL + H +R +D ++ + +
Sbjct: 757 ERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLATTQSNYKSTD 816
Query: 62 SQDRMFETMAIEIEQLLARLTGVNDKM-AEYTN----SAGVPSLNAALMHTLQRHRDILQ 116
+ + F+T+ ++ EQ + N++M E N + S AL L LQ
Sbjct: 817 QEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQ 876
Query: 117 DYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRT----ELFLKEHDHLRN 172
+ T E + ++E+ S + +E K+ ++T + +E D L+
Sbjct: 877 EKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQ 936
Query: 173 --------SDRL---IEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 211
D+L I +T+++ + T+E + + LK +NTL ++
Sbjct: 937 LQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINTLKSK 986
>gi|50083279 centrosome protein 4 [Homo sapiens]
Length = 1140
Score = 33.1 bits (74), Expect = 0.23
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 105 MHTLQRHRDILQDYTHEFHKTKANFMAIRERE------NLMGSVRKDIESYKSGSGVNNR 158
+H LQ +++ ++ K + +RERE L G D+ S +S + N +
Sbjct: 213 VHQLQEKLAMMESGVRDYSKQ----IELREREIERLSVALDGGRSPDVLSLESRNKTNEK 268
Query: 159 RTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSL 218
+ D L+ +++ +E+ I M TKE +TS+ + ++ +K L ++ L
Sbjct: 269 LIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSE---VVNLSNKNEKLCQELTEIDQL 325
Query: 219 IQRINLRK 226
Q++ K
Sbjct: 326 AQQLERHK 333
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 32.7 bits (73), Expect = 0.30
Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 65 RMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHK 124
+M + +A + E L +L N K++ S+G R+ +Q+ + +
Sbjct: 1121 KMMDIVAAK-EAALIKLQDENKKLSTRFESSGQDMF-----------RETIQNLSRIIRE 1168
Query: 125 TKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIA 184
A+ ++ + +V + + GVN+ + E L+E D L+ + +EE
Sbjct: 1169 KDIEIDALSQKCQTLLAVLQTSSTGNEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQV 1228
Query: 185 MATKENMTSQRGMLK 199
M T +NM + L+
Sbjct: 1229 MTTVQNMQHESAQLQ 1243
>gi|197313728 pleckstrin homology-like domain, family B, member 2
isoform b [Homo sapiens]
Length = 1237
Score = 31.2 bits (69), Expect = 0.89
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 25/177 (14%)
Query: 57 LLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYT-NSAGVPSLNAALMHTLQRHRDIL 115
LL+G + E M + +++L L N K+AE N G + +A L+ +H + L
Sbjct: 655 LLDGEQKSETTELM--KEKEILDHL---NRKIAELEKNIVGEKTKDADLLDVESKHFEDL 709
Query: 116 QDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL----- 170
EF + + E+ENL + +++ Y+ + K+ +H+
Sbjct: 710 -----EFQQLEHESRLDEEKENLTQQLLREVAEYQRNIVSRKEKISALKKQANHIVQQAQ 764
Query: 171 RNSDRLIEETISIAM---ATKENMTSQRGMLKSIHS------KMNTLANRFPAVNSL 218
R D ++E ++ M KEN+ + S+ NTL + +VN +
Sbjct: 765 REQDHFVKEKNNLIMMLQREKENLCNLEKKYSSLSGGKGFPVNPNTLKEGYISVNEI 821
>gi|21955172 pleckstrin homology-like domain, family B, member 2
isoform c [Homo sapiens]
Length = 1210
Score = 31.2 bits (69), Expect = 0.89
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 25/177 (14%)
Query: 57 LLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYT-NSAGVPSLNAALMHTLQRHRDIL 115
LL+G + E M + +++L L N K+AE N G + +A L+ +H + L
Sbjct: 628 LLDGEQKSETTELM--KEKEILDHL---NRKIAELEKNIVGEKTKDADLLDVESKHFEDL 682
Query: 116 QDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL----- 170
EF + + E+ENL + +++ Y+ + K+ +H+
Sbjct: 683 -----EFQQLEHESRLDEEKENLTQQLLREVAEYQRNIVSRKEKISALKKQANHIVQQAQ 737
Query: 171 RNSDRLIEETISIAM---ATKENMTSQRGMLKSIHS------KMNTLANRFPAVNSL 218
R D ++E ++ M KEN+ + S+ NTL + +VN +
Sbjct: 738 REQDHFVKEKNNLIMMLQREKENLCNLEKKYSSLSGGKGFPVNPNTLKEGYISVNEI 794
>gi|16905522 golgi SNAP receptor complex member 2 isoform A [Homo
sapiens]
Length = 212
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/147 (19%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 104 LMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELF 163
L + +Q + L+++ H H A R+RE L+ ++ + +
Sbjct: 73 LKYDVQHLQTALRNFQHRRH---AREQQERQREELLS------RTFTTNDSDTTIPMDES 123
Query: 164 LKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRIN 223
L+ + L+ +++ I + + +QR LK K+ +AN N++++ I
Sbjct: 124 LQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMRLIE 183
Query: 224 LRKRRDS-LILGGVIGICTILLLLYAF 249
R +D ++GG++ C ++ L+ +
Sbjct: 184 KRAFQDKYFMIGGMLLTCVVMFLVVQY 210
>gi|7662160 hypothetical protein LOC9813 [Homo sapiens]
Length = 495
Score = 30.4 bits (67), Expect = 1.5
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 126 KANFMAIRERENLMGSVRKDIESYKSGS-GVN---------NRRTELFLKEHDHLRNSDR 175
K++F I + + S +K +E +SG G+N N++ L +HL+ + +
Sbjct: 117 KSSFQEIPKLNEELLSKQKQLEKIESGEMGLNKVWINITEMNKQISLLTSAVNHLKANVK 176
Query: 176 LIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 232
+ IS+ T+ G+ KS+ S NTL + AV +L + ++ K+ L+
Sbjct: 177 SAADLISLP-------TTVEGLQKSVASIGNTLNSVHLAVEALQKTVDEHKKTMELL 226
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 93 NSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSG 152
NS G S + HT+ +HR I+ Y H+ KA F R +V+ I +G
Sbjct: 949 NSKGSTSEKDGMHHTVTKHRGIITLYRHQ----KAAFAITSRRGPTPKAVKAQIADLPAG 1004
Query: 153 SGVN 156
S N
Sbjct: 1005 SSGN 1008
>gi|112420968 coiled-coil domain containing 158 [Homo sapiens]
Length = 1113
Score = 29.6 bits (65), Expect = 2.6
Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 29/158 (18%)
Query: 73 EIEQLLARLTGVNDKMAEYTNSAGVPSLNAA---------LMHTLQRHRDILQDYTHEFH 123
+I +L AR++ + + + N AG L A L++ ++ R L + + E+
Sbjct: 619 KIRELEARVSDLELEKVKLVN-AGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYE 677
Query: 124 KTKANFM-AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIE---- 178
K NF E E ++ ++S +S E + RN+ + +E
Sbjct: 678 VLKRNFRNKSEEMEMTTNKLKMQLKSAQS--------------ELEQTRNTLKSMEGSDG 723
Query: 179 ETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVN 216
+ +AM ++ +T++RG + ++ SK+ L N
Sbjct: 724 HAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
Score = 29.3 bits (64), Expect = 3.4
Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 30/205 (14%)
Query: 10 EDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGR---RDRYSSDTTPLLNGSSQDRM 66
+ +++ L+++L L K S ++ R RD +S T L +R
Sbjct: 366 DQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRN 425
Query: 67 FETMAIE-------------IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRD 113
E +E +E+ +A + G N+ + + V SL A L T + R
Sbjct: 426 MEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEK------VSSLTAQLESTKEMLRK 479
Query: 114 ILQDYTHEFHKTKANFMAI-------RERENLMGSVRKDIESYKSGSGVNNRRTELFLKE 166
++++ T + +++ I +E+E + + +I +S + + + E
Sbjct: 480 VVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE 539
Query: 167 HDHLRNSDRLIEETISIAMATKENM 191
DHLRN E + + M K+ +
Sbjct: 540 GDHLRNVQTEC-EALKLQMTEKDKV 563
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 131 AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKEN 190
A RE++ L+ V++ + + +++ E KEH HL S++ + E + A K
Sbjct: 952 ARREKQQLL-DVQRQVALKSEEATATHQQLEEAQKEHTHLLQSNQQLREILDELQARKLK 1010
Query: 191 MTSQRGMLKS 200
+ SQ +L++
Sbjct: 1011 LESQVDLLQA 1020
>gi|155722985 SMC5 protein [Homo sapiens]
Length = 1101
Score = 29.6 bits (65), Expect = 2.6
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 133 RERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDH-LRNSDRLIEETISIAMATKENM 191
R E + + + +++ SG + R T L+ D+ LR + + E + ++ +
Sbjct: 653 RHLEEQLKEIHRKLQAVDSGL-IALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKI 711
Query: 192 TSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTIL 243
+S+ G LK + L ++ I+ IN++K + L +I ICT L
Sbjct: 712 SSKLGSLKLMEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSL 763
>gi|151101151 coiled-coil domain containing 2 isoform b [Homo
sapiens]
Length = 372
Score = 29.6 bits (65), Expect = 2.6
Identities = 33/173 (19%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 62 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 121
S ++ ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 131 SYEKRAETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRE 183
Query: 122 FHKTKANFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEE 179
F + +E + SV ++IE K + + N E +K + +++L++E
Sbjct: 184 TQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQE 243
Query: 180 TISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 232
++ ++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 244 LDTL----QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 2.6
Identities = 33/173 (19%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 62 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 121
S ++ ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 131 SYEKRAETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRE 183
Query: 122 FHKTKANFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEE 179
F + +E + SV ++IE K + + N E +K + +++L++E
Sbjct: 184 TQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQE 243
Query: 180 TISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 232
++ ++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 244 LDTL----QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 2.6
Identities = 33/173 (19%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 62 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 121
S ++ ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 131 SYEKRAETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRE 183
Query: 122 FHKTKANFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEE 179
F + +E + SV ++IE K + + N E +K + +++L++E
Sbjct: 184 TQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQE 243
Query: 180 TISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 232
++ ++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 244 LDTL----QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 2.6
Identities = 33/173 (19%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 62 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 121
S ++ ET+A+EI++L +L A+Y + N + + + + E
Sbjct: 131 SYEKRAETLAVEIKELQGQL-------ADYNMLVDKLNTNTEMEEVMNDYNMLKAQNDRE 183
Query: 122 FHKTKANFMAIRERENLMGSVRKDIESYKSGSG--VNNRRTELFLKEHDHLRNSDRLIEE 179
F + +E + SV ++IE K + + N E +K + +++L++E
Sbjct: 184 TQSLDVIFTERQAKEKQIRSVEEEIEQEKQATDDIIKNMSFENQVKYLEMKTTNEKLLQE 243
Query: 180 TISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLI 232
++ ++ + SQ +S+ +++ + AV + L RD +I
Sbjct: 244 LDTL----QQQLDSQNMKKESLEAEIAHSQVKQEAVLLHEKLYELESHRDQMI 292
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 29.3 bits (64), Expect = 3.4
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 58 LNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLN---------------- 101
+ G R+ T E+E+LL RL G+ D + + V L+
Sbjct: 1003 VRGRRPRRLALTARPELEELLERLHGLQDGLVDVLRHHRVVRLHPQLAGACDGRAAHLDE 1062
Query: 102 --------AALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENL 138
AA +H LQRHR +L HE + + R+ L
Sbjct: 1063 EEAVRVAAAADVHELQRHRRLLAVELHEADGARRQAQTVHPRQVL 1107
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 29.3 bits (64), Expect = 3.4
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 58 LNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLN---------------- 101
+ G R+ T E+E+LL RL G+ D + + V L+
Sbjct: 1003 VRGRRPRRLALTARPELEELLERLHGLQDGLVDVLRHHRVVRLHPQLAGACDGRAAHLDE 1062
Query: 102 --------AALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENL 138
AA +H LQRHR +L HE + + R+ L
Sbjct: 1063 EEAVRVAAAADVHELQRHRRLLAVELHEADGARRQAQTVHPRQVL 1107
>gi|62899065 centrosomal protein 72 kDa [Homo sapiens]
Length = 647
Score = 29.3 bits (64), Expect = 3.4
Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 99 SLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRER-----------ENLMGSVRKDIE 147
SL + L Q+H + + T E H T +R+ ++L+ S++K+++
Sbjct: 483 SLQSRLAEQQQQHAREMSEVTAELHHTHKELDDLRQHLDKSLEENSRLKSLLLSMKKEVK 542
Query: 148 SYKSGSGVNNRRTEL----------------FLKEHDHLRNSDRLIEETISIAMATKENM 191
S + + +N + L L+ +D ++ ++++E+ S ++T E++
Sbjct: 543 SADTAATLNLQIAGLQTSVKRLCGEIVELKQHLEHYDKIQELTQMLQESHSSLVSTNEHL 602
Query: 192 TSQRGMLKSIH 202
+ +++ H
Sbjct: 603 LQELSQVRAQH 613
>gi|45827771 autoantigen RCD8 [Homo sapiens]
Length = 1401
Score = 29.3 bits (64), Expect = 3.4
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 62 SQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHE 121
SQ+ + + + ++E L + +TG ++ E + L AL QR + + T +
Sbjct: 967 SQEELLQRLCTQLEGLQSTVTGHVERALETRHEQEQRRLERALAEGQQRGGQLQEQLTQQ 1026
Query: 122 FHKTKANFMAIRERENLMGSVRKDIESYKS-------GSGVNNRRTELFLKEHDHLRNSD 174
+ ++ +A R ++ ++K + S G N+ T+L E N
Sbjct: 1027 LSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPMAGQLSNSVATKLTAVEGSMKENIS 1086
Query: 175 RLIEE---TISIAMATKENM 191
+L++ T +IA A + +
Sbjct: 1087 KLLKSKNLTDAIARAAADTL 1106
>gi|130980075 centromere protein J [Homo sapiens]
Length = 1338
Score = 28.9 bits (63), Expect = 4.4
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 115 LQDYTHEFHKTKANFMAIR-ERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNS 173
L+ +F A+ +R ERE+ + +RK+I ++ R E F KE
Sbjct: 913 LETEIEKFKAENASLAKLRIERESALEKLRKEIADFEQQKAKELARIEEFKKEEMRKLQK 972
Query: 174 DRLIEETISIAMAT-------------KENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQ 220
+R + E + A T K+ + R LK +K ++ +R + ++
Sbjct: 973 ERKVFEKYTTAARTFPDKKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLV 1032
Query: 221 RINLRKRRDSLIL 233
R N R + ++
Sbjct: 1033 RENTDLREEIKVM 1045
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 28.9 bits (63), Expect = 4.4
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 108 LQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK---DIESYKSGSGVNNRRTELFL 164
+ RH DI +D T++ + +F+A E ++ S+R DI++ KS + E
Sbjct: 527 IHRHMDITEDLTNKARGSNKSFLA-AANEEILESIRAKKGDIDNVKSPEETEKDKNETEN 585
Query: 165 KEHDHLRNSDRLIEETI 181
D +N + ++++
Sbjct: 586 DSKDAEKNREEFEDQSL 602
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 28.9 bits (63), Expect = 4.4
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 108 LQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK---DIESYKSGSGVNNRRTELFL 164
+ RH DI +D T++ + +F+A E ++ S+R DI++ KS + E
Sbjct: 527 IHRHMDITEDLTNKARGSNKSFLA-AANEEILESIRAKKGDIDNVKSPEETEKDKNETEN 585
Query: 165 KEHDHLRNSDRLIEETI 181
D +N + ++++
Sbjct: 586 DSKDAEKNREEFEDQSL 602
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 28.9 bits (63), Expect = 4.4
Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 44/180 (24%)
Query: 65 RMFETMAIEIEQLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH 120
++ E E E+L A L ++DK+ E + SAG +L+ ++H LQ+
Sbjct: 2099 QLMEKSQKEYEKLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAK 2154
Query: 121 EFHKTKANFM----------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL 170
+ + K N A EN++ +++ ++ + + + +KE
Sbjct: 2155 QLEEIKRNASGDELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPR 2214
Query: 171 R------NSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 224
+ NSD+L+ E K+ ++ PA+N+L Q +N+
Sbjct: 2215 KAKTLSSNSDKLLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 2254
>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
Length = 1668
Score = 28.9 bits (63), Expect = 4.4
Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 44/180 (24%)
Query: 65 RMFETMAIEIEQLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH 120
++ E E E+L A L ++DK+ E + SAG +L+ ++H LQ+
Sbjct: 434 QLMEKSQKEYEKLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAK 489
Query: 121 EFHKTKANFM----------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL 170
+ + K N A EN++ +++ ++ + + + +KE
Sbjct: 490 QLEEIKRNASGDELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPR 549
Query: 171 R------NSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 224
+ NSD+L+ E K+ ++ PA+N+L Q +N+
Sbjct: 550 KAKTLSSNSDKLLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 589
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 28.9 bits (63), Expect = 4.4
Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 44/180 (24%)
Query: 65 RMFETMAIEIEQLLARLT----GVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTH 120
++ E E E+L A L ++DK+ E + SAG +L+ ++H LQ+
Sbjct: 2043 QLMEKSQKEYEKLAASLNEARQELSDKVRELSRSAG----KTSLVEEAEKHARSLQELAK 2098
Query: 121 EFHKTKANFM----------AIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHL 170
+ + K N A EN++ +++ ++ + + + +KE
Sbjct: 2099 QLEEIKRNASGDELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPR 2158
Query: 171 R------NSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINL 224
+ NSD+L+ E K+ ++ PA+N+L Q +N+
Sbjct: 2159 KAKTLSSNSDKLLNEAKMTQKKLKQEVS--------------------PALNNLQQTLNI 2198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,818,070
Number of Sequences: 37866
Number of extensions: 290950
Number of successful extensions: 1059
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 60
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.