Guide to the Human Genome
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Name: SLC3A1 Sequence: fasta or formatted (685aa) NCBI GI: 187423904
Description:

solute carrier family 3, member 1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         26           2
 C cysteine            1.2          8           1
 D aspartate           6.9         47           1
 E glutamate           5.4         37           2
 F phenylalanine       5.1         35           1
 G glycine             6.1         42           2
 H histidine           2.8         19           1
 I isoleucine          6.3         43           2
 K lysine              5.0         34           1
 L leucine             8.8         60           3
 M methionine          3.1         21           1
 N asparagine          6.6         45           2
 P proline             4.1         28           2
 Q glutamine           3.9         27           1
 R arginine            4.8         33           1
 S serine              7.7         53           2
 T threonine           6.6         45           3
 V valine              5.3         36           2
 W tryptophan          2.2         15           2
 Y tyrosine            4.5         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 3, member 1 
SLC3A2                0.072   solute carrier family 3, member 2 isoform f 
SLC3A2                0.072   solute carrier family 3, member 2 isoform e 
SLC3A2                0.072   solute carrier family 3, member 2 isoform d 
SLC3A2                0.072   solute carrier family 3, member 2 isoform c 
SLC3A2                0.072   solute carrier family 3, member 2 isoform b 
SLC3A2                0.072   solute carrier family 3, member 2 isoform a 
GBE1                  0.005   glucan (1,4-alpha-), branching enzyme 1 
SCN2A                 0.004   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.004   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.004   sodium channel, voltage-gated, type II, alpha isofor...
EFNB2                 0.004   ephrin B2 
TXLNB                 0.004   taxilin beta 
SLC26A8               0.004   solute carrier family 26, member 8 isoform a 
SLC26A8               0.004   solute carrier family 26, member 8 isoform b 
MYST4                 0.004   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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