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Search of human proteins with 4757702
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4757702 eukaryotic translation initiation factor 4E member 2
[Homo sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4757702 eukaryotic translation initiation factor 4E member 2 ... 513 e-146
gi|150378456 eukaryotic translation initiation factor 4E family ... 131 6e-31
gi|194578907 eukaryotic translation initiation factor 4E isoform... 129 2e-30
gi|4503535 eukaryotic translation initiation factor 4E isoform 1... 129 2e-30
gi|169211405 PREDICTED: similar to hCG1777996 [Homo sapiens] 129 2e-30
gi|169211874 PREDICTED: similar to hCG1777996 [Homo sapiens] 129 2e-30
gi|169210992 PREDICTED: hypothetical protein LOC100131693 [Homo ... 129 2e-30
gi|194578909 eukaryotic translation initiation factor 4E isoform... 117 9e-27
gi|197382708 eukaryotic translation initiation factor 4E family ... 104 8e-23
gi|197382664 eukaryotic translation initiation factor 4E family ... 69 3e-12
gi|197382649 eukaryotic translation initiation factor 4E family ... 69 3e-12
gi|27659734 eukaryotic translation initiation factor 4E family m... 69 3e-12
gi|48717285 hypothetical protein LOC389763 [Homo sapiens] 34 0.13
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 33 0.29
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens] 33 0.29
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] 33 0.29
gi|134142826 pericentriolar material 1 [Homo sapiens] 32 0.50
gi|194097398 protein tyrosine phosphatase, receptor type, G prec... 32 0.66
gi|56676330 HP1-BP74 [Homo sapiens] 32 0.66
gi|56790935 hypothetical protein LOC85369 [Homo sapiens] 31 0.86
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 31 1.1
gi|4557509 cylicin 2 [Homo sapiens] 31 1.1
gi|116256485 chromosome 6 open reading frame 10 [Homo sapiens] 31 1.1
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 31 1.1
gi|193788697 hypothetical protein LOC140688 [Homo sapiens] 30 1.9
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 30 1.9
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 30 1.9
gi|115529449 upstream binding transcription factor, RNA polymera... 30 1.9
gi|115529451 upstream binding transcription factor, RNA polymera... 30 1.9
gi|7657671 upstream binding transcription factor, RNA polymerase... 30 1.9
>gi|4757702 eukaryotic translation initiation factor 4E member 2
[Homo sapiens]
Length = 245
Score = 513 bits (1320), Expect = e-146
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNY 60
MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNY
Sbjct: 1 MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNY 60
Query: 61 TFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGI 120
TFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGI
Sbjct: 61 TFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGI 120
Query: 121 KPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDII 180
KPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDII
Sbjct: 121 KPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDII 180
Query: 181 SIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGPQRLLFQNLWKP 240
SIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGPQRLLFQNLWKP
Sbjct: 181 SIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGPQRLLFQNLWKP 240
Query: 241 RLNVP 245
RLNVP
Sbjct: 241 RLNVP 245
>gi|150378456 eukaryotic translation initiation factor 4E family
member 1B [Homo sapiens]
Length = 242
Score = 131 bits (329), Expect = 6e-31
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 16/230 (6%)
Query: 15 DHDQNEENSTQKDGEKEKTERDKNQSSSKR-KAVVPGPAE-----HPLQYNYTFWYSRRT 68
+ ++ EE + ++ EK+ S R KA GP E HPLQ + W+ +
Sbjct: 17 EEEEKEEEAAERTPTGEKSPNSPRTLLSLRGKARTGGPMEVKLELHPLQNRWALWFFKND 76
Query: 69 PGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA 128
S++++ N+ + +VE FW YSH+ L+ D+ LFK+GI+PMWED
Sbjct: 77 -----RSRAWQDNLHLVTKVDTVEDFWALYSHIQLASKLSSGCDYALFKDGIQPMWEDSR 131
Query: 129 NKNGGKWIIRLRKGL----ASRCWENLILAMLGEQFMV-GEEICGAVVSVRFQEDIISIW 183
NK GG+W++ L K R W +L ++GE F E+CGAVV++R + D I++W
Sbjct: 132 NKRGGRWLVSLAKQQRHIELDRLWLETLLCLIGESFEEHSREVCGAVVNIRTKGDKIAVW 191
Query: 184 NKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGPQRLL 233
+ A +QA + + L L P TI+ Y+ H D+ L + +
Sbjct: 192 TREAENQAGVLHVGRVYKERLGLSPKTIIGYQAHADTATKSNSLAKNKFV 241
>gi|194578907 eukaryotic translation initiation factor 4E isoform 3
[Homo sapiens]
Length = 237
Score = 129 bits (325), Expect = 2e-30
Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 16/210 (7%)
Query: 29 EKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTF 88
E+EKTE ++ ++ + +HPLQ + W+ + S++++ N++ I F
Sbjct: 38 EEEKTESNQEVANPEHYI------KHPLQNRWALWFFKN-----DKSKTWQANLRLISKF 86
Query: 89 ASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRL----RKGLA 144
+VE FW Y+H+ +L D+ LFK+GI+PMWED+ NK GG+W+I L R+
Sbjct: 87 DTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDL 146
Query: 145 SRCWENLILAMLGEQF-MVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRV 203
R W +L ++GE F +++CGAVV+VR + D I+IW ++ I +
Sbjct: 147 DRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKER 206
Query: 204 LNLPPNTIMEYKTHTDSIKMPGRLGPQRLL 233
L LPP ++ Y++H D+ G R +
Sbjct: 207 LGLPPKIVIGYQSHADTATKSGSTTKNRFV 236
>gi|4503535 eukaryotic translation initiation factor 4E isoform 1
[Homo sapiens]
Length = 217
Score = 129 bits (325), Expect = 2e-30
Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 16/210 (7%)
Query: 29 EKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTF 88
E+EKTE ++ ++ + +HPLQ + W+ + S++++ N++ I F
Sbjct: 18 EEEKTESNQEVANPEHYI------KHPLQNRWALWFFKN-----DKSKTWQANLRLISKF 66
Query: 89 ASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRL----RKGLA 144
+VE FW Y+H+ +L D+ LFK+GI+PMWED+ NK GG+W+I L R+
Sbjct: 67 DTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDL 126
Query: 145 SRCWENLILAMLGEQF-MVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRV 203
R W +L ++GE F +++CGAVV+VR + D I+IW ++ I +
Sbjct: 127 DRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKER 186
Query: 204 LNLPPNTIMEYKTHTDSIKMPGRLGPQRLL 233
L LPP ++ Y++H D+ G R +
Sbjct: 187 LGLPPKIVIGYQSHADTATKSGSTTKNRFV 216
>gi|169211405 PREDICTED: similar to hCG1777996 [Homo sapiens]
Length = 217
Score = 129 bits (324), Expect = 2e-30
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 16/210 (7%)
Query: 29 EKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTF 88
EKEKTE ++ ++ + +HPLQ + W+ + S++++ N+ I F
Sbjct: 18 EKEKTESNQEVANPEHYI------KHPLQNRWALWFFKND-----KSKTWQANLWLISKF 66
Query: 89 ASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRL----RKGLA 144
+VE FW Y+H+ +L D+ LFK+GI+PMWED+ NK GG+W+I L R+
Sbjct: 67 DTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDL 126
Query: 145 SRCWENLILAMLGEQF-MVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRV 203
R W +L ++GE F +++CGAVV+VR + D I+IW ++ I +
Sbjct: 127 DRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKER 186
Query: 204 LNLPPNTIMEYKTHTDSIKMPGRLGPQRLL 233
L LPP ++ Y++H D+ G R +
Sbjct: 187 LGLPPKIVIGYQSHADTATKSGSTTKNRFV 216
>gi|169211874 PREDICTED: similar to hCG1777996 [Homo sapiens]
Length = 217
Score = 129 bits (324), Expect = 2e-30
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 16/210 (7%)
Query: 29 EKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTF 88
EKEKTE ++ ++ + +HPLQ + W+ + S++++ N+ I F
Sbjct: 18 EKEKTESNQEVANPEHYI------KHPLQNRWALWFFKND-----KSKTWQANLWLISKF 66
Query: 89 ASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRL----RKGLA 144
+VE FW Y+H+ +L D+ LFK+GI+PMWED+ NK GG+W+I L R+
Sbjct: 67 DTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDL 126
Query: 145 SRCWENLILAMLGEQF-MVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRV 203
R W +L ++GE F +++CGAVV+VR + D I+IW ++ I +
Sbjct: 127 DRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKER 186
Query: 204 LNLPPNTIMEYKTHTDSIKMPGRLGPQRLL 233
L LPP ++ Y++H D+ G R +
Sbjct: 187 LGLPPKIVIGYQSHADTATKSGSTTKNRFV 216
>gi|169210992 PREDICTED: hypothetical protein LOC100131693 [Homo
sapiens]
Length = 217
Score = 129 bits (324), Expect = 2e-30
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 16/210 (7%)
Query: 29 EKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTF 88
EKEKTE ++ ++ + +HPLQ + W+ + S++++ N+ I F
Sbjct: 18 EKEKTESNQEVANPEHYI------KHPLQNRWALWFFKND-----KSKTWQANLWLISKF 66
Query: 89 ASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRL----RKGLA 144
+VE FW Y+H+ +L D+ LFK+GI+PMWED+ NK GG+W+I L R+
Sbjct: 67 DTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDL 126
Query: 145 SRCWENLILAMLGEQF-MVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRV 203
R W +L ++GE F +++CGAVV+VR + D I+IW ++ I +
Sbjct: 127 DRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKER 186
Query: 204 LNLPPNTIMEYKTHTDSIKMPGRLGPQRLL 233
L LPP ++ Y++H D+ G R +
Sbjct: 187 LGLPPKIVIGYQSHADTATKSGSTTKNRFV 216
>gi|194578909 eukaryotic translation initiation factor 4E isoform 2
[Homo sapiens]
Length = 248
Score = 117 bits (293), Expect = 9e-27
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 47/241 (19%)
Query: 29 EKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTF 88
E+EKTE ++ ++ + +HPLQ + W+ + S++++ N++ I F
Sbjct: 18 EEEKTESNQEVANPEHYI------KHPLQNRWALWFFKN-----DKSKTWQANLRLISKF 66
Query: 89 ASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRK------- 141
+VE FW Y+H+ +L D+ LFK+GI+PMWED+ NK GG+W+I L K
Sbjct: 67 DTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDL 126
Query: 142 ---------------GLASRCWENLI-------------LAMLGEQF-MVGEEICGAVVS 172
L S W +I L ++GE F +++CGAVV+
Sbjct: 127 DRFWLETRWDLAMLPRLVSNFWPQVILPLQPPKVLELQLLCLIGESFDDYSDDVCGAVVN 186
Query: 173 VRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGPQRL 232
VR + D I+IW ++ I + L LPP ++ Y++H D+ G R
Sbjct: 187 VRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRF 246
Query: 233 L 233
+
Sbjct: 247 V 247
>gi|197382708 eukaryotic translation initiation factor 4E family
member 3 isoform a [Homo sapiens]
Length = 224
Score = 104 bits (259), Expect = 8e-23
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 46 AVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPG 105
A+ P P PL ++TFW R PG ++ N+K+I T +V+ FW Y+++
Sbjct: 39 ALQPEPGGVPLHSSWTFWLDRSLPG--ATAAECASNLKKIYTVQTVQIFWSVYNNIPPVT 96
Query: 106 DLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQF----M 161
L +HL + +P+WE+++N GG W +++ K S W+ L+LA +GEQF
Sbjct: 97 SLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAA 156
Query: 162 VGEEICGAVVSVRFQEDIISIWNKTAS--DQATTARIRDTLRRVLNLPPNTIME---YKT 216
+E+ G VSVR +ED++ +WN AS +AT L ++ L P+ + YK
Sbjct: 157 ADDEVIGVSVSVRDREDVVQVWNVNASLVGEAT------VLEKIYELLPHITFKAVFYKP 210
Query: 217 HTDSIKMPGRLG 228
H + G G
Sbjct: 211 HEEHHAFEGGRG 222
>gi|197382664 eukaryotic translation initiation factor 4E family
member 3 isoform b [Homo sapiens]
Length = 118
Score = 69.3 bits (168), Expect = 3e-12
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 121 KPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQF----MVGEEICGAVVSVRFQ 176
+P+WE+++N GG W +++ K S W+ L+LA +GEQF +E+ G VSVR +
Sbjct: 6 RPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEVIGVSVSVRDR 65
Query: 177 EDIISIWNKTAS--DQATTARIRDTLRRVLNLPPNTIME---YKTHTDSIKMPGRLG 228
ED++ +WN AS +AT L ++ L P+ + YK H + G G
Sbjct: 66 EDVVQVWNVNASLVGEAT------VLEKIYELLPHITFKAVFYKPHEEHHAFEGGRG 116
>gi|197382649 eukaryotic translation initiation factor 4E family
member 3 isoform b [Homo sapiens]
Length = 118
Score = 69.3 bits (168), Expect = 3e-12
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 121 KPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQF----MVGEEICGAVVSVRFQ 176
+P+WE+++N GG W +++ K S W+ L+LA +GEQF +E+ G VSVR +
Sbjct: 6 RPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEVIGVSVSVRDR 65
Query: 177 EDIISIWNKTAS--DQATTARIRDTLRRVLNLPPNTIME---YKTHTDSIKMPGRLG 228
ED++ +WN AS +AT L ++ L P+ + YK H + G G
Sbjct: 66 EDVVQVWNVNASLVGEAT------VLEKIYELLPHITFKAVFYKPHEEHHAFEGGRG 116
>gi|27659734 eukaryotic translation initiation factor 4E family
member 3 isoform b [Homo sapiens]
Length = 118
Score = 69.3 bits (168), Expect = 3e-12
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 121 KPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQF----MVGEEICGAVVSVRFQ 176
+P+WE+++N GG W +++ K S W+ L+LA +GEQF +E+ G VSVR +
Sbjct: 6 RPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEVIGVSVSVRDR 65
Query: 177 EDIISIWNKTAS--DQATTARIRDTLRRVLNLPPNTIME---YKTHTDSIKMPGRLG 228
ED++ +WN AS +AT L ++ L P+ + YK H + G G
Sbjct: 66 EDVVQVWNVNASLVGEAT------VLEKIYELLPHITFKAVFYKPHEEHHAFEGGRG 116
>gi|48717285 hypothetical protein LOC389763 [Homo sapiens]
Length = 1576
Score = 33.9 bits (76), Expect = 0.13
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 14 GDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSR------R 67
GD +EN +K G K R Q +S R + +H L ++ FW S+
Sbjct: 423 GDFLMWKENG-KKPGSFPKQLRPNYQLNSSRNMLTSIAVKHDLAESFPFWASKGKLEWQH 481
Query: 68 TPGRPTSSQSYEQNIKQIGTFASVEQFW---RFYSHMVRPGDLT--GHSDFHLFKEGI 120
+P S+ +E +++Q V+ FW +S + P L GHS +F GI
Sbjct: 482 IHQQPPHSKCFEDHLEQ----KYVQLFWGLPSLHSESLHPTVLVQRGHSSMFVFFNGI 535
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 32.7 bits (73), Expect = 0.29
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 10 DDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVV--PGPAEHPLQYN--YTFWYS 65
DDD D D +E++ ++DGE+ E K +RKA V P E P F+
Sbjct: 268 DDDDDDDDDDEDDEDEEDGEE---ENQKRYYLRQRKATVYYQAPLEKPRHQRKPNIFYSG 324
Query: 66 RRTPGRP 72
+P RP
Sbjct: 325 PASPARP 331
>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
Length = 1226
Score = 32.7 bits (73), Expect = 0.29
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 8 LKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHP--LQYNYTFWYS 65
LK+D S + EE ++D EKEK ++ SS + + + P P E LQ Y F
Sbjct: 269 LKEDSSSSEAEEEEE--EEDDEKEK----EDNSSEEEEEIEPFPEERENFLQQLYKFMED 322
Query: 66 RRTP 69
R TP
Sbjct: 323 RGTP 326
>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
Length = 1312
Score = 32.7 bits (73), Expect = 0.29
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 8 LKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHP--LQYNYTFWYS 65
LK+D S + EE ++D EKEK ++ SS + + + P P E LQ Y F
Sbjct: 269 LKEDSSSSEAEEEEE--EEDDEKEK----EDNSSEEEEEIEPFPEERENFLQQLYKFMED 322
Query: 66 RRTP 69
R TP
Sbjct: 323 RGTP 326
>gi|134142826 pericentriolar material 1 [Homo sapiens]
Length = 2024
Score = 32.0 bits (71), Expect = 0.50
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 3 NKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTF 62
N D L + D G + S++K+ +K E DK ++ PG + +TF
Sbjct: 24 NVDDRLNNMDWGAQQKKANRSSEKNKKKFGVESDKRVTNDISPESSPGVGRRRTKTPHTF 83
Query: 63 WYSRRTPGRPTSSQSYEQNIKQIGTFASVEQ 93
+SR Q+ + +KQ F+ ++Q
Sbjct: 84 PHSRYMSQMSVPEQAELEKLKQRINFSDLDQ 114
>gi|194097398 protein tyrosine phosphatase, receptor type, G
precursor [Homo sapiens]
Length = 1445
Score = 31.6 bits (70), Expect = 0.66
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 9 KDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAE 53
KD + + + +E S +DGE+E E + S K K+ V AE
Sbjct: 572 KDGEGTEEGEKDEKSESEDGEREHEEDGEKDSEKKEKSGVTHAAE 616
>gi|56676330 HP1-BP74 [Homo sapiens]
Length = 553
Score = 31.6 bits (70), Expect = 0.66
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 5 FDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPA 52
F + DDS D D++E+ S+++D E E+ K + K A PG A
Sbjct: 423 FPKKEPDDSRDEDEDEDESSEEDSEDEEPP-PKRRLQKKTPAKSPGKA 469
>gi|56790935 hypothetical protein LOC85369 [Homo sapiens]
Length = 837
Score = 31.2 bits (69), Expect = 0.86
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 3 NKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHP 55
N+ D K DDS + ++ ++ +GE ERD+ V+P P +HP
Sbjct: 368 NERDPYKADDSREEEEENDDDNSLEGETFPLERDE---------VMPPPLQHP 411
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 9 KDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRT 68
K++D + + +E +K E+EK E++ ++ ++K K + G AE + R+T
Sbjct: 517 KEEDKAEKTEKKEE--EKKDEEEKDEKEDSKENTKEKDKIDGTAEETEEREQATPRGRKT 574
Query: 69 -------PGRPTSSQSYEQNIKQIGTFASVEQ 93
GR T S + E A+ E+
Sbjct: 575 ANSQGRRKGRITRSMTNEAAAASAAAAAATEE 606
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 30.8 bits (68), Expect = 1.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 4 KFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAE 53
K DA K DS ++E+ +KD +K+K + +K + S+ G E
Sbjct: 165 KKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKDSATESEGEKGGTE 214
Score = 28.5 bits (62), Expect = 5.6
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 2 NNKFDALKDD--DSGDHDQNEENSTQKDGEKEKTERD--KNQSSSKR 44
+ K A KD+ D D ++ ++++T+ +GEK TE+D K + SK+
Sbjct: 180 DEKGGAKKDNKKDKKDSNKGKDSATESEGEKGGTEKDSKKGKKDSKK 226
>gi|116256485 chromosome 6 open reading frame 10 [Homo sapiens]
Length = 563
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 11 DDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAE 53
+D G++D+ +E +KD K K + DKN K K V G E
Sbjct: 494 EDKGNNDKEKERDAEKDPNK-KEKGDKNTKGDKGKDKVKGKRE 535
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 30.8 bits (68), Expect = 1.1
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 7 ALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSK 43
A +DD+ G D+ +++ +K GEKE+ E++K + SK
Sbjct: 304 AAEDDNEG--DKKKKDKKKKKGEKEEKEKEKKKGPSK 338
>gi|193788697 hypothetical protein LOC140688 [Homo sapiens]
Length = 436
Score = 30.0 bits (66), Expect = 1.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 10 DDDSGDHDQNEENSTQKDGEKEKTERDK 37
DDD DHD +E+N D E ER K
Sbjct: 161 DDDDDDHDDHEDNDKMNDSEGMDPERLK 188
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 30.0 bits (66), Expect = 1.9
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 10 DDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTP 69
D D + D+ EE+S Q+ EK + + + S K + A+ + Y+ YS R
Sbjct: 639 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSAR-- 696
Query: 70 GRPTSSQSY 78
SQSY
Sbjct: 697 ----GSQSY 701
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 30.0 bits (66), Expect = 1.9
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 10 DDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTP 69
D D + D+ EE+S Q+ EK + + + S K + A+ + Y+ YS R
Sbjct: 639 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSAR-- 696
Query: 70 GRPTSSQSY 78
SQSY
Sbjct: 697 ----GSQSY 701
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 30.0 bits (66), Expect = 1.9
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 6 DALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQS 40
++ +D+S D D+NEE+ +D +++ E + N+S
Sbjct: 674 ESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNES 708
Score = 28.9 bits (63), Expect = 4.3
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 1 MNNKFDALKDD--DSGDHDQNEENSTQKDGEKEKTERDKNQSSSK 43
+ +K ++ +DD D D D++EE ++G+ + D ++SSS+
Sbjct: 634 LQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 678
Score = 28.1 bits (61), Expect = 7.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 6 DALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSS 42
D +D D + D +E+ + D E E E + + SSS
Sbjct: 679 DESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSS 715
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 30.0 bits (66), Expect = 1.9
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 6 DALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQS 40
++ +D+S D D+NEE+ +D +++ E + N+S
Sbjct: 674 ESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNES 708
Score = 28.9 bits (63), Expect = 4.3
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 1 MNNKFDALKDD--DSGDHDQNEENSTQKDGEKEKTERDKNQSSSK 43
+ +K ++ +DD D D D++EE ++G+ + D ++SSS+
Sbjct: 634 LQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 678
Score = 28.1 bits (61), Expect = 7.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 6 DALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSS 42
D +D D + D +E+ + D E E E + + SSS
Sbjct: 679 DESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSS 715
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 30.0 bits (66), Expect = 1.9
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 6 DALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQS 40
++ +D+S D D+NEE+ +D +++ E + N+S
Sbjct: 711 ESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNES 745
Score = 28.9 bits (63), Expect = 4.3
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 1 MNNKFDALKDD--DSGDHDQNEENSTQKDGEKEKTERDKNQSSSK 43
+ +K ++ +DD D D D++EE ++G+ + D ++SSS+
Sbjct: 671 LQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 715
Score = 28.1 bits (61), Expect = 7.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 6 DALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSS 42
D +D D + D +E+ + D E E E + + SSS
Sbjct: 716 DESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSS 752
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,219,296
Number of Sequences: 37866
Number of extensions: 445220
Number of successful extensions: 2815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2522
Number of HSP's gapped (non-prelim): 278
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.