Guide to the Human Genome
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Name: EIF4E Sequence: fasta or formatted (237aa) NCBI GI: 194578907
Description:

eukaryotic translation initiation factor 4E isoform 3

Referenced in:

Translation Factors

Other entries for this name:
alt prot [248aa] eukaryotic translation initiation factor 4E isoform 2
alt prot [217aa] eukaryotic translation initiation factor 4E isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         14           2
 C cysteine            2.1          5           1
 D aspartate           6.3         15           2
 E glutamate           7.6         18           3
 F phenylalanine       3.8          9           2
 G glycine             5.5         13           2
 H histidine           2.5          6           1
 I isoleucine          4.6         11           1
 K lysine              6.8         16           1
 L leucine             8.4         20           2
 M methionine          1.7          4           1
 N asparagine          5.5         13           1
 P proline             4.2         10           2
 Q glutamine           3.4          8           2
 R arginine            6.3         15           2
 S serine              6.3         15           2
 T threonine           8.0         19           2
 V valine              5.1         12           2
 W tryptophan          3.4          8           1
 Y tyrosine            2.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 4E isoform... 
EIF4E                 0.892   eukaryotic translation initiation factor 4E isoform 1...
LOC100131693          0.884   PREDICTED: similar to hCG1777996 
LOC100131693          0.884   PREDICTED: similar to hCG1777996 
LOC100131693          0.884   PREDICTED: hypothetical protein LOC100131693 
EIF4E                 0.858   eukaryotic translation initiation factor 4E isoform...
EIF4E1B               0.588   eukaryotic translation initiation factor 4E family ...
EIF4E2                0.220   eukaryotic translation initiation factor 4E member 2 ...
EIF4E3                0.127   eukaryotic translation initiation factor 4E family ...
EIF4E3                0.061   eukaryotic translation initiation factor 4E family ...
EIF4E3                0.061   eukaryotic translation initiation factor 4E family ...
EIF4E3                0.061   eukaryotic translation initiation factor 4E family m...
SPHKAP                0.011   sphingosine kinase type 1-interacting protein isofo...
SPHKAP                0.011   sphingosine kinase type 1-interacting protein isofo...
ADIPOR1               0.006   adiponectin receptor 1 
ADIPOR1               0.006   adiponectin receptor 1 
MED12                 0.006   mediator complex subunit 12 
ACCN5                 0.006   amiloride-sensitive cation channel 5, intestinal [Ho...
TTC18                 0.006   tetratricopeptide repeat domain 18 
MSH5                  0.006   mutS homolog 5 isoform c 
MSH5                  0.006   mutS homolog 5 isoform b 
MSH5                  0.006   mutS homolog 5 isoform a 
MSH5                  0.006   mutS homolog 5 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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