Guide to the Human Genome
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Name: LOC100131693 Sequence: fasta or formatted (217aa) NCBI GI: 169210992
Description:

PREDICTED: hypothetical protein LOC100131693

Referenced in:

Translation Factors

Other entries for this name:
alt mRNA [217aa] PREDICTED: similar to hCG1777996
alt mRNA [217aa] PREDICTED: similar to hCG1777996
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         11           1
 C cysteine            1.8          4           1
 D aspartate           6.5         14           2
 E glutamate           7.8         17           1
 F phenylalanine       3.7          8           2
 G glycine             5.1         11           2
 H histidine           2.3          5           1
 I isoleucine          5.1         11           1
 K lysine              7.8         17           1
 L leucine             7.8         17           2
 M methionine          1.4          3           1
 N asparagine          6.0         13           1
 P proline             5.1         11           2
 Q glutamine           3.2          7           2
 R arginine            5.1         11           2
 S serine              5.5         12           2
 T threonine           8.3         18           2
 V valine              5.5         12           2
 W tryptophan          4.1          9           1
 Y tyrosine            2.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100131693 
LOC100131693          1.000   PREDICTED: similar to hCG1777996 
LOC100131693          1.000   PREDICTED: similar to hCG1777996 
EIF4E                 0.984   eukaryotic translation initiation factor 4E isoform 1...
EIF4E                 0.959   eukaryotic translation initiation factor 4E isoform...
EIF4E                 0.947   eukaryotic translation initiation factor 4E isoform...
EIF4E1B               0.638   eukaryotic translation initiation factor 4E family ...
EIF4E2                0.239   eukaryotic translation initiation factor 4E member 2 ...
EIF4E3                0.133   eukaryotic translation initiation factor 4E family ...
EIF4E3                0.067   eukaryotic translation initiation factor 4E family ...
EIF4E3                0.067   eukaryotic translation initiation factor 4E family ...
EIF4E3                0.067   eukaryotic translation initiation factor 4E family m...
HOXD8                 0.009   homeobox D8 
CHD7                  0.009   chromodomain helicase DNA binding protein 7 
FNDC5                 0.007   fibronectin type III domain containing 5 
TTC18                 0.007   tetratricopeptide repeat domain 18 
HOXC8                 0.007   homeobox C8 
HOXB8                 0.007   homeobox B8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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