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Search of human proteins with 47087197
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47087197 HLA complex P5 [Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47087197 HLA complex P5 [Homo sapiens] 278 7e-76
gi|121949815 placenta-specific 4 [Homo sapiens] 32 0.19
gi|148839296 immunoglobulin-like and fibronectin type III domain... 31 0.32
gi|239747867 PREDICTED: hypothetical protein [Homo sapiens] 30 0.72
gi|253970427 immunoglobulin superfamily, member 22 [Homo sapiens] 29 0.94
gi|239746722 PREDICTED: hypothetical protein XP_002343802 [Homo ... 29 0.94
gi|32313593 olfactomedin 4 precursor [Homo sapiens] 29 1.2
gi|169161033 PREDICTED: hypothetical protein [Homo sapiens] 28 2.7
gi|239747244 PREDICTED: hypothetical protein [Homo sapiens] 28 2.7
gi|239741065 PREDICTED: hypothetical protein [Homo sapiens] 28 2.7
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 28 2.7
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 27 3.6
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 27 3.6
gi|31542711 ANT2-binding protein [Homo sapiens] 27 3.6
gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens] 27 3.6
gi|7657307 LIM domains containing 1 [Homo sapiens] 27 3.6
gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens] 27 4.7
gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens] 27 4.7
gi|118402582 cell division cycle 20 [Homo sapiens] 27 4.7
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 27 6.1
gi|149193327 mucin 20 isoform S [Homo sapiens] 27 6.1
gi|149193325 mucin 20 isoform L [Homo sapiens] 27 6.1
gi|223972690 adenosine deaminase domain containing 2 isoform 2 [... 27 6.1
gi|223972688 adenosine deaminase domain containing 2 isoform 1 [... 27 6.1
gi|21536371 telomerase-associated protein 1 [Homo sapiens] 26 8.0
gi|20336244 proprotein convertase subtilisin/kexin type 2 [Homo ... 26 8.0
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 26 8.0
gi|13027640 aminoadipate-semialdehyde synthase [Homo sapiens] 26 8.0
gi|150418009 transforming, acidic coiled-coil containing protein... 26 8.0
gi|53828670 olfactory receptor, family 2, subfamily Y, member 1 ... 26 8.0
>gi|47087197 HLA complex P5 [Homo sapiens]
Length = 132
Score = 278 bits (712), Expect = 7e-76
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MLLRMSEHRNEALGNYLEMRLKSSFLRGLGSWKSNPLRLGGWTILLTLTMGQGEPGGPQG 60
MLLRMSEHRNEALGNYLEMRLKSSFLRGLGSWKSNPLRLGGWTILLTLTMGQGEPGGPQG
Sbjct: 1 MLLRMSEHRNEALGNYLEMRLKSSFLRGLGSWKSNPLRLGGWTILLTLTMGQGEPGGPQG 60
Query: 61 DPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHILSNSPVAAVMCSSM 120
DPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHILSNSPVAAVMCSSM
Sbjct: 61 DPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHILSNSPVAAVMCSSM 120
Query: 121 GTHLSPFKGTLL 132
GTHLSPFKGTLL
Sbjct: 121 GTHLSPFKGTLL 132
>gi|121949815 placenta-specific 4 [Homo sapiens]
Length = 150
Score = 31.6 bits (70), Expect = 0.19
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 42 WTILLTLTMG-------QGEPGGPQGDPWVPHELLLPSLCDSSHASS 81
WT+ LTLT PG P PW P L+L +L H S
Sbjct: 102 WTLSLTLTPSILTLDSLTPHPGLPHSSPWTPSLLILDTLTQPGHPHS 148
>gi|148839296 immunoglobulin-like and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 868
Score = 30.8 bits (68), Expect = 0.32
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 51 GQGEPGGPQGDPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHILSNS 110
G GEPG P + + P L + + + SIT +W G D+ G+++
Sbjct: 442 GPGEPGPPSDAVFARDPMRPPGLVRNLQVTDRSNTSITLSWAGPDTQEGDEAQGYVVE-- 499
Query: 111 PVAAVMCSS 119
+CSS
Sbjct: 500 -----LCSS 503
>gi|239747867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 29.6 bits (65), Expect = 0.72
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 46 LTLTMGQGE--PGGPQG---DPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHP 100
LT+T E P G G PW LL S C S+ G+ + WRG + P
Sbjct: 210 LTITKESRELLPPGSAGCSLGPWAQSPQLLESCCSDLSKSADGTEAPRAGWRGSPGARGP 269
Query: 101 LV 102
L+
Sbjct: 270 LL 271
>gi|253970427 immunoglobulin superfamily, member 22 [Homo sapiens]
Length = 1326
Score = 29.3 bits (64), Expect = 0.94
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 51 GQGEPGGPQGDPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHIL 107
G G+P P + P L H S + SI+ AWR P SG+IL
Sbjct: 883 GPGQPSVPSSSVVAKDPVKPPGLVQDLHVSDSSNSSISLAWREPAEGDPP--SGYIL 937
>gi|239746722 PREDICTED: hypothetical protein XP_002343802 [Homo
sapiens]
Length = 140
Score = 29.3 bits (64), Expect = 0.94
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 55 PGGPQGDPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHILSNSPVAA 114
PG PQ H+ + AS WG G T W+ + HP + + +
Sbjct: 15 PGAPQPQSLHEHQW-------AEAASLWGEGQATWVWKARGTPGHPTLEE---ETEGLRS 64
Query: 115 VMCSS 119
++CSS
Sbjct: 65 LLCSS 69
>gi|32313593 olfactomedin 4 precursor [Homo sapiens]
Length = 510
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 41 GWTILLTLTMGQGEPGGPQGDPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHP 100
G + LL L G+ G GD P +PS SS S S + + R G SSS
Sbjct: 4 GLSFLLALLFFLGQAAGDLGDVGPP----IPSPGFSSFPGVDSSSSFSSSSRSGSSSSRS 59
Query: 101 LVSGHILS 108
L SG +S
Sbjct: 60 LGSGGSVS 67
>gi|169161033 PREDICTED: hypothetical protein [Homo sapiens]
Length = 723
Score = 27.7 bits (60), Expect = 2.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 51 GQGEPGGPQGDPWVPHELLLPSLCDSSHASSW--GSGSITCAWRGGDS 96
G+G G W P EL+LP S W G G I RGG++
Sbjct: 552 GRGWTSGSDCSCWRPCELILPRTNARSRLGYWLNGQGQILGRRRGGNA 599
>gi|239747244 PREDICTED: hypothetical protein [Homo sapiens]
Length = 719
Score = 27.7 bits (60), Expect = 2.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 51 GQGEPGGPQGDPWVPHELLLPSLCDSSHASSW--GSGSITCAWRGGDS 96
G+G G W P EL+LP S W G G I RGG++
Sbjct: 548 GRGWTSGSDCSCWRPCELILPRTNARSRLGYWLNGQGQILGRRRGGNA 595
>gi|239741065 PREDICTED: hypothetical protein [Homo sapiens]
Length = 494
Score = 27.7 bits (60), Expect = 2.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 51 GQGEPGGPQGDPWVPHELLLPSLCDSSHASSW--GSGSITCAWRGGDS 96
G+G G W P EL+LP S W G G I RGG++
Sbjct: 323 GRGWTSGSDCSCWRPCELILPRTNARSRLGYWLNGQGQILGRRRGGNA 370
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 27.7 bits (60), Expect = 2.7
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 28 GLGSWKSNPLRLGGWTILLTLTMGQGEPGGPQGDPWV 64
G G W + P GW LT QG PGGP P V
Sbjct: 19 GDGPWGAEP----GWVDPLTWLSFQGPPGGPGIGPGV 51
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 27.3 bits (59), Expect = 3.6
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 69 LLPSLCDSSHASSW------GSGSITCAWRGGDSSSHPLVSGHILSNSPVA 113
+L S HA W SGS + GG SSS P H +SP++
Sbjct: 1805 ILTSTTTVEHAPIWRPGTEQSSGSSGSSGGGGGSSSRPASHSHAHQHSPIS 1855
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 27.3 bits (59), Expect = 3.6
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 69 LLPSLCDSSHASSW------GSGSITCAWRGGDSSSHPLVSGHILSNSPVA 113
+L S HA W SGS + GG SSS P H +SP++
Sbjct: 1821 ILTSTTTVEHAPIWRPGTEQSSGSSGSSGGGGGSSSRPASHSHAHQHSPIS 1871
>gi|31542711 ANT2-binding protein [Homo sapiens]
Length = 371
Score = 27.3 bits (59), Expect = 3.6
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 11 EALGNYLEMRLKSSFLRGLGSWKSNPLRLGGWTILLTLTMGQGEPGGPQGDPWVPHELLL 70
E G E + FL+ +G + L + +L GQ + P+ P L
Sbjct: 34 EGCGGSKEHSFQHPFLQAVGMFLGEFSCLAAFYLLRCRAAGQSDSSVDPQQPFNPLLFLP 93
Query: 71 PSLCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHILSNSPVAAVMCSSMGTHLSPFKGT 130
P+LCD + G+ + A +SS ++ G ++ + + +V LS + G
Sbjct: 94 PALCDMT-----GTSLMYVALNMTSASSFQMLRGAVIIFTGLFSVAFLGRRLVLSQWLGI 148
Query: 131 L 131
L
Sbjct: 149 L 149
>gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens]
Length = 3487
Score = 27.3 bits (59), Expect = 3.6
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 54 EPGGPQGDPWVPHELLLPS----LCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHILSN 109
+PG P L L S LCD + GS +ITC + G + V +
Sbjct: 693 DPGVPVNGKRFGDSLQLGSSISFLCDEGFLGTQGSETITCVLKEGSVVWNSAV---LRCE 749
Query: 110 SPVAAVMCSSMGTHLSP 126
+P + S GT LSP
Sbjct: 750 APCGGHLTSPSGTILSP 766
>gi|7657307 LIM domains containing 1 [Homo sapiens]
Length = 676
Score = 27.3 bits (59), Expect = 3.6
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 48 LTMGQGEPGGPQGDPWVP-----HELLLPSLCDSSHASSWGSGSITCAWRGGDSSSHP 100
L++G G P P DP +P H L L SS SS GS + GG SS P
Sbjct: 202 LSVGSGWPSSPGSDPPLPKPCGDHPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKP 259
>gi|148839466 kalirin, RhoGEF kinase isoform 1 [Homo sapiens]
Length = 2986
Score = 26.9 bits (58), Expect = 4.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 58 PQGDPWVPHELLLPSLCDSSHASSWGSGSITCAW 91
P + WVP +L P ++ SS GS +C+W
Sbjct: 2370 PAAEGWVPGSILAPLTKATAAESSDGSIKKSCSW 2403
>gi|68362740 kalirin, RhoGEF kinase isoform 3 [Homo sapiens]
Length = 1289
Score = 26.9 bits (58), Expect = 4.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 58 PQGDPWVPHELLLPSLCDSSHASSWGSGSITCAW 91
P + WVP +L P ++ SS GS +C+W
Sbjct: 673 PAAEGWVPGSILAPLTKATAAESSDGSIKKSCSW 706
>gi|118402582 cell division cycle 20 [Homo sapiens]
Length = 499
Score = 26.9 bits (58), Expect = 4.7
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 32 WKSNPLRLGGWTILLTLTMGQGEPGGPQGDPWVPHELLLPSLCDSSHASSWGSGSITC 89
W S P GGW L T T QG PW + L H W S C
Sbjct: 336 WPSAPGE-GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 392
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 26.6 bits (57), Expect = 6.1
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 55 PGGPQGDPWVPHELLLPSLCDSSHASSWGSGSI 87
P P G P P P LCD S S +G GS+
Sbjct: 158 PLAPPGPPGPPRP---PGLCDDSPTSCFGVGSL 187
>gi|149193327 mucin 20 isoform S [Homo sapiens]
Length = 503
Score = 26.6 bits (57), Expect = 6.1
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 43 TILLTLTMGQGEPGGPQGDPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSS---- 98
T+ T T +G PH ++ PS S ASS G + R +SS+
Sbjct: 126 TLAHTSTEAKGLSSESSASSDSPHPVITPSRASESSASSDGPHPVITPSRASESSASSDG 185
Query: 99 -HPLVS 103
HP+++
Sbjct: 186 PHPVIT 191
>gi|149193325 mucin 20 isoform L [Homo sapiens]
Length = 538
Score = 26.6 bits (57), Expect = 6.1
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 43 TILLTLTMGQGEPGGPQGDPWVPHELLLPSLCDSSHASSWGSGSITCAWRGGDSSS---- 98
T+ T T +G PH ++ PS S ASS G + R +SS+
Sbjct: 161 TLAHTSTEAKGLSSESSASSDSPHPVITPSRASESSASSDGPHPVITPSRASESSASSDG 220
Query: 99 -HPLVS 103
HP+++
Sbjct: 221 PHPVIT 226
>gi|223972690 adenosine deaminase domain containing 2 isoform 2
[Homo sapiens]
Length = 583
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 2 LLRMSEHRNEALGNYLEMRLKSSFL---RGLGSWKSNPL 37
LL + + G Y E R + S L +GLG+W S PL
Sbjct: 539 LLALKTYEAAKAGPYQEARRQLSLLLDQQGLGAWPSKPL 577
>gi|223972688 adenosine deaminase domain containing 2 isoform 1
[Homo sapiens]
Length = 665
Score = 26.6 bits (57), Expect = 6.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 2 LLRMSEHRNEALGNYLEMRLKSSFL---RGLGSWKSNPL 37
LL + + G Y E R + S L +GLG+W S PL
Sbjct: 621 LLALKTYEAAKAGPYQEARRQLSLLLDQQGLGAWPSKPL 659
>gi|21536371 telomerase-associated protein 1 [Homo sapiens]
Length = 2627
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 94 GDSSSHPLVSGHILSNSPVA--AVMCSSM 120
GDS SHP + H+L +A +++CS++
Sbjct: 228 GDSESHPEPTDHVLQEKKMALLSLLCSTL 256
>gi|20336244 proprotein convertase subtilisin/kexin type 2 [Homo
sapiens]
Length = 638
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 65 PHELLLPSLCDSSHASSWGSGSITCAWRGGDSSSH 99
P EL L ++ D + G GSI W GD S+
Sbjct: 281 PRELTLQAMADGVNKGRGGKGSI-YVWASGDGGSY 314
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 26.2 bits (56), Expect = 8.0
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 41 GWTILLTLTMGQGE---PGGPQGDPWVPHELLLPSL----CDSSHASSWGSGSITCAWRG 93
G+ I T T GQ E PG P LL S CD + GS SITC +
Sbjct: 685 GFNITYT-TFGQNECHDPGIPINGRRFGDRFLLGSSVSFHCDDGFVKTQGSESITCILQD 743
Query: 94 GD---SSSHPL----VSGHILSNSPV 112
G+ SS+ P GH+ ++S V
Sbjct: 744 GNVVWSSTVPRCEAPCGGHLTASSGV 769
>gi|13027640 aminoadipate-semialdehyde synthase [Homo sapiens]
Length = 926
Score = 26.2 bits (56), Expect = 8.0
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 48 LTMGQGEPGGPQGDPWVPHELLLPSLCDSSHASSWGS 84
L G+ P G +G P +PH+L+ ++CD S A + GS
Sbjct: 329 LAPGKFSPAGVEGCPALPHKLV--AICDIS-ADTGGS 362
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 26.2 bits (56), Expect = 8.0
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 51 GQGEPGGPQGDPWVPHELLLP-SLCDSSHASSWGSGSITCAWRGGDSSSHPLVS 103
G G+PG Q P P E L L + H + G + T A R + HP+ S
Sbjct: 1137 GAGDPGKQQA-PEKPGEATLSCGLLQTEHCLTSGEEASTSALRESCQAEHPMAS 1189
>gi|53828670 olfactory receptor, family 2, subfamily Y, member 1
[Homo sapiens]
Length = 311
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 68 LLLPSLCDSSHASSWGSGSITCAWRGGDSSSHPLVSGHILSN 109
++ P LC + +SWG+G + + G + + PL GH L++
Sbjct: 135 IMHPHLCQTLAIASWGAGFVNSLIQTGLAMAMPL-CGHRLNH 175
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,184,956
Number of Sequences: 37866
Number of extensions: 319432
Number of successful extensions: 958
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 34
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.