Guide to the Human Genome
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Name: LOC645634 Sequence: fasta or formatted (494aa) NCBI GI: 239741065
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {723aa} PREDICTED: hypothetical protein
alt prot {719aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         36           2
 C cysteine            3.6         18           1
 D aspartate           4.5         22           1
 E glutamate           2.8         14           2
 F phenylalanine       5.5         27           3
 G glycine             9.7         48           3
 H histidine           4.7         23           2
 I isoleucine          4.5         22           3
 K lysine              2.6         13           1
 L leucine            12.1         60           2
 M methionine          2.2         11           1
 N asparagine          3.2         16           2
 P proline             7.5         37           1
 Q glutamine           6.3         31           3
 R arginine            3.4         17           3
 S serine              5.9         29           2
 T threonine           3.4         17           1
 V valine              5.9         29           2
 W tryptophan          2.6         13           1
 Y tyrosine            2.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645634             0.961   PREDICTED: hypothetical protein 
LOC645634             0.833   PREDICTED: hypothetical protein 
ANO7                  0.083   transmembrane protein 16G isoform NGEP long 
ANO4                  0.056   anoctamin 4 
ANO1                  0.053   anoctamin 1, calcium activated chloride channel [Ho...
ANO2                  0.052   anoctamin 2 
ANO3                  0.043   transmembrane protein 16C 
ANO5                  0.041   anoctamin 5 isoform b 
ANO5                  0.041   anoctamin 5 isoform a 
ANO6                  0.039   anoctamin 6 isoform c 
ANO6                  0.039   anoctamin 6 isoform c 
ANO6                  0.039   anoctamin 6 isoform b 
ANO6                  0.039   anoctamin 6 isoform a 
ANO9                  0.036   tumor protein p53 inducible protein 5 
ANO8                  0.017   anoctamin 8 
ANO10                 0.013   transmembrane protein 16K 
PUF60                 0.007   poly-U binding splicing factor 60KDa isoform b [Homo...
PUF60                 0.007   poly-U binding splicing factor 60KDa isoform a [Homo...
RING1                 0.005   ring finger protein 1 
ACIN1                 0.005   apoptotic chromatin condensation inducer 1 
AHRR                  0.005   arylhydrocarbon receptor repressor 
LRP10                 0.005   low density lipoprotein receptor-related protein 10 ...
LOC100293922          0.005   PREDICTED: hypothetical protein 
LOC100291878          0.005   PREDICTED: similar to RIKEN cDNA C230030N03 
LOC100291358          0.005   PREDICTED: hypothetical protein XP_002347390 
HOXC8                 0.005   homeobox C8 
ARMC5                 0.004   armadillo repeat containing 5 isoform b 
ARMC5                 0.004   armadillo repeat containing 5 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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