Guide to the Human Genome
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Name: LOC645634 Sequence: fasta or formatted (719aa) NCBI GI: 239747244
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {723aa} PREDICTED: hypothetical protein
alt prot {494aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         57           3
 C cysteine            3.5         25           1
 D aspartate           3.6         26           1
 E glutamate           3.6         26           2
 F phenylalanine       4.7         34           3
 G glycine             9.3         67           3
 H histidine           3.8         27           2
 I isoleucine          4.0         29           3
 K lysine              2.5         18           3
 L leucine            11.4         82           2
 M methionine          1.9         14           1
 N asparagine          2.5         18           2
 P proline             7.6         55           2
 Q glutamine           5.3         38           2
 R arginine            6.8         49           3
 S serine              7.0         50           4
 T threonine           5.3         38           2
 V valine              5.0         36           2
 W tryptophan          2.5         18           1
 Y tyrosine            1.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645634             0.832   PREDICTED: hypothetical protein 
LOC645634             0.665   PREDICTED: hypothetical protein 
ANO7                  0.103   transmembrane protein 16G isoform NGEP long 
ANO4                  0.051   anoctamin 4 
ANO2                  0.045   anoctamin 2 
ANO3                  0.042   transmembrane protein 16C 
ANO1                  0.036   anoctamin 1, calcium activated chloride channel [Ho...
ANO6                  0.030   anoctamin 6 isoform c 
ANO6                  0.030   anoctamin 6 isoform c 
ANO6                  0.030   anoctamin 6 isoform b 
ANO6                  0.030   anoctamin 6 isoform a 
ANO5                  0.028   anoctamin 5 isoform b 
ANO5                  0.028   anoctamin 5 isoform a 
ANO9                  0.026   tumor protein p53 inducible protein 5 
ANO8                  0.011   anoctamin 8 
ANO10                 0.009   transmembrane protein 16K 
SRRM2                 0.008   splicing coactivator subunit SRm300 
LOC100130882          0.007   PREDICTED: hypothetical protein 
LOC100130882          0.007   PREDICTED: hypothetical protein 
LOC100130882          0.007   PREDICTED: hypothetical protein 
FLJ37078              0.007   hypothetical protein LOC222183 
LRP10                 0.006   low density lipoprotein receptor-related protein 10 ...
LOC100292370          0.005   PREDICTED: hypothetical protein 
LOC100291912          0.005   PREDICTED: hypothetical protein XP_002344618 
LOC100290635          0.005   PREDICTED: hypothetical protein XP_002347290 
LOC100287251          0.005   PREDICTED: hypothetical protein XP_002343154 
PUF60                 0.005   poly-U binding splicing factor 60KDa isoform b [Homo...
PUF60                 0.005   poly-U binding splicing factor 60KDa isoform a [Homo...
TAS2R10               0.005   taste receptor, type 2, member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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