Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 46275820
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
(239 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 481 e-136
gi|150456465 tetratricopeptide repeat domain 9 [Homo sapiens] 225 2e-59
gi|28603842 tetratricopeptide repeat domain 9C [Homo sapiens] 159 2e-39
gi|52630440 FK506-binding protein 8 [Homo sapiens] 45 6e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 44 9e-05
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 44 2e-04
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|45827729 scribble isoform b [Homo sapiens] 42 5e-04
gi|60460889 Myb protein P42POP [Homo sapiens] 42 6e-04
gi|157649073 adenylyl cyclase-associated protein [Homo sapiens] 41 0.001
gi|5453595 adenylyl cyclase-associated protein [Homo sapiens] 41 0.001
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 41 0.001
gi|7706469 Kruppel-like factor [Homo sapiens] 40 0.001
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 40 0.001
gi|7706687 Enah/Vasp-like [Homo sapiens] 40 0.002
gi|201860300 aryl hydrocarbon receptor interacting protein [Homo... 39 0.003
gi|45827731 scribble isoform a [Homo sapiens] 39 0.003
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 39 0.003
gi|4826932 peptidylprolyl isomerase D [Homo sapiens] 39 0.004
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 39 0.004
gi|39930571 leucine rich repeat containing 56 [Homo sapiens] 39 0.005
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 39 0.005
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 39 0.005
gi|19924103 synapsin II isoform IIa [Homo sapiens] 39 0.005
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 39 0.005
gi|19924101 synapsin II isoform IIb [Homo sapiens] 39 0.005
gi|47132519 Ras association and pleckstrin homology domains 1 is... 39 0.005
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 39 0.005
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 39 0.005
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 481 bits (1237), Expect = e-136
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MQRGALSPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDS 60
MQRGALSPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDS
Sbjct: 1 MQRGALSPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDS 60
Query: 61 SLRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPA 120
SLRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPA
Sbjct: 61 SLRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPA 120
Query: 121 RLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIA 180
RLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIA
Sbjct: 121 RLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIA 180
Query: 181 FYHLGDYARALRYLQEARSREPTDTNVLRYIQLTQLKMNRCSLQREDSGAGSQTRDVIG 239
FYHLGDYARALRYLQEARSREPTDTNVLRYIQLTQLKMNRCSLQREDSGAGSQTRDVIG
Sbjct: 181 FYHLGDYARALRYLQEARSREPTDTNVLRYIQLTQLKMNRCSLQREDSGAGSQTRDVIG 239
>gi|150456465 tetratricopeptide repeat domain 9 [Homo sapiens]
Length = 222
Score = 225 bits (574), Expect = 2e-59
Identities = 122/221 (55%), Positives = 155/221 (70%), Gaps = 26/221 (11%)
Query: 16 PEPPP-----RPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSS--LRAAVAF 68
P PP RPPP L PG G G+ +R G +GAA + + +R A F
Sbjct: 14 PSPPAAGEGQRPPPPLCVPGGGGGAPAR-------------GQVGAAAEPAELIRRAHEF 60
Query: 69 KAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPG---PARLSEE 125
K++G +CY++KKFREAIGKYHRALL+LK P G P S G P RLSEE
Sbjct: 61 KSQGAQCYKDKKFREAIGKYHRALLELKGL--LPPPGERERDSRPASPAGALKPGRLSEE 118
Query: 126 QRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIAFYHLG 185
Q + VE+ E++CY+SL ACLLQ+ELVNYERV+EYCLKVL+K+ NFKA YR+G+AFYHLG
Sbjct: 119 QSKTVEAIEIDCYNSLAACLLQAELVNYERVKEYCLKVLKKEGENFKALYRSGVAFYHLG 178
Query: 186 DYARALRYLQEARSREPTDTNVLRYIQLTQLKMNRCSLQRE 226
DY +AL YL+EAR+++PTDTNV+RYIQLT++K++RCS QRE
Sbjct: 179 DYDKALYYLKEARTQQPTDTNVIRYIQLTEMKLSRCS-QRE 218
>gi|28603842 tetratricopeptide repeat domain 9C [Homo sapiens]
Length = 171
Score = 159 bits (402), Expect = 2e-39
Identities = 82/162 (50%), Positives = 111/162 (68%), Gaps = 6/162 (3%)
Query: 58 LDSSLRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSP 117
++ L+ A +K EG + YRE K+R+A+ +YHRALLQL+ + PS LP P
Sbjct: 1 MEKRLQEAQLYKEEGNQRYREGKYRDAVSRYHRALLQLRGLDPSLPSPLPNLGP-----Q 55
Query: 118 GPARLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRA 177
GPA L+ EQ ++ +T+ +CY++L ACLLQ E VNYERVREY KVLE+Q N KA YRA
Sbjct: 56 GPA-LTPEQENILHTTQTDCYNNLAACLLQMEPVNYERVREYSQKVLERQPDNAKALYRA 114
Query: 178 GIAFYHLGDYARALRYLQEARSREPTDTNVLRYIQLTQLKMN 219
G+AF+HL DY +A YL A +R+P D NV RY+QLTQ +++
Sbjct: 115 GVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQSELS 156
>gi|52630440 FK506-binding protein 8 [Homo sapiens]
Length = 413
Score = 45.1 bits (105), Expect = 6e-05
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 114 TSSPGPARLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKA 173
TSS EE+ +L++ +V+C ++L A Q +L +Y C VLE Q N KA
Sbjct: 253 TSSAKVDMTFEEEAQLLQ-LKVKCLNNLAAS--QLKLDHYRAALRSCSLVLEHQPDNIKA 309
Query: 174 TYRAGIAFYHLGDYARALRYLQEARSREPTDTNV 207
+R G G+Y+ A+ L+ A EP++ +
Sbjct: 310 LFRKGKVLAQQGEYSEAIPILRAALKLEPSNKTI 343
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 44.3 bits (103), Expect = 9e-05
Identities = 44/144 (30%), Positives = 54/144 (37%), Gaps = 33/144 (22%)
Query: 5 ALSPVLMLSAAPEPPP------RPP----------PALSPPGSGPGSGSRHGSARPGPTP 48
A +P +A P PPP RPP PA+ PP + GS A P P P
Sbjct: 260 APAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGS--AGAAPAPAP 317
Query: 49 EPSGSLGAALDSSLRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAA---------- 98
G G + AA A A G + K+ +A + L A
Sbjct: 318 AAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGP 377
Query: 99 --QGARPS--GLPAPAPG-PTSSP 117
QGA PS +P PAPG PT P
Sbjct: 378 TMQGALPSPAAVPPPAPGTPTGLP 401
Score = 42.0 bits (97), Expect = 5e-04
Identities = 39/125 (31%), Positives = 41/125 (32%), Gaps = 20/125 (16%)
Query: 8 PVLMLSAAPEPPPRPPPA--LSPPGSGPGSGSRHGSARP----GPTPE-------PSGSL 54
P AP P PPPA P G GP RP GP P P GS
Sbjct: 75 PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSA 134
Query: 55 GAALDSSLRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPT 114
G+ AAVA E K A L +A G P P P PGP
Sbjct: 135 GSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA-------LAARAGPGPGPGPGPGPGPGPG 187
Query: 115 SSPGP 119
GP
Sbjct: 188 KPAGP 192
Score = 32.0 bits (71), Expect = 0.49
Identities = 45/137 (32%), Positives = 58/137 (42%), Gaps = 27/137 (19%)
Query: 4 GALSPV---LMLSAAPEPPP----RP--PPALSP-------PGSGPGSGSRHGS-ARPGP 46
G+ +PV ++A PEP P +P P AL+ PG GPG G G A PG
Sbjct: 135 GSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGA 194
Query: 47 TPEPSGSLGAALDSSLRA---AVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARP 103
+GS AAL +S A AV+ G A G ++Q GA
Sbjct: 195 AQTLNGS--AALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPG----TVIQTPPFVGAAA 248
Query: 104 SGLPAPAPGPTSSPGPA 120
PA AP P ++P PA
Sbjct: 249 PPAPA-APSPPAAPAPA 264
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 43.5 bits (101), Expect = 2e-04
Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 8 PVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVA 67
P +L P PP PPP PPG P G PT +G+ A LD A
Sbjct: 362 PPSVLGVGPVAPPPPPPPPPPPGPPPPPGLPSDGDHQVPT--TAGNKAALLDQIREGAQL 419
Query: 68 FKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAP 111
K E R+A+ R +QLK+ + S P PAP
Sbjct: 420 KKVEQNSRPVSCSGRDALLDQIRQGIQLKSVADGQESTPPTPAP 463
Score = 33.1 bits (74), Expect = 0.22
Identities = 34/125 (27%), Positives = 40/125 (32%), Gaps = 25/125 (20%)
Query: 5 ALSPVLMLSAAPEPPPR----PPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDS 60
A+ L A P PPP PPP P SGP G P P P + +
Sbjct: 267 AVKNELRRQAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPP 326
Query: 61 SLRAAVAF-KAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAP-----GPT 114
R +VA R Y A + PSG P P P GP
Sbjct: 327 PSRPSVAVPPPPPNRMYPPPP---------------PALPSSAPSGPPPPPPSVLGVGPV 371
Query: 115 SSPGP 119
+ P P
Sbjct: 372 APPPP 376
Score = 30.0 bits (66), Expect = 1.8
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 1 MQRGALSPVLMLSAAPEPPPRPPPALSPP-------GSGPGSGSRHGSARPGPTP 48
++R A P P PPP PP PP G+ P SR +A P P P
Sbjct: 272 LRRQAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPP 326
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 42.0 bits (97), Expect = 5e-04
Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 7 SPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAV 66
SP+ +SA P PP PP PPG S RPG P G LG S RA
Sbjct: 59 SPLYRVSAPPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSP-GPLGRRASCSGRAGS 113
Query: 67 AFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPA 120
A G+ + L AAQ P+ P T SPGPA
Sbjct: 114 A------------------GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPA 149
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 42.0 bits (97), Expect = 5e-04
Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 7 SPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAV 66
SP+ +SA P PP PP PPG S RPG P G LG S RA
Sbjct: 59 SPLYRVSAPPPAPPPPP----PPGGPSRSERPRAGLRPGAFVSP-GPLGRRASCSGRAGS 113
Query: 67 AFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPA 120
A G+ + L AAQ P+ P T SPGPA
Sbjct: 114 A------------------GRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPA 149
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 42.0 bits (97), Expect = 5e-04
Identities = 40/142 (28%), Positives = 53/142 (37%), Gaps = 21/142 (14%)
Query: 14 AAPEPPPRPPPALSPPGSGPG------SGSRHGSARPGPTPEPSGSLGAALDSSLRAAVA 67
A+P P R PA PP G + RH +PEP A + LRA A
Sbjct: 1436 ASPSPTSRQSPASPPPLGGGAPVRTAKAERRHQERLRVQSPEPPAPERALSPAELRALEA 1495
Query: 68 FKAEGQRCYREKKFREAIGKYHRALLQLKAAQGAR---------PSGLPAPAP------G 112
K R R K + + L + + +G R PS P P+P G
Sbjct: 1496 EKRALWRAARMKSLEQDALRAQMVLSRSQEGRGTRGPLERLAEAPSPAPTPSPTPVEDLG 1555
Query: 113 PTSSPGPARLSEEQRRLVESTE 134
P +S P RLS + + S E
Sbjct: 1556 PQTSTSPGRLSPDFAEELRSLE 1577
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 3 RGALSPVLMLSAAPEPPPRPPP----------ALSPPGSGPGSGSRHGSARPGPTPEP 50
RG P+ L+ AP P P P P + SP P S P P+P P
Sbjct: 1527 RGTRGPLERLAEAPSPAPTPSPTPVEDLGPQTSTSPGRLSPDFAEELRSLEPSPSPGP 1584
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 41.6 bits (96), Expect = 6e-04
Identities = 40/120 (33%), Positives = 47/120 (39%), Gaps = 8/120 (6%)
Query: 5 ALSPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRA 64
AL PV + A PPP PP PP P + P P P P +L A+ D SL
Sbjct: 207 ALQPVQLPRLALSPPPPAPPLPPPP---PLAQVAPSPPSPPPPPRPPPTLSAS-DPSLDF 262
Query: 65 AVAFKAEGQRCYRE--KKFREAIGKYHRAL-LQLKAAQGARPSGLPAPAPGPTSSPGPAR 121
A + E RE R+ + K AL L G LP P P P P P R
Sbjct: 263 LRA-QQETANAIRELAGTLRQGLAKLSEALSALLPLLPGTPVDSLPPPLPPPPPPPPPPR 321
Score = 30.4 bits (67), Expect = 1.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 12 LSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAA 65
L P PPP P P L PP + + TPEP + A +D ++ AA
Sbjct: 310 LPPPPPPPPPPRPVLPPP-----------APKVEITPEPVSVVAAVVDGAVVAA 352
Score = 28.1 bits (61), Expect = 7.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 9 VLMLSAAPEPPPRPPPALSPPGSGPGSGSRHG 40
V++ + E PRPPPA PP P R G
Sbjct: 355 VIIAPRSEEGAPRPPPAPLPPHDSPPHKRRKG 386
>gi|157649073 adenylyl cyclase-associated protein [Homo sapiens]
Length = 475
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 26 LSPPGSGPGSGSRHGSARPGPTPEP-SGSLGAALDSSLRAAVAFKAEGQRCYREKKFREA 84
LS SGP +GS PGP P P S S G+ +S A A +G+ K
Sbjct: 217 LSGLPSGPSAGSGPPPPPPGPPPPPVSTSSGSDESASRSALFAQINQGESITHALKHVSD 276
Query: 85 IGKYHRALLQLKAAQGARPSG-LPAPAPGPTSSPGPARLSEEQRRLVE 131
K H+ LKA G SG P AP P +SP P R ++++ ++E
Sbjct: 277 DMKTHKN-PALKAQSGPVRSGPKPFSAPKPQTSPSPKRATKKEPAVLE 323
>gi|5453595 adenylyl cyclase-associated protein [Homo sapiens]
Length = 475
Score = 40.8 bits (94), Expect = 0.001
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 26 LSPPGSGPGSGSRHGSARPGPTPEP-SGSLGAALDSSLRAAVAFKAEGQRCYREKKFREA 84
LS SGP +GS PGP P P S S G+ +S A A +G+ K
Sbjct: 217 LSGLPSGPSAGSGPPPPPPGPPPPPVSTSSGSDESASRSALFAQINQGESITHALKHVSD 276
Query: 85 IGKYHRALLQLKAAQGARPSG-LPAPAPGPTSSPGPARLSEEQRRLVE 131
K H+ LKA G SG P AP P +SP P R ++++ ++E
Sbjct: 277 DMKTHKN-PALKAQSGPVRSGPKPFSAPKPQTSPSPKRATKKEPAVLE 323
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 32 GPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVAFKAEGQRCYREKKFREAIGKYHRA 91
GPG + G+ +PGPTP P + GA S R++ + A + EK R G +
Sbjct: 883 GPGGSPQEGTRQPGPTPSPGPNSGA----SRRSSASQGAGSRGLSEEKTLRSGGGPQGQ- 937
Query: 92 LLQLKAAQGARPSGLPAPAP 111
+ A G PS LP +P
Sbjct: 938 ----EEASGVSPSSLPRSSP 953
Score = 31.2 bits (69), Expect = 0.83
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 25/119 (21%)
Query: 7 SPVLMLSAAPEPP---PRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLR 63
SP+++ PE P S PG+ P A+ GP+PE S G + R
Sbjct: 804 SPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQ-----EAQRGPSPEASWLCGRYCPTPPR 858
Query: 64 AAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPA---PGPTSSPGP 119
+ C + G H++ A+G P G P PGPT SPGP
Sbjct: 859 GRPCPQRRSSSC-------GSTGSSHQS-----TARG--PGGSPQEGTRQPGPTPSPGP 903
Score = 28.5 bits (62), Expect = 5.4
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 14 AAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALD 59
+ P P RP P+ P G PG RH P TP SG L A D
Sbjct: 270 STPRLPERPGPSNPPVGPAPG---RH----PQDTPAQSGPLVAGDD 308
Score = 28.5 bits (62), Expect = 5.4
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 13 SAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRA 64
S A P P PG P G G++R + +GS G + + +LR+
Sbjct: 879 STARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSASQGAGSRGLSEEKTLRS 930
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 40.4 bits (93), Expect = 0.001
Identities = 40/133 (30%), Positives = 46/133 (34%), Gaps = 32/133 (24%)
Query: 14 AAPEPPPRPP--------PALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAA 65
AAPEPPP PP P PP S P G RP L A L +L
Sbjct: 60 AAPEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSELLRP--------ELDAPLGPALHGR 111
Query: 66 VAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPA------PG------- 112
G+ E + G Y A + +G + G P PA PG
Sbjct: 112 FLLAPPGRLVKAEPPEADGGGGYGCAPGLTRGPRGLKREGAPGPAASCMRGPGGRPPPPP 171
Query: 113 ---PTSSPGPARL 122
P S GPARL
Sbjct: 172 DTPPLSPDGPARL 184
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 40.4 bits (93), Expect = 0.001
Identities = 37/125 (29%), Positives = 41/125 (32%), Gaps = 15/125 (12%)
Query: 16 PEPPPRPPPAL----SPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVAFKAE 71
P PPP PA SPP P + P P PS DS AV K
Sbjct: 1057 PNPPPESAPAQCKVPSPPTQHPEASPPFSIPSPSPPMSPSQEHKETRDSEDSQAVIAKVS 1116
Query: 72 GQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSP--------GPARLS 123
G F A A L A P LP A GP +P GP +
Sbjct: 1117 GN---THSIFCPATSSLFEAKPPLSTAHPLTPPSLPPEAGGPLGNPAECWKNSSGPWLRA 1173
Query: 124 EEQRR 128
+ QRR
Sbjct: 1174 DSQRR 1178
>gi|7706687 Enah/Vasp-like [Homo sapiens]
Length = 418
Score = 40.0 bits (92), Expect = 0.002
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 23/115 (20%)
Query: 18 PPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPS-GSLGAALDSSLRAAVAFKAEGQRCY 76
PPP PPP + PP + G+ P P P P+ G+ G++ D S + +A G +
Sbjct: 184 PPPPPPPPVPPPPT--------GATPPPPPPLPAGGAQGSSHDESSMSGLAAAIAGAKLR 235
Query: 77 REKKFREAIGKYHRALLQLKAAQGARPSGL-PAPAPGPTSSPGPARLSEEQRRLV 130
R ++ +A G G+ PSG + A +S G L EE +L+
Sbjct: 236 RVQRPEDASG-------------GSSPSGTSKSDANRASSGGGGGGLMEEMNKLL 277
>gi|201860300 aryl hydrocarbon receptor interacting protein [Homo
sapiens]
Length = 330
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 20/122 (16%)
Query: 59 DSSLRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPG 118
+ +A EG R YRE +EA KY+ A+ LK Q G SP
Sbjct: 173 EEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPG----------SPE 222
Query: 119 PARLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAG 178
+L ++ L+ L C + + Y V ++C +L K N KA ++ G
Sbjct: 223 WIQLDQQITPLL----------LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRG 272
Query: 179 IA 180
A
Sbjct: 273 KA 274
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 39.3 bits (90), Expect = 0.003
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 14 AAPEPPPRPPPALSPPGSGPG------SGSRHGSARPGPTPEPSGSLGAALDSSLRAAVA 67
A+P P R PA PP G + RH +PEP A + LR A
Sbjct: 1436 ASPSPTSRQSPASPPPLGGGAPVRTAKAERRHQERLRVQSPEPPAPERALSPAELR---A 1492
Query: 68 FKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLP------APAPGPTSSPGP 119
+AE + +R + + RA + L +Q R + P AP+P PT SP P
Sbjct: 1493 LEAEKRALWRAARMKSLEQDALRAQMVLSRSQEGRGTRGPLERLAEAPSPAPTPSPTP 1550
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 39.3 bits (90), Expect = 0.003
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 10 LMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVAFK 69
L S A E P+ S P S S H A P P+P P +L S + K
Sbjct: 451 LSASTASELSPKSKARPSSP-----STSWHRPASPCPSPGPGHTLPPKPPSPRGTTASPK 505
Query: 70 AEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPARLSEEQ 126
+R K+ A G ++ + +A+ + +PAP P SP PA +EQ
Sbjct: 506 GRVRRKEEAKESPSAAGPEDKSQSKRRASNEKESAAPASPAPSPAPSPTPAPPQKEQ 562
Score = 37.4 bits (85), Expect = 0.012
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 13 SAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVAFKAEG 72
S AP P P PP PP P + S P P P + S A + A AE
Sbjct: 548 SPAPSPTPAPPQKEQPPAETPTDAAVLTSP-PAPAPPVTPSKPMAGTTDREEATRLLAEK 606
Query: 73 QRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPARLSEEQ 126
+R RE++ RE LQ + + R L A AR EEQ
Sbjct: 607 RRQAREQREREE----QERRLQAERDKRMREEQLAREAEARAEREAEARRREEQ 656
>gi|4826932 peptidylprolyl isomerase D [Homo sapiens]
Length = 370
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 120 ARLSEEQRRLVESTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGI 179
A + R ++ + C ++ AC L+ + N++ + CL+ LE N KA YR
Sbjct: 258 AVIETADRAKLQPIALSCVLNIGACKLK--MSNWQGAIDSCLEALELDPSNTKALYRRAQ 315
Query: 180 AFYHLGDYARALRYLQEARSREPTDTNVLRYIQLTQLKMNR 220
+ L +Y +AL L++A+ P D + IQ LK+ +
Sbjct: 316 GWQGLKEYDQALADLKKAQGIAPED----KAIQAELLKVKQ 352
Score = 29.3 bits (64), Expect = 3.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 57 ALDSSLRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARP 103
A+DS L A + + YR + + + +Y +AL LK AQG P
Sbjct: 292 AIDSCLEALELDPSNTKALYRRAQGWQGLKEYDQALADLKKAQGIAP 338
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 38.9 bits (89), Expect = 0.004
Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 17 EPPPRPPPALSPPGSGPGS---GSRHGSARPG----PTPEPSGSLGAALDSSLRAAVAFK 69
E PPRPPP PP GP H + RPG P P G GA D L + +
Sbjct: 443 ERPPRPPPPPPPPRDGPFPWPWPPAHSAPRPGTLSSPFPLLDGFPGADPDDVLTVTESSR 502
Query: 70 AEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPA-PGPTSSP 117
C EK R A G P+ PA A P P ++P
Sbjct: 503 GLNLECLWEKARRGA------------GRGGGAPAWQPASAPPAPHANP 539
Score = 35.8 bits (81), Expect = 0.034
Identities = 35/120 (29%), Positives = 42/120 (35%), Gaps = 18/120 (15%)
Query: 10 LMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAAL--------DSS 61
LM +AAP+ P R PP PP P +A P P P S G+ L DS
Sbjct: 765 LMGAAAPQYPGRGPPPAPPPPPPPPRAPADPAASPDP-PSAVASPGSGLSSPGPKPGDSG 823
Query: 62 LRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPA--PGPTSSPGP 119
F EG F + + +A G P P PGP PGP
Sbjct: 824 YETETPFSPEG-------AFPGGGAAEEEGVPRPRAPPEPPDPGAPRPPPDPGPLPLPGP 876
Score = 32.7 bits (73), Expect = 0.29
Identities = 35/112 (31%), Positives = 40/112 (35%), Gaps = 12/112 (10%)
Query: 18 PPPRPPPALSPPGSGPGSGSRHGSARPGPTPE--PSGSLGAALDSSLRAAVAFKAEGQRC 75
P P PPP PP + P R A P PE P G GA DS A +G
Sbjct: 1172 PQPPPPPLPPPPEAQP---RRLEPAPPRARPEVAPEGEPGAP-DSRAGGDTALSGDGDPP 1227
Query: 76 YREKKFREA------IGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPAR 121
E+K E +G Q+KA LP P PGP R
Sbjct: 1228 KPERKGPEMPRLFLDLGPPQGNSEQIKARLSRLSLALPPLTLTPFPGPGPRR 1279
Score = 30.4 bits (67), Expect = 1.4
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 8 PVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVA 67
P L L+ P P PR PP +G G G+ PGP E + AA
Sbjct: 1265 PPLTLTPFPGPGPRRPP-WEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEEEDEEAAAP 1323
Query: 68 FKAEGQR 74
A G R
Sbjct: 1324 GAAAGPR 1330
>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
Length = 542
Score = 38.5 bits (88), Expect = 0.005
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 14 AAPEPPPRPPPALSPPGSGPGSGSRHGSARPG--PTPEPSGSLGAALDSSLRAAVAFKAE 71
A P+ P PP S P G+ S+H P P P SGS SS R + ++
Sbjct: 425 AEPKTPSSPPSLASEPS---GTSSQHLVPSPPKHPRPRDSGS------SSPRWSTDLQSR 475
Query: 72 GQRCYREKKFREAIGKYHRALLQLKAAQGA-----RPSGLPAPAPGPTSSPGPARLSE 124
G+R + +G A+ L+A + A R G P P P P ++ P R +E
Sbjct: 476 GRRLRVLGSWGPGLGDGVAAVPVLRALEVASRLSPRAQGCPGPKPAPDAAARPPRAAE 533
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 38.5 bits (88), Expect = 0.005
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 12 LSAAPEPPPRPPPALSP--PGSGPGSGSRHGSARPGPTPEPSGSLGAAL-----DSSLRA 64
+S+A EPPP PPP +P P + SG + S + GP + ++ +A+ D+ +
Sbjct: 1 MSSAAEPPPPPPPESAPSKPAASIASGGSNSSNKGGPEGVAAQAVASAVSAGPADAEMEE 60
Query: 65 AVAFKAEGQR--------CYREKKFREAIGKYHRALLQLKA-AQGARPSGLPAPAPGPTS 115
+ G++ Y EK + ++ L Q + A +P+ P
Sbjct: 61 IFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKM 120
Query: 116 SPGPARLSEEQRR 128
PG R+ +++++
Sbjct: 121 KPGRPRIKKDEKQ 133
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 38.5 bits (88), Expect = 0.005
Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 29/108 (26%)
Query: 13 SAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVAFKAEG 72
+A E +PPPAL PP P ++P P P P S +SL ++A EG
Sbjct: 762 TATQEEEKKPPPALPPP---PPLAKFPPPSQPQPPPPPPPS-----PASLLKSLASVLEG 813
Query: 73 QR-CYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGP 119
Q+ CYR GA S P P P SPGP
Sbjct: 814 QKYCYR--------------------GTGAAVSTRPGPLPTTQYSPGP 841
Score = 32.0 bits (71), Expect = 0.49
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 3 RGALSPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSL 62
R A P SA+ PP P P GS G S+ A PTP P +L +
Sbjct: 38 RSAWLPGGRCSASIGQPPLPAPLPPSHGSSSGHPSKPYYAPGAPTPRPLHGKLESLHGCV 97
Query: 63 RAAVAFKAE-------GQRCYREKKFREAIGKYHRAL 92
+A + A+ GQ E EA YH AL
Sbjct: 98 QALLREPAQPGLWEQLGQLYESEHDSEEATRCYHSAL 134
Score = 29.3 bits (64), Expect = 3.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 2 QRGALSPVLMLSAAPEPPPRPPPALSPP 29
++ L P L L P PPP PPP PP
Sbjct: 236 EQTGLPPGLPLPPPPLPPPPPPPPPPPP 263
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 38.5 bits (88), Expect = 0.005
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 16 PEPPPRPPP-----ALSPPGSGPGSGSRHGSA-RPGPTPEPSGSLGAALDSSLRAAV 66
P PPP P P + +PP + PG R A P P P P+ S+G++ SSL AV
Sbjct: 34 PPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPSVGSSFFSSLSQAV 90
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 38.5 bits (88), Expect = 0.005
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 14 AAPEPPPRPPPALSPPGSGPGSGS--RHGSARPGPTPEPSGSLG-AALDSSLRAAVAFKA 70
A P PPP PP L PP + GSGS R S P P+ P G L
Sbjct: 221 AQPPPPPGPPQQLPPPPAPAGSGSSPRADSKPPLPSKLPRPKAGPRQLQLHYCDICKISC 280
Query: 71 EGQRCYREKKFREAIGKYHRALLQLKAAQ--GARPSGLP 107
G + YRE G+ HR + +AAQ G +P+G P
Sbjct: 281 AGPQTYRE----HLGGQKHR---KKEAAQKTGVQPNGSP 312
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 38.5 bits (88), Expect = 0.005
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 16 PEPPPRPPP-----ALSPPGSGPGSGSRHGSA-RPGPTPEPSGSLGAALDSSLRAAV 66
P PPP P P + +PP + PG R A P P P P+ S+G++ SSL AV
Sbjct: 34 PPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPSVGSSFFSSLSQAV 90
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 38.5 bits (88), Expect = 0.005
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 13 SAAPEPPPRPPPALSP-------PGSGPGSGSRHGSARPGPTPEPSGSL 54
S P PPP PPP SP PG S G +P PTP+ + S+
Sbjct: 933 SPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQRNSSI 981
Score = 32.3 bits (72), Expect = 0.37
Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 14/114 (12%)
Query: 7 SPVLMLSAAPEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAV 66
SP L P PPP PPP PP S GSA P ++ ++S +
Sbjct: 625 SPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSA--APMFVKYSTITRLQNASQHSGA 682
Query: 67 AFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPSGLPAPAPGPTSSPGPA 120
FK + + + I L G P P P P P +PG A
Sbjct: 683 LFKPPTPPVMQSQSVKPQI---------LVPPNGVVP---PPPPPPPPPTPGSA 724
Score = 31.6 bits (70), Expect = 0.64
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 20/116 (17%)
Query: 16 PEPPPRPPPALSPPGSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVAFKAEGQRC 75
P PPP P PA PP S PTP+ SGS G +S ++ K
Sbjct: 928 PPPPPSPVPAPPPPPPPTAS----------PTPDKSGSPGK--KTSKTSSPGGKKPPPTP 975
Query: 76 YREKKFREAIGKYH----RALLQLKAAQGARPSGLPAPA----PGPTSSPGPARLS 123
R + + G H R + ++ P+ +P+ P P + P P +L+
Sbjct: 976 QRNSSIKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKETLPPPAAPPKPGKLN 1031
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 38.5 bits (88), Expect = 0.005
Identities = 26/56 (46%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 18 PPPRPPPALSPP-GSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVAFKAEG 72
PPP P ALS P G PGSG+ +A G P PS S A+ SS A F A G
Sbjct: 223 PPPAPAYALSSPRGGTPGSGA---AAAAGSKPPPSSSASASSSSSSFAQQRFGAMG 275
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 38.5 bits (88), Expect = 0.005
Identities = 26/56 (46%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 18 PPPRPPPALSPP-GSGPGSGSRHGSARPGPTPEPSGSLGAALDSSLRAAVAFKAEG 72
PPP P ALS P G PGSG+ +A G P PS S A+ SS A F A G
Sbjct: 223 PPPAPAYALSSPRGGTPGSGA---AAAAGSKPPPSSSASASSSSSSFAQQRFGAMG 275
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,428,853
Number of Sequences: 37866
Number of extensions: 812612
Number of successful extensions: 17592
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 860
Number of HSP's that attempted gapping in prelim test: 9871
Number of HSP's gapped (non-prelim): 6733
length of query: 239
length of database: 18,247,518
effective HSP length: 99
effective length of query: 140
effective length of database: 14,498,784
effective search space: 2029829760
effective search space used: 2029829760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.