Guide to the Human Genome
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Name: PPID Sequence: fasta or formatted (370aa) NCBI GI: 4826932
Description:

peptidylprolyl isomerase D

Referenced in:

Peptidylprolyl Isomerases
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         31           1
 C cysteine            1.9          7           1
 D aspartate           7.0         26           2
 E glutamate           7.0         26           1
 F phenylalanine       4.9         18           2
 G glycine             9.2         34           2
 H histidine           2.4          9           1
 I isoleucine          7.0         26           2
 K lysine             10.5         39           2
 L leucine             7.6         28           2
 M methionine          1.6          6           1
 N asparagine          4.3         16           1
 P proline             4.6         17           1
 Q glutamine           4.1         15           1
 R arginine            3.2         12           2
 S serine              4.6         17           2
 T threonine           3.5         13           2
 V valine              5.4         20           2
 W tryptophan          0.8          3           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peptidylprolyl isomerase D 
PPIG                  0.271   peptidylprolyl isomerase G 
NKTR                  0.250   natural killer-tumor recognition sequence 
PPIF                  0.246   peptidylprolyl isomerase F precursor 
PPIA                  0.245   peptidylprolyl isomerase A 
PPIE                  0.238   peptidylprolyl isomerase E isoform 3 
PPIE                  0.238   peptidylprolyl isomerase E isoform 1 
PPIH                  0.234   peptidylprolyl isomerase H 
PPIB                  0.229   peptidylprolyl isomerase B precursor 
PPIE                  0.220   peptidylprolyl isomerase E isoform 2 
RANBP2                0.220   RAN binding protein 2 
PPIAL4G               0.216   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
LOC643997             0.216   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.216   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.216   PREDICTED: similar to peptidylprolyl isomerase A iso...
LOC650157             0.214   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.214   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.214   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIAL4B               0.212   peptidylprolyl isomerase A (cyclophilin A)-like 4B ...
PPIAL4A               0.212   peptidylprolyl isomerase A-like 4A 
PPIAL4C               0.212   peptidylprolyl isomerase A (cyclophilin A)-like 4C ...
PPIAL4E               0.209   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
LOC342541             0.203   PREDICTED: similar to TRIMCyp 
LOC342541             0.203   PREDICTED: similar to TRIMCyp 
LOC342541             0.203   PREDICTED: similar to TRIMCyp 
PPIC                  0.203   peptidylprolyl isomerase C 
LOC131055             0.201   PREDICTED: similar to TRIMCyp 
LOC131055             0.201   PREDICTED: similar to TRIMCyp 
LOC131055             0.201   PREDICTED: similar to TRIMCyp 
LOC390956             0.196   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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