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Search of human proteins with 46195789
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46195789 RAB40C, member RAS oncogene family [Homo sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46195789 RAB40C, member RAS oncogene family [Homo sapiens] 575 e-164
gi|5803163 RAB40B, member RAS oncogene family [Homo sapiens] 469 e-132
gi|73611940 RAB40A, member RAS oncogene family-like [Homo sapiens] 432 e-121
gi|56550077 RAB40A, member RAS oncogene family [Homo sapiens] 432 e-121
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 149 3e-36
gi|16933567 mel transforming oncogene [Homo sapiens] 147 1e-35
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 146 2e-35
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 146 2e-35
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 144 7e-35
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 144 7e-35
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 144 7e-35
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 137 8e-33
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 135 4e-32
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 135 4e-32
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 132 3e-31
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 132 3e-31
gi|50234889 RAB43 protein [Homo sapiens] 127 8e-30
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 122 4e-28
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 120 2e-27
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 119 2e-27
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 119 2e-27
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 119 4e-27
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 119 4e-27
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 116 2e-26
gi|19923483 GTPase Rab14 [Homo sapiens] 115 3e-26
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 115 4e-26
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 115 6e-26
gi|34485711 Ras-related protein Rab-27A [Homo sapiens] 115 6e-26
gi|34485709 Ras-related protein Rab-27A [Homo sapiens] 115 6e-26
gi|34485706 Ras-related protein Rab-27A [Homo sapiens] 115 6e-26
>gi|46195789 RAB40C, member RAS oncogene family [Homo sapiens]
Length = 281
Score = 575 bits (1481), Expect = e-164
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG 60
MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG
Sbjct: 1 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG 60
Query: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVP 120
RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVP
Sbjct: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVP 120
Query: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGM 180
RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGM
Sbjct: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGM 180
Query: 181 EKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGRS 240
EKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGRS
Sbjct: 181 EKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGRS 240
Query: 241 YSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRSNCKIS 281
YSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRSNCKIS
Sbjct: 241 YSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRSNCKIS 281
>gi|5803163 RAB40B, member RAS oncogene family [Homo sapiens]
Length = 278
Score = 469 bits (1206), Expect = e-132
Identities = 220/281 (78%), Positives = 257/281 (91%), Gaps = 3/281 (1%)
Query: 1 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG 60
M + GSPV++YD+LLKFLLVGDSDVGKGEIL SLQDGAAESPY + GIDYKTTTILLDG
Sbjct: 1 MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDG 60
Query: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVP 120
RRV+L+LWDTSGQGRFCTIFRSYSRGAQG++LVYDI NRWSFDGIDRWIKEIDEHAPGVP
Sbjct: 61 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVP 120
Query: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGM 180
+ILVGNRLHLAFKRQVPTEQA+AYAE+ +TFFEVSPLCNFN+ ESFTEL+RIVL+RHGM
Sbjct: 121 KILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGM 180
Query: 181 EKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGRS 240
+++WRP++V SLQDLCCRA+VSCTPVHL+DKLPLP+ ++SHLKSFSMANG+NA MMHG S
Sbjct: 181 DRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGS 240
Query: 241 YSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRSNCKIS 281
YSL + + K +SL++ K +RPPQSPP+NC+R++CKIS
Sbjct: 241 YSLTTSS---THKRSSLRKVKLVRPPQSPPKNCTRNSCKIS 278
>gi|73611940 RAB40A, member RAS oncogene family-like [Homo sapiens]
Length = 278
Score = 432 bits (1110), Expect = e-121
Identities = 206/281 (73%), Positives = 246/281 (87%), Gaps = 3/281 (1%)
Query: 1 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG 60
M + GSP ++YD+LLKFLLVGD DVGK EILESLQDG AESPY++ GIDYKTTTILLDG
Sbjct: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDG 60
Query: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVP 120
+RV+L+LWDTSGQGRFCTIFRSYSRGAQG++LVYDI NRWSF+G+DRWIK+I+EHAPGVP
Sbjct: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
Query: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGM 180
+ILVGNRLHLAFKRQVP EQA+AYAE+ +TFFEVSPLCNFN+IESFTEL+RIVL+RH +
Sbjct: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRL 180
Query: 181 EKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGRS 240
+ RP++V SLQDLCCR IVSCTPVHL+DKLPLP+ ++SHLKSFSMA G+NA MM G S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAKGLNARMMRGLS 240
Query: 241 YSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRSNCKIS 281
YSL + + K +SL + K + PPQSPP+NC+R++CKIS
Sbjct: 241 YSLTTSS---THKRSSLCKVKIVCPPQSPPKNCTRNSCKIS 278
>gi|56550077 RAB40A, member RAS oncogene family [Homo sapiens]
Length = 277
Score = 432 bits (1110), Expect = e-121
Identities = 207/281 (73%), Positives = 247/281 (87%), Gaps = 4/281 (1%)
Query: 1 MGSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDG 60
M + GSP ++YD+LLKFLLVGD DVGK EILESLQDGAAESPY++ GIDYKTTTILLDG
Sbjct: 1 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG 60
Query: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVP 120
+RV+L+LWDTSGQGRFCTIFRSYSRGAQG++LVYDI NRWSF+G+DRWIK+I+EHAPGVP
Sbjct: 61 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP 120
Query: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGM 180
+ILVGNRLHLAFKRQVP EQA+AYAE+ +TFFEVSPLCNFN+IESFTEL+RIVL+RH M
Sbjct: 121 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM 180
Query: 181 EKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTIKSHLKSFSMANGMNAVMMHGRS 240
+ RP++V SLQDLCCR IVSCTPVHL+DKLPLP T++SHLKSFSMA G+NA MM G S
Sbjct: 181 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS 240
Query: 241 YSLASGAGGGGSKGNSLKRSKSIRPPQSPPQNCSRSNCKIS 281
YSL + + + +SL + + + PPQSPP+NC+R++CKIS
Sbjct: 241 YSLTTSS----THKSSLCKVEIVCPPQSPPKNCTRNSCKIS 277
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 149 bits (375), Expect = 3e-36
Identities = 76/181 (41%), Positives = 118/181 (65%), Gaps = 1/181 (0%)
Query: 9 KSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELW 68
K+YD+L K LL+GDS VGK ++ + + Y + GID+K T+ ++G++++L++W
Sbjct: 3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNR 127
DT+GQ RF TI +Y RGA GI+LVYDIT+ SF+ I W+K I E+A GV R+L+GN+
Sbjct: 63 DTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNK 122
Query: 128 LHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKIWRPN 187
+ KR+V EQA A ++ + FFE S + NV E+F+ L+R +L++ G + N
Sbjct: 123 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGN 182
Query: 188 R 188
+
Sbjct: 183 K 183
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 147 bits (370), Expect = 1e-35
Identities = 78/165 (47%), Positives = 105/165 (63%), Gaps = 1/165 (0%)
Query: 9 KSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELW 68
K+YDYL K LL+GDS VGK +L + A S + + GID+K TI LDG+R++L++W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPG-VPRILVGNR 127
DT+GQ RF TI +Y RGA GI+LVYDITN SFD I WI+ I+EHA V ++++GN+
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 128 LHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSR 172
+ KRQV E+ A + F E S N NV +F L+R
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 146 bits (368), Expect = 2e-35
Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 1/170 (0%)
Query: 9 KSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELW 68
K+YD L K LL+GDS VGK +L D A + + + GID+K T+ L G++++L++W
Sbjct: 4 KTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIW 63
Query: 69 DTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNR 127
DT+GQ RF TI SY RGA GI+LVYDITN SF+ I +W++ IDEHA V R+L+GN+
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNK 123
Query: 128 LHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMR 177
+ KR VP + A ++ + FFE S N N+ ++F L+ +L +
Sbjct: 124 CDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK 173
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 146 bits (368), Expect = 2e-35
Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 1/170 (0%)
Query: 9 KSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELW 68
K+YDYL K LL+GDS VGK +L + A + + + GID+K TI LDG++++L++W
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPG-VPRILVGNR 127
DT+GQ RF TI +Y RGA GI+LVYDITN SFD I WI+ I+EHA V R+++GN+
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
Query: 128 LHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMR 177
+ KRQV E+ A + F E S + NV E+F L+R ++ +
Sbjct: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTK 172
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 144 bits (364), Expect = 7e-35
Identities = 74/181 (40%), Positives = 116/181 (64%), Gaps = 1/181 (0%)
Query: 9 KSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELW 68
K+YD+L K LL+GDS VGK ++ + + Y + GID+K T+ ++G++++L++W
Sbjct: 127 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 186
Query: 69 DTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNR 127
DT+GQ RF TI +Y RGA GI+L YDIT+ SF+ I W+K I E+A GV +L+GN+
Sbjct: 187 DTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNK 246
Query: 128 LHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKIWRPN 187
+ KR+V EQA A ++ + FFE S + NV E+F+ L+R +L++ G + N
Sbjct: 247 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGN 306
Query: 188 R 188
+
Sbjct: 307 K 307
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 144 bits (364), Expect = 7e-35
Identities = 74/181 (40%), Positives = 116/181 (64%), Gaps = 1/181 (0%)
Query: 9 KSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELW 68
K+YD+L K LL+GDS VGK ++ + + Y + GID+K T+ ++G++++L++W
Sbjct: 127 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 186
Query: 69 DTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNR 127
DT+GQ RF TI +Y RGA GI+L YDIT+ SF+ I W+K I E+A GV +L+GN+
Sbjct: 187 DTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNK 246
Query: 128 LHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKIWRPN 187
+ KR+V EQA A ++ + FFE S + NV E+F+ L+R +L++ G + N
Sbjct: 247 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGN 306
Query: 188 R 188
+
Sbjct: 307 K 307
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 144 bits (364), Expect = 7e-35
Identities = 74/181 (40%), Positives = 116/181 (64%), Gaps = 1/181 (0%)
Query: 9 KSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELW 68
K+YD+L K LL+GDS VGK ++ + + Y + GID+K T+ ++G++++L++W
Sbjct: 127 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVW 186
Query: 69 DTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNR 127
DT+GQ RF TI +Y RGA GI+L YDIT+ SF+ I W+K I E+A GV +L+GN+
Sbjct: 187 DTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNK 246
Query: 128 LHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKIWRPN 187
+ KR+V EQA A ++ + FFE S + NV E+F+ L+R +L++ G + N
Sbjct: 247 CDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGN 306
Query: 188 R 188
+
Sbjct: 307 K 307
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 137 bits (346), Expect = 8e-33
Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 5/175 (2%)
Query: 5 GSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVR 64
G+ YDYL K +L+GDS VGK +L + G+++ T +I +DG+ ++
Sbjct: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 65 LELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRIL 123
++WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RW+KE+ +HA + +L
Sbjct: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
Query: 124 VGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESF----TELSRIV 174
VGN+ L R VPT++ARA+AEKN ++F E S L + NV E+F TE+ RIV
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 176
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 135 bits (340), Expect = 4e-32
Identities = 71/170 (41%), Positives = 105/170 (61%), Gaps = 1/170 (0%)
Query: 11 YDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELWDT 70
YDYL K LL+GDS VGK +L D Y + G+D+K TI LDG+ ++L++WDT
Sbjct: 8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 67
Query: 71 SGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNRLH 129
+GQ RF TI SY RGA GI++VYD+T++ SF+ + +W++EID +A V ++LVGN+
Sbjct: 68 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 127
Query: 130 LAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHG 179
L K+ V A+ +A+ + F E S NV +SF ++ + R G
Sbjct: 128 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 177
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 135 bits (340), Expect = 4e-32
Identities = 71/175 (40%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 5 GSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVR 64
G+ YDYL K +L+GDS VGK +L + G+++ T +I +DG+ ++
Sbjct: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
Query: 65 LELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRIL 123
++WDT+GQ R+ I +Y RGA G LLVYDI +++ ++RW+KE+ +HA + +L
Sbjct: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
Query: 124 VGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESF----TELSRIV 174
VGN+ L R VPT++ARA+AEKN ++F E S L + NV +F TE+ RIV
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 132 bits (332), Expect = 3e-31
Identities = 69/170 (40%), Positives = 104/170 (61%), Gaps = 1/170 (0%)
Query: 11 YDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELWDT 70
YDYL K LL+GDS VGK +L D Y + G+D+K TI LDG+ ++L++WDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 71 SGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNRLH 129
+GQ RF TI SY RGA GI++VYD+T++ S+ + +W++EID +A V ++LVGN+
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 130 LAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHG 179
L K+ V A+ +A+ + F E S NV ++F ++ + R G
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 174
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 132 bits (332), Expect = 3e-31
Identities = 66/167 (39%), Positives = 102/167 (61%)
Query: 9 KSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELW 68
+ YD+L K L++GDS VGK +L D Y + G+D+K T+ ++G +V+L++W
Sbjct: 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVPRILVGNRL 128
DT+GQ RF TI +Y RG G+++VYD+T+ SF + RW+ EI+++ V RILVGN+
Sbjct: 63 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKN 122
Query: 129 HLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVL 175
++ V TE A +A + + FE S N NV E F ++ +VL
Sbjct: 123 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 169
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 127 bits (320), Expect = 8e-30
Identities = 66/177 (37%), Positives = 110/177 (62%), Gaps = 2/177 (1%)
Query: 5 GSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVR 64
G P + YD+L K +LVGD+ VGK +++ + GA + G+D+ T+ + G+RV+
Sbjct: 9 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 68
Query: 65 LELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRIL 123
L++WDT+GQ RF TI +SY R A G +L YDIT R SF + WI+++ ++A + ++L
Sbjct: 69 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 128
Query: 124 VGNRLHLAFKRQVPTEQARAYAEK-NCMTFFEVSPLCNFNVIESFTELSRIVLMRHG 179
+GN+ L+ R+V +A++ AE + + E S + NV E+F ++ ++MRHG
Sbjct: 129 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 185
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 122 bits (306), Expect = 4e-28
Identities = 63/174 (36%), Positives = 102/174 (58%), Gaps = 1/174 (0%)
Query: 2 GSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGR 61
G + S +++DY+ K L++G+S VGK L D + S + + GID+K T+ + +
Sbjct: 18 GQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEK 77
Query: 62 RVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVP 120
R++L++WDT+GQ R+ TI +Y RGA G +L+YDITN SF+ + W +I ++
Sbjct: 78 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ 137
Query: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIV 174
ILVGN+ + +R + TE+ + E+ FFE S N NV ++F L I+
Sbjct: 138 VILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 120 bits (300), Expect = 2e-27
Identities = 70/200 (35%), Positives = 114/200 (57%), Gaps = 8/200 (4%)
Query: 2 GSQG----SPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTIL 57
G QG P + D+ L+ +++G VGK ++E D + G+D+K T+
Sbjct: 26 GGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE 85
Query: 58 LDGRRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA- 116
L G+++RL++WDT+GQ RF +I +Y R A+GI+LVYDIT + +FD + +W+K ID++A
Sbjct: 86 LRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS 145
Query: 117 PGVPRILVGNRLHLAFKRQVPTEQARAYAEK-NCMTFFEVSPLCNFNVIESFTELSRIVL 175
+LVGN+L R++ +Q +A++ M F E S NFNV E F +L +L
Sbjct: 146 EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 205
Query: 176 MRHGMEKIWR--PNRVFSLQ 193
+ ++ + N + SLQ
Sbjct: 206 KKMPLDILRNELSNSILSLQ 225
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 119 bits (299), Expect = 2e-27
Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 1/170 (0%)
Query: 2 GSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGR 61
G + + +++DY+ K L++G+S VGK L D + + GID+K T+ +
Sbjct: 10 GVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 69
Query: 62 RVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVP 120
RV+L++WDT+GQ R+ TI +Y RGA G +L+YDITN SF+ + W +I ++
Sbjct: 70 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ 129
Query: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTEL 170
ILVGN+ + +R VPTE+ + AE+ FFE S N +V ++F L
Sbjct: 130 VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 179
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 119 bits (299), Expect = 2e-27
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
Query: 2 GSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGR 61
G + S +++DY+ K L++G+S VGK L D + + + GID+K TI + +
Sbjct: 10 GQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK 69
Query: 62 RVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVP 120
R++L++WDT+GQ R+ TI +Y RGA G +L+YDITN SF+ + W +I ++
Sbjct: 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ 129
Query: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIV 174
+LVGN+ + +R V +E+ R A+ FFE S N NV ++F L ++
Sbjct: 130 VLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 183
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 119 bits (297), Expect = 4e-27
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 2/177 (1%)
Query: 3 SQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGA-AESPYAYSNGIDYKTTTILLDGR 61
S G V YD K +LVGDS VGK +L +DGA + + GID++ + +DG
Sbjct: 52 SLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV 111
Query: 62 RVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAP-GVP 120
+V+L++WDT+GQ RF ++ +Y R A +LL+YD+TN+ SFD I W+ EI E+A V
Sbjct: 112 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA 171
Query: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMR 177
+L+GN++ A +R V E A++ + F E S NV +FT +++ + R
Sbjct: 172 LMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQR 228
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 119 bits (297), Expect = 4e-27
Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 1/174 (0%)
Query: 2 GSQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGR 61
G + + +++DY+ K LL+G+S VGK L D + + + GID+K T+ +
Sbjct: 10 GPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK 69
Query: 62 RVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVP 120
R++L++WDT+GQ R+ TI +Y RGA G LL+YDI N+ SF + W +I ++
Sbjct: 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ 129
Query: 121 RILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIV 174
ILVGN+ L +R VP E R A+ FFE S N NV + F L ++
Sbjct: 130 VILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 116 bits (291), Expect = 2e-26
Identities = 57/164 (34%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 10 SYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELWD 69
+Y YL K++++GD+ VGK +L D + + + G+++ I +DG++++L++WD
Sbjct: 2 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 61
Query: 70 TSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNRL 128
T+GQ F +I RSY RGA G LLVYDIT R +F+ + W+++ +H+ + +L+GN+
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 121
Query: 129 HLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSR 172
L +R+V E+ A+A ++ + F E S NV E+F ++
Sbjct: 122 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 115 bits (289), Expect = 3e-26
Identities = 56/164 (34%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Query: 10 SYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELWD 69
+Y Y+ K++++GD VGK +L + + ++ G+++ T I + G++++L++WD
Sbjct: 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 66
Query: 70 TSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNRL 128
T+GQ RF + RSY RGA G L+VYDIT R +++ + W+ + P IL+GN+
Sbjct: 67 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 126
Query: 129 HLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSR 172
L +R V E+A+ +AE+N + F E S NV ++F E ++
Sbjct: 127 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 170
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 115 bits (288), Expect = 4e-26
Identities = 59/168 (35%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 9 KSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELW 68
++YD+L KFL++G + GK +L + + ++ G+++ + + + G+ V+L++W
Sbjct: 3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 62
Query: 69 DTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA-PGVPRILVGNR 127
DT+GQ RF ++ RSY RGA G LLVYDIT+R +++ + W+ + A P + IL GN+
Sbjct: 63 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 122
Query: 128 LHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVL 175
L +R+V +A +A++N + F E S L NV E+F + +R +L
Sbjct: 123 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 170
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 115 bits (287), Expect = 6e-26
Identities = 56/164 (34%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 10 SYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVRLELWD 69
+Y YL K++++GD+ VGK +L D + + + G+++ + +DG++++L++WD
Sbjct: 2 TYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 61
Query: 70 TSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEH-APGVPRILVGNRL 128
T+GQ F +I RSY RGA G LLVYDIT R +F+ + W+++ +H + + +L+GN+
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 121
Query: 129 HLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSR 172
L +R V E+ A+A ++ + F E S NV E+F ++
Sbjct: 122 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 165
>gi|34485711 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 115 bits (287), Expect = 6e-26
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 11 YDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLD----------G 60
YDYL+KFL +GDS VGK +L DG S + + GID++ ++ G
Sbjct: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
Query: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA---- 116
+R+ L+LWDT+GQ RF ++ ++ R A G LL++D+TN SF + WI ++ HA
Sbjct: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
Query: 117 PGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVL- 175
P + +L GN+ L +R V E+A A AEK + +FE S N+ ++ L +++
Sbjct: 126 PDI--VLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMK 183
Query: 176 -MRHGMEKIWRPNRV 189
M ++K W P V
Sbjct: 184 RMERCVDKSWIPEGV 198
>gi|34485709 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 115 bits (287), Expect = 6e-26
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 11 YDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLD----------G 60
YDYL+KFL +GDS VGK +L DG S + + GID++ ++ G
Sbjct: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
Query: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA---- 116
+R+ L+LWDT+GQ RF ++ ++ R A G LL++D+TN SF + WI ++ HA
Sbjct: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
Query: 117 PGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVL- 175
P + +L GN+ L +R V E+A A AEK + +FE S N+ ++ L +++
Sbjct: 126 PDI--VLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMK 183
Query: 176 -MRHGMEKIWRPNRV 189
M ++K W P V
Sbjct: 184 RMERCVDKSWIPEGV 198
>gi|34485706 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 115 bits (287), Expect = 6e-26
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 11 YDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLD----------G 60
YDYL+KFL +GDS VGK +L DG S + + GID++ ++ G
Sbjct: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
Query: 61 RRVRLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHA---- 116
+R+ L+LWDT+GQ RF ++ ++ R A G LL++D+TN SF + WI ++ HA
Sbjct: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
Query: 117 PGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVL- 175
P + +L GN+ L +R V E+A A AEK + +FE S N+ ++ L +++
Sbjct: 126 PDI--VLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMK 183
Query: 176 -MRHGMEKIWRPNRV 189
M ++K W P V
Sbjct: 184 RMERCVDKSWIPEGV 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,331,045
Number of Sequences: 37866
Number of extensions: 496573
Number of successful extensions: 2231
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1835
Number of HSP's gapped (non-prelim): 249
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.