Guide to the Human Genome
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Name: RAB40AL Sequence: fasta or formatted (278aa) NCBI GI: 73611940
Description:

RAB40A, member RAS oncogene family-like

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         14           1
 C cysteine            3.2          9           2
 D aspartate           4.3         12           1
 E glutamate           4.0         11           2
 F phenylalanine       4.0         11           2
 G glycine             6.5         18           2
 H histidine           2.5          7           1
 I isoleucine          5.8         16           2
 K lysine              6.5         18           2
 L leucine            12.2         34           2
 M methionine          1.8          5           2
 N asparagine          2.9          8           1
 P proline             5.4         15           2
 Q glutamine           3.6         10           1
 R arginine            7.6         21           1
 S serine              9.7         27           2
 T threonine           5.0         14           3
 V valine              6.1         17           1
 W tryptophan          1.4          4           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB40A, member RAS oncogene family-like 
RAB40A                0.972   RAB40A, member RAS oncogene family 
RAB40B                0.872   RAB40B, member RAS oncogene family 
RAB40C                0.754   RAB40C, member RAS oncogene family 
RAB13                 0.228   RAB13, member RAS oncogene family 
RAB8A                 0.220   mel transforming oncogene 
LOC100131294          0.220   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.220   PREDICTED: similar to hCG24991 
LOC100131294          0.220   PREDICTED: similar to hCG24991 
RAB8B                 0.215   RAB8B, member RAS oncogene family 
RAB10                 0.213   ras-related GTP-binding protein RAB10 
RAB1A                 0.204   RAB1A, member RAS oncogene family isoform 1 
RAB1B                 0.198   RAB1B, member RAS oncogene family 
RAB11B                0.198   RAB11B, member RAS oncogene family 
RAB11A                0.198   Ras-related protein Rab-11A 
RAB35                 0.194   RAB35, member RAS oncogene family 
RAB43                 0.194   RAB43 protein 
RAB12                 0.189   RAB12, member RAS oncogene family 
RAB3C                 0.183   RAB3C, member RAS oncogene family 
RAB3B                 0.181   RAB3B, member RAS oncogene family 
RAB3D                 0.180   RAB3D, member RAS oncogene family 
RAB3A                 0.176   RAB3A, member RAS oncogene family 
RAB19                 0.172   RAB19, member RAS oncogene family 
RAB2A                 0.170   RAB2A, member RAS oncogene family 
RAB14                 0.167   GTPase Rab14 
RAB2B                 0.167   RAB2B protein isoform 1 
RAB30                 0.167   RAB30, member RAS oncogene family 
RAB4B                 0.165   ras-related GTP-binding protein 4b 
RAB26                 0.165   RAB26, member RAS oncogene family 
RAB37                 0.159   RAB37, member RAS oncogene family isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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