Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 45827806
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45827806 atlastin 3 [Homo sapiens]
(541 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45827806 atlastin 3 [Homo sapiens] 1086 0.0
gi|208610002 atlastin GTPase 2 isoform 2 [Homo sapiens] 707 0.0
gi|208610000 atlastin GTPase 2 isoform 1 [Homo sapiens] 705 0.0
gi|19923445 atlastin GTPase 1 isoform a [Homo sapiens] 682 0.0
gi|189181742 atlastin GTPase 1 isoform b [Homo sapiens] 681 0.0
gi|74024917 atlastin GTPase 1 isoform b [Homo sapiens] 681 0.0
gi|14149631 ring finger protein 112 [Homo sapiens] 87 5e-17
gi|38327558 guanylate binding protein 2, interferon-inducible [H... 85 2e-16
gi|197333737 guanylate-binding protein 5 [Homo sapiens] 83 6e-16
gi|16418425 guanylate-binding protein 5 [Homo sapiens] 83 6e-16
gi|166706903 guanylate binding protein 1, interferon-inducible, ... 75 1e-13
gi|112382372 guanylate binding protein 3 [Homo sapiens] 71 2e-12
gi|31377634 guanylate binding protein 4 [Homo sapiens] 69 8e-12
gi|148234215 guanylate binding protein 4-like [Homo sapiens] 67 5e-11
gi|157671915 guanylate binding protein family, member 6 [Homo sa... 66 9e-11
gi|51479143 ATP synthase, H+ transporting, mitochondrial F0 comp... 31 3.3
gi|51479141 ATP synthase, H+ transporting, mitochondrial F0 comp... 31 3.3
gi|51479139 ATP synthase, H+ transporting, mitochondrial F0 comp... 31 3.3
gi|51479137 ATP synthase, H+ transporting, mitochondrial F0 comp... 31 3.3
gi|18644883 ATP synthase, H+ transporting, mitochondrial F0 comp... 31 3.3
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 30 4.3
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 30 4.3
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 30 4.3
gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens] 30 4.3
gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a ... 30 5.6
gi|172072684 PR domain containing 1, with ZNF domain isoform 1 [... 30 7.3
gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [H... 30 7.3
gi|221139761 zinc finger protein 853 [Homo sapiens] 29 9.6
gi|120444924 ATP/GTP binding protein-like 1 [Homo sapiens] 29 9.6
>gi|45827806 atlastin 3 [Homo sapiens]
Length = 541
Score = 1086 bits (2808), Expect = 0.0
Identities = 541/541 (100%), Positives = 541/541 (100%)
Query: 1 MLSPQRVAAAASRGADDAMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDV 60
MLSPQRVAAAASRGADDAMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDV
Sbjct: 1 MLSPQRVAAAASRGADDAMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDV 60
Query: 61 VVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQ 120
VVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQ
Sbjct: 61 VVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQ 120
Query: 121 IWSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE 180
IWSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE
Sbjct: 121 IWSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQE 180
Query: 181 DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKE 240
DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKE
Sbjct: 181 DDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKE 240
Query: 241 HQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYV 300
HQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYV
Sbjct: 241 HQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYV 300
Query: 301 LNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAK 360
LNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAK
Sbjct: 301 LNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAK 360
Query: 361 DIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEE 420
DIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEE
Sbjct: 361 DIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEE 420
Query: 421 IKELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLL 480
IKELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLL
Sbjct: 421 IKELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLL 480
Query: 481 LIALLTWGYIRYSGQYRELGGAIDFGAAYVLEQASSHIGNSTQATVRDAVVGRPSMDKKA 540
LIALLTWGYIRYSGQYRELGGAIDFGAAYVLEQASSHIGNSTQATVRDAVVGRPSMDKKA
Sbjct: 481 LIALLTWGYIRYSGQYRELGGAIDFGAAYVLEQASSHIGNSTQATVRDAVVGRPSMDKKA 540
Query: 541 Q 541
Q
Sbjct: 541 Q 541
>gi|208610002 atlastin GTPase 2 isoform 2 [Homo sapiens]
Length = 583
Score = 707 bits (1825), Expect = 0.0
Identities = 339/517 (65%), Positives = 421/517 (81%), Gaps = 6/517 (1%)
Query: 15 ADDAMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKS 74
+D+ M+ KP PVQ+VL +D H+FELDE+AL ILLQ+HIRDL++VVVSVAGAFRKGKS
Sbjct: 51 SDEVMK--KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKS 108
Query: 75 FILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGK 134
F+LDFMLRY+Y++ +W+G EPLTGF+WRGG + ETTGIQ+W+EVF +++P G
Sbjct: 109 FLLDFMLRYMYNKDSQ---SWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGT 165
Query: 135 KVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGR 194
KVAV+LMDTQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGR
Sbjct: 166 KVAVLLMDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGR 225
Query: 195 LAMDEIFQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIH 254
LAM+EI+QKPFQTLMFL+RDWS+PYE+SYGL+GG FL+KRLQVK++QHEE+QNVR HIH
Sbjct: 226 LAMEEIYQKPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIH 285
Query: 255 SCFSDVTCFLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGS 314
+CFS++ CFLLPHPGL+VAT+P FDG+LKDI +FK +L+ L+P +L P L+EKEI+GS
Sbjct: 286 NCFSNLGCFLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGS 345
Query: 315 KVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGE 374
KVTCR L+EYFKAYIKIYQGE+LPHPKSMLQATAEANNLAA A A+D Y +ME+VCGG+
Sbjct: 346 KVTCRDLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVAGARDTYCKSMEQVCGGD 405
Query: 375 KPYLSPDILEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGS 434
KPY++P LE KH + K++A+ F+ KKMGG +F RYQ +LE EI+E Y NF KHN
Sbjct: 406 KPYIAPSDLERKHLDLKEVAIKQFRSVKKMGGDEFCRRYQDQLEAEIEETYANFIKHNDG 465
Query: 435 KNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSG 494
KN+F RTPA LF + A+YI SGLTGFIGL +A L N ++GL LI L TW Y++YSG
Sbjct: 466 KNIFYAARTPATLFAVMFAMYIISGLTGFIGLNSIAVLCNLVMGLALIFLCTWAYVKYSG 525
Query: 495 QYRELGGAIDFGAAYVLEQASSHIG-NSTQATVRDAV 530
++RE+G ID A + EQ +G N + +R +V
Sbjct: 526 EFREIGTVIDQIAETLWEQVLKPLGDNLMEENIRQSV 562
>gi|208610000 atlastin GTPase 2 isoform 1 [Homo sapiens]
Length = 579
Score = 705 bits (1820), Expect = 0.0
Identities = 337/509 (66%), Positives = 417/509 (81%), Gaps = 5/509 (0%)
Query: 15 ADDAMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKS 74
+D+ M+ KP PVQ+VL +D H+FELDE+AL ILLQ+HIRDL++VVVSVAGAFRKGKS
Sbjct: 51 SDEVMK--KPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKS 108
Query: 75 FILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGK 134
F+LDFMLRY+Y++ +W+G EPLTGF+WRGG + ETTGIQ+W+EVF +++P G
Sbjct: 109 FLLDFMLRYMYNKDSQ---SWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFVIDRPNGT 165
Query: 135 KVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGR 194
KVAV+LMDTQGAFDSQST+KDCAT+FALSTMTSSVQ+YNLSQNIQEDDLQ LQLFTEYGR
Sbjct: 166 KVAVLLMDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGR 225
Query: 195 LAMDEIFQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIH 254
LAM+EI+QKPFQTLMFL+RDWS+PYE+SYGL+GG FL+KRLQVK++QHEE+QNVR HIH
Sbjct: 226 LAMEEIYQKPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIH 285
Query: 255 SCFSDVTCFLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGS 314
+CFS++ CFLLPHPGL+VAT+P FDG+LKDI +FK +L+ L+P +L P L+EKEI+GS
Sbjct: 286 NCFSNLGCFLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGS 345
Query: 315 KVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGE 374
KVTCR L+EYFKAYIKIYQGE+LPHPKSMLQATAEANNLAA A A+D Y +ME+VCGG+
Sbjct: 346 KVTCRDLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVAGARDTYCKSMEQVCGGD 405
Query: 375 KPYLSPDILEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGS 434
KPY++P LE KH + K++A+ F+ KKMGG +F RYQ +LE EI+E Y NF KHN
Sbjct: 406 KPYIAPSDLERKHLDLKEVAIKQFRSVKKMGGDEFCRRYQDQLEAEIEETYANFIKHNDG 465
Query: 435 KNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSG 494
KN+F RTPA LF + A+YI SGLTGFIGL +A L N ++GL LI L TW Y++YSG
Sbjct: 466 KNIFYAARTPATLFAVMFAMYIISGLTGFIGLNSIAVLCNLVMGLALIFLCTWAYVKYSG 525
Query: 495 QYRELGGAIDFGAAYVLEQASSHIGNSTQ 523
++RE+G ID A + EQ S + T+
Sbjct: 526 EFREIGTVIDQIAETLWEQVFSKLFEVTR 554
>gi|19923445 atlastin GTPase 1 isoform a [Homo sapiens]
Length = 558
Score = 682 bits (1760), Expect = 0.0
Identities = 329/495 (66%), Positives = 406/495 (82%), Gaps = 4/495 (0%)
Query: 23 KPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLR 82
K GPVQV++V KD HSFELDE AL ILL + +RD +VV VSVAGAFRKGKSF++DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 83 YLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAVVLMD 142
Y+Y+Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIWSE+F + KP GKKVAV+LMD
Sbjct: 90 YMYNQESV---DWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146
Query: 143 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 202
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+E F
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 206
Query: 203 KPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTC 262
KPFQ+L+FLVRDWSFPYE+SYG GG FL+KRL+V +QHEE+QNVR HIHSCF++++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISC 266
Query: 263 FLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLL 322
FLLPHPGL+VAT+P+FDGKLK+I EF + L+ LIP++L+P L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 323 EYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDI 382
EYFKAYIKIYQGE+LPHPKSMLQATAEANNLAA A+AKD Y MEE+CGG+KP+L+P+
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPND 386
Query: 383 LEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 442
L+ KH + K+ ++ F+ KKMGG++FS RY Q+LE EI ELY + KHN SKN+F R
Sbjct: 387 LQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAAR 446
Query: 443 TPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGA 502
TPA LF I Y+ +G+TGFIGL+++A L N ++GL LI L TW YIRYSG+YRELG
Sbjct: 447 TPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAV 506
Query: 503 IDFGAAYVLEQASSH 517
ID AA + +Q S++
Sbjct: 507 IDQVAAALWDQGSTN 521
>gi|189181742 atlastin GTPase 1 isoform b [Homo sapiens]
Length = 553
Score = 681 bits (1758), Expect = 0.0
Identities = 329/492 (66%), Positives = 404/492 (82%), Gaps = 4/492 (0%)
Query: 23 KPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLR 82
K GPVQV++V KD HSFELDE AL ILL + +RD +VV VSVAGAFRKGKSF++DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 83 YLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAVVLMD 142
Y+Y+Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIWSE+F + KP GKKVAV+LMD
Sbjct: 90 YMYNQESV---DWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146
Query: 143 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 202
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+E F
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 206
Query: 203 KPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTC 262
KPFQ+L+FLVRDWSFPYE+SYG GG FL+KRL+V +QHEE+QNVR HIHSCF++++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISC 266
Query: 263 FLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLL 322
FLLPHPGL+VAT+P+FDGKLK+I EF + L+ LIP++L+P L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 323 EYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDI 382
EYFKAYIKIYQGE+LPHPKSMLQATAEANNLAA A+AKD Y MEE+CGG+KP+L+P+
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPND 386
Query: 383 LEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 442
L+ KH + K+ ++ F+ KKMGG++FS RY Q+LE EI ELY + KHN SKN+F R
Sbjct: 387 LQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAAR 446
Query: 443 TPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGA 502
TPA LF I Y+ +G+TGFIGL+++A L N ++GL LI L TW YIRYSG+YRELG
Sbjct: 447 TPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAV 506
Query: 503 IDFGAAYVLEQA 514
ID AA + +QA
Sbjct: 507 IDQVAAALWDQA 518
>gi|74024917 atlastin GTPase 1 isoform b [Homo sapiens]
Length = 553
Score = 681 bits (1758), Expect = 0.0
Identities = 329/492 (66%), Positives = 404/492 (82%), Gaps = 4/492 (0%)
Query: 23 KPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLR 82
K GPVQV++V KD HSFELDE AL ILL + +RD +VV VSVAGAFRKGKSF++DFMLR
Sbjct: 31 KAGPVQVLIV-KDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89
Query: 83 YLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAVVLMD 142
Y+Y+Q+ +W+GD EPLTGFSWRGGS+ ETTGIQIWSE+F + KP GKKVAV+LMD
Sbjct: 90 YMYNQESV---DWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146
Query: 143 TQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQ 202
TQG FDSQST++D AT+FALSTM SS+Q+YNLSQN+QEDDLQ LQLFTEYGRLAM+E F
Sbjct: 147 TQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFL 206
Query: 203 KPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTC 262
KPFQ+L+FLVRDWSFPYE+SYG GG FL+KRL+V +QHEE+QNVR HIHSCF++++C
Sbjct: 207 KPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISC 266
Query: 263 FLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLL 322
FLLPHPGL+VAT+P+FDGKLK+I EF + L+ LIP++L+P L KEING+K+TCRGL+
Sbjct: 267 FLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLV 326
Query: 323 EYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDI 382
EYFKAYIKIYQGE+LPHPKSMLQATAEANNLAA A+AKD Y MEE+CGG+KP+L+P+
Sbjct: 327 EYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPND 386
Query: 383 LEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 442
L+ KH + K+ ++ F+ KKMGG++FS RY Q+LE EI ELY + KHN SKN+F R
Sbjct: 387 LQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAAR 446
Query: 443 TPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGA 502
TPA LF I Y+ +G+TGFIGL+++A L N ++GL LI L TW YIRYSG+YRELG
Sbjct: 447 TPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAV 506
Query: 503 IDFGAAYVLEQA 514
ID AA + +QA
Sbjct: 507 IDQVAAALWDQA 518
>gi|14149631 ring finger protein 112 [Homo sapiens]
Length = 632
Score = 86.7 bits (213), Expect = 5e-17
Identities = 77/249 (30%), Positives = 115/249 (46%), Gaps = 21/249 (8%)
Query: 56 RDLDVVVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPE 115
RD V +++V G GKSF+L+ +L+ L ESG E L G W G++
Sbjct: 165 RDTPVCLLAVLGEQHSGKSFLLNHLLQGLPGL-ESGEGGRPRGGEASLQGCRW--GANGL 221
Query: 116 TTGIQIWSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLS 175
GI +WS F + K G KKVAV L+DT A + + + + AL+TM SS QI + S
Sbjct: 222 ARGIWMWSHPFLLGKEG-KKVAVFLVDTGDAMSPELSRETRIKLCALTTMLSSYQILSTS 280
Query: 176 QNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKR 235
Q +++ DL L++F + P Q L LVRD S P + QG + + +R
Sbjct: 281 QELKDTDLDYLEMFVHVAEVMGKHYGMVPIQHLDLLVRDSSHPNKAG---QGHVGNIFQR 337
Query: 236 LQVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGL----QVATSP--DFDGKLKDIAGEF 289
L + + +E+ + C LLP PG Q SP D D + + G +
Sbjct: 338 LSGRYPKVQELLQGKR--------ARCCLLPAPGRRRMNQGHASPGGDTDDDFRHLLGAY 389
Query: 290 KEQLQALIP 298
+ + P
Sbjct: 390 VSDVLSAAP 398
>gi|38327558 guanylate binding protein 2, interferon-inducible [Homo
sapiens]
Length = 591
Score = 84.7 bits (208), Expect = 2e-16
Identities = 103/434 (23%), Positives = 181/434 (41%), Gaps = 57/434 (13%)
Query: 18 AMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFIL 77
A E + PGP+ ++ K Q + + S + Q VVVV++ G +R GKS+++
Sbjct: 2 APEINLPGPMSLIDNTKGQLVVNPEALKILSAITQP------VVVVAIVGLYRTGKSYLM 55
Query: 78 DFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVA 137
+ K +G N GFS T GI +W V P +
Sbjct: 56 N---------KLAGKKN----------GFSLGSTVKSHTKGIWMWC----VPHPKKPEHT 92
Query: 138 VVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEY---- 192
+VL+DT+G D + ++ + IFAL+ + SS +YN I + + QL TE
Sbjct: 93 LVLLDTEGLGDIEKGDNENDSWIFALAILLSSTFVYNSMGTINQQAMDQLHYVTELTDRI 152
Query: 193 ------GRLAMDEI--FQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVK---EH 241
G ++D+ F F ++ +RD++ E +L+ L+++ +
Sbjct: 153 KANSSPGNNSVDDSADFVSFFPAFVWTLRDFTLELEVDGEPITADDYLELSLKLRKGTDK 212
Query: 242 QHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVL 301
+ + + R I F CF+ P + + K +++ +F EQ+ Y+L
Sbjct: 213 KSKSFNDPRLCIRKFFPKRKCFVFDWPAPKKYLAHLEQLKEEELNPDFIEQVAEFCSYIL 272
Query: 302 NPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKD 361
+ S + G V L Y+ DLP ++ + A A+ N AA A
Sbjct: 273 SHSNVKTLS-GGIPVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVEKAIA 331
Query: 362 IYYNNMEEVCGGEKPYLSPDILEE---KHCEFKQLALDHFKKTKKMGGKDFSFRYQQELE 418
Y M G+K L + L+E H + ++ A++ F K KD +Q++L
Sbjct: 332 HYEQQM-----GQKVQLPTETLQELLDLHRDSEREAIEVFMKN---SFKDVDQMFQRKLG 383
Query: 419 EEIKELYENFCKHN 432
+++ ++FCK N
Sbjct: 384 AQLEARRDDFCKQN 397
>gi|197333737 guanylate-binding protein 5 [Homo sapiens]
Length = 586
Score = 83.2 bits (204), Expect = 6e-16
Identities = 104/399 (26%), Positives = 162/399 (40%), Gaps = 65/399 (16%)
Query: 60 VVVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGI 119
VVVV++ G +R GKS++++ K +G + GFS T GI
Sbjct: 38 VVVVAIVGLYRTGKSYLMN---------KLAGKNK----------GFSVASTVQSHTKGI 78
Query: 120 QIWSEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 178
IW V P +VL+DT+G D ++ K+ IFAL+ + SS +YN I
Sbjct: 79 WIW----CVPHPNWPNHTLVLLDTEGLGDVEKADNKNDIQIFALALLLSSTFVYNTVNKI 134
Query: 179 QEDDLQQLQLFTEYGRLA-------MDEIFQKP------FQTLMFLVRDWSFPYEYSYGL 225
+ + L TE L +D + + P F L++ +RD+ E L
Sbjct: 135 DQGAIDLLHNVTELTDLLKARNSPDLDRV-EDPADSASFFPDLVWTLRDFCLGLEIDGQL 193
Query: 226 QGGMAFLDKRLQVKEHQHEEIQNV---RNHIHSCFSDVTCFLLPHPG-----LQVATSPD 277
+L+ L+ K+ + +QN R I F CF+ P Q+ T PD
Sbjct: 194 VTPDEYLENSLRPKQGSDQRVQNFNLPRLCIQKFFPKKKCFIFDLPAHQKKLAQLETLPD 253
Query: 278 FDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEI-NGSKVTCRGLLEYFKAYIKIYQGED 336
++ EF +Q+ Y+ + S M K + G V L Y+ D
Sbjct: 254 -----DELEPEFVQQVTEFCSYIFSHS--MTKTLPGGIMVNGSRLKNLVLTYVNAISSGD 306
Query: 337 LPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDILEE---KHCEFKQL 393
LP ++ + A A+ N AA A Y M G+K L + L+E H ++
Sbjct: 307 LPCIENAVLALAQRENSAAVQKAIAHYDQQM-----GQKVQLPMETLQELLDLHRTSERE 361
Query: 394 ALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHN 432
A++ F K KD +Q+ELE + + CK N
Sbjct: 362 AIEVFMKN---SFKDVDQSFQKELETLLDAKQNDICKRN 397
>gi|16418425 guanylate-binding protein 5 [Homo sapiens]
Length = 586
Score = 83.2 bits (204), Expect = 6e-16
Identities = 104/399 (26%), Positives = 162/399 (40%), Gaps = 65/399 (16%)
Query: 60 VVVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGI 119
VVVV++ G +R GKS++++ K +G + GFS T GI
Sbjct: 38 VVVVAIVGLYRTGKSYLMN---------KLAGKNK----------GFSVASTVQSHTKGI 78
Query: 120 QIWSEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 178
IW V P +VL+DT+G D ++ K+ IFAL+ + SS +YN I
Sbjct: 79 WIW----CVPHPNWPNHTLVLLDTEGLGDVEKADNKNDIQIFALALLLSSTFVYNTVNKI 134
Query: 179 QEDDLQQLQLFTEYGRLA-------MDEIFQKP------FQTLMFLVRDWSFPYEYSYGL 225
+ + L TE L +D + + P F L++ +RD+ E L
Sbjct: 135 DQGAIDLLHNVTELTDLLKARNSPDLDRV-EDPADSASFFPDLVWTLRDFCLGLEIDGQL 193
Query: 226 QGGMAFLDKRLQVKEHQHEEIQNV---RNHIHSCFSDVTCFLLPHPG-----LQVATSPD 277
+L+ L+ K+ + +QN R I F CF+ P Q+ T PD
Sbjct: 194 VTPDEYLENSLRPKQGSDQRVQNFNLPRLCIQKFFPKKKCFIFDLPAHQKKLAQLETLPD 253
Query: 278 FDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEI-NGSKVTCRGLLEYFKAYIKIYQGED 336
++ EF +Q+ Y+ + S M K + G V L Y+ D
Sbjct: 254 -----DELEPEFVQQVTEFCSYIFSHS--MTKTLPGGIMVNGSRLKNLVLTYVNAISSGD 306
Query: 337 LPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDILEE---KHCEFKQL 393
LP ++ + A A+ N AA A Y M G+K L + L+E H ++
Sbjct: 307 LPCIENAVLALAQRENSAAVQKAIAHYDQQM-----GQKVQLPMETLQELLDLHRTSERE 361
Query: 394 ALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHN 432
A++ F K KD +Q+ELE + + CK N
Sbjct: 362 AIEVFMKN---SFKDVDQSFQKELETLLDAKQNDICKRN 397
>gi|166706903 guanylate binding protein 1, interferon-inducible,
67kDa [Homo sapiens]
Length = 592
Score = 75.5 bits (184), Expect = 1e-13
Identities = 98/394 (24%), Positives = 168/394 (42%), Gaps = 53/394 (13%)
Query: 60 VVVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGI 119
+VVV++ G +R GKS++++ K +G GFS T GI
Sbjct: 38 MVVVAIVGLYRTGKSYLMN---------KLAGKKK----------GFSLGSTVQSHTKGI 78
Query: 120 QIWSEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 178
+W V +KPG +VL+DT+G D + ++ + IFAL+ + SS +YN I
Sbjct: 79 WMWC-VPHPKKPGH---ILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTI 134
Query: 179 QEDDLQQLQLFTEY-----GRLAMDE---------IFQKPFQTLMFLVRDWSFPYEYSYG 224
+ + QL TE + + DE F F ++ +RD+S E
Sbjct: 135 NQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQ 194
Query: 225 LQGGMAFLDKRLQVKE--HQHEEIQNV-RNHIHSCFSDVTCFLLPHPGLQVATSPDFDGK 281
+L L++K+ Q +E N+ R I F CF+ P + + +
Sbjct: 195 PLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQ 254
Query: 282 LKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPK 341
+++ EF +Q+ Y+ + SK G +V L Y+ DLP +
Sbjct: 255 DEELDPEFVQQVADFCSYIFSNSKTKTLS-GGIQVNGPRLESLVLTYVNAISSGDLPCME 313
Query: 342 SMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDILEE---KHCEFKQLALDHF 398
+ + A A+ N AA A Y M G+K L + L+E H + ++ A++ F
Sbjct: 314 NAVLALAQIENSAAVQKAIAHYEQQM-----GQKVQLPTETLQELLDLHRDSEREAIEVF 368
Query: 399 KKTKKMGGKDFSFRYQQELEEEIKELYENFCKHN 432
++ KD +Q+EL ++++ ++FCK N
Sbjct: 369 IRS---SFKDVDHLFQKELAAQLEKKRDDFCKQN 399
>gi|112382372 guanylate binding protein 3 [Homo sapiens]
Length = 595
Score = 71.2 bits (173), Expect = 2e-12
Identities = 92/389 (23%), Positives = 158/389 (40%), Gaps = 45/389 (11%)
Query: 60 VVVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGI 119
VVVV++ G +R GKS++++ K +G + GFS T GI
Sbjct: 38 VVVVAIVGLYRTGKSYLMN---------KLAGKNK----------GFSLGSTVKSHTKGI 78
Query: 120 QIWSEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 178
+W V P + +VL+DT+G D + ++ + IF L+ + SS +YN I
Sbjct: 79 WMW----CVPHPKKPEHTLVLLDTEGLGDVKKGDNQNDSWIFTLAVLLSSTLVYNSMGTI 134
Query: 179 QEDDLQQLQLFTEY-----GRLAMDE-------IFQKPFQTLMFLVRDWSFPYEYSYGLQ 226
+ + QL TE + + DE F F ++ +RD+S E
Sbjct: 135 NQQAMDQLYYVTELTHRIRSKSSPDENENEDSADFVSFFPDFVWTLRDFSLDLEADGQPL 194
Query: 227 GGMAFLDKRLQVKEHQHEEIQNV---RNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLK 283
+L+ L++ + ++ +N R I F CF+ P + + + +
Sbjct: 195 TPDEYLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKKCFVFDLPIHRRKLAQLEKLQDE 254
Query: 284 DIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSM 343
++ EF +Q+ Y+ + SK G KV L YI DLP ++
Sbjct: 255 ELDPEFVQQVADFCSYIFSNSKTKTLS-GGIKVNGPRLESLVLTYINAISRGDLPCMENA 313
Query: 344 LQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLALDHFKKTKK 403
+ A A+ N AA A Y M G+K L + L+E + + + K
Sbjct: 314 VLALAQIENSAAVQKAIAHYDQQM-----GQKVQLPAETLQELLDLHRVSEREATEVYMK 368
Query: 404 MGGKDFSFRYQQELEEEIKELYENFCKHN 432
KD +Q++L ++ + ++FCK N
Sbjct: 369 NSFKDVDHLFQKKLAAQLDKKRDDFCKQN 397
>gi|31377634 guanylate binding protein 4 [Homo sapiens]
Length = 640
Score = 69.3 bits (168), Expect = 8e-12
Identities = 102/427 (23%), Positives = 172/427 (40%), Gaps = 62/427 (14%)
Query: 29 VVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYLYSQK 88
+ LV+ + ++ KAL + D I VVVV++ G +R GKS++++ +
Sbjct: 26 ICLVENQEEQLTVNSKALEIL---DKISQ-PVVVVAIVGLYRTGKSYLMNRL-------- 73
Query: 89 ESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAVVLMDTQGAFD 148
+G N GF ET GI +W V + KP +VL+DT+G D
Sbjct: 74 -AGKRN----------GFPLGSTVQSETKGIWMWC-VPHLSKPNH---TLVLLDTEGLGD 118
Query: 149 -SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKP--- 204
+S K+ + IFAL+ + SS +YN I L+QL TE L + +P
Sbjct: 119 VEKSNPKNDSWIFALAVLLSSSFVYNSVSTINHQALEQLHYVTELAELIRAKSCPRPDEA 178
Query: 205 ---------FQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQN---VRNH 252
F ++ VRD++ + +L+ L++ ++ +IQN R
Sbjct: 179 EDSSEFASFFPDFIWTVRDFTLELKLDGNPITEDEYLENALKLIPGKNPKIQNSNMPREC 238
Query: 253 IHSCFSDVTCFLLPHP--GLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKE 310
I F CF+ P Q D + +++ F Q Y+ +K
Sbjct: 239 IRHFFRKRKCFVFDRPTNDKQYLNHMD-EVPEENLERHFLMQSDNFCSYIFTHAKTKTLR 297
Query: 311 INGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEV 370
G VT + L Y+ +P ++ + A A+ N AA A D Y M
Sbjct: 298 -EGIIVTGKRLGTLVVTYVDAINSGAVPCLENAVTALAQLENPAAVQRAADHYSQQM--- 353
Query: 371 CGGEKPYLSPDILEE-----KHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEIKELY 425
++ L D L+E CE + +A+ + KD + +Q++L + I++
Sbjct: 354 --AQQLRLPTDTLQELLDVHAACEREAIAV-----FMEHSFKDENHEFQKKLVDTIEKKK 406
Query: 426 ENFCKHN 432
+F N
Sbjct: 407 GDFVLQN 413
>gi|148234215 guanylate binding protein 4-like [Homo sapiens]
Length = 638
Score = 66.6 bits (161), Expect = 5e-11
Identities = 99/432 (22%), Positives = 165/432 (38%), Gaps = 52/432 (12%)
Query: 18 AMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFIL 77
A E PGPV + K + + S + Q VVVV++ G +R GKS+++
Sbjct: 2 ASEIHMPGPVCLTENTKGHLVVNSEALEILSAITQP------VVVVAIVGLYRTGKSYLM 55
Query: 78 DFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVA 137
+ K +G + GF ET GI +W V P
Sbjct: 56 N---------KLAGKNK----------GFPLGCTVKSETKGIWMWC----VPHPSKPNHT 92
Query: 138 VVLMDTQGAFDSQ-STVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLA 196
++L+DT+G D + S K + IFAL+ + SS +YN I L+QL TE L
Sbjct: 93 LILLDTEGLGDMEKSDPKSDSWIFALAVLLSSSFVYNSMGTINHQALEQLHYVTELTELI 152
Query: 197 M-------DEI-----FQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHE 244
DE+ F F ++ VRD++ + +L+ L++ ++
Sbjct: 153 RAKSCPRPDEVEDSSEFVSFFPDFIWTVRDFTLELKLDGHPITEDEYLENALKLISGKNP 212
Query: 245 EIQN---VRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLKD-IAGEFKEQLQALIPYV 300
+IQN R I F CF+ P + +D + F+ Q + Y+
Sbjct: 213 QIQNSNKPREWIRHFFPKQKCFVFDRPINDKKLLLHVEEVREDQLDSNFQMQSENFCSYI 272
Query: 301 LNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAK 360
+K G VT L + Y+ P ++ + A+ N AA A
Sbjct: 273 FTHAKTKTLR-EGILVTGNRLGMLVETYLDAINSGATPCLENAMAVLAQCENSAAVQRAA 331
Query: 361 DIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEE 420
+ Y M + L + CE + +A+ + KD S +Q++L +
Sbjct: 332 NHYSQQMAQQVRFPTDTLQELLDVHAVCEREAIAV-----FMEYSFKDKSQEFQKKLVDT 386
Query: 421 IKELYENFCKHN 432
+++ E+F N
Sbjct: 387 MEKKKEDFVLQN 398
>gi|157671915 guanylate binding protein family, member 6 [Homo
sapiens]
Length = 633
Score = 65.9 bits (159), Expect = 9e-11
Identities = 86/384 (22%), Positives = 150/384 (39%), Gaps = 50/384 (13%)
Query: 19 MESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILD 78
MES V LV+ + ++++A I + + I VVVV++ G +R GKS++++
Sbjct: 1 MESGPKMLAPVCLVENNNEQLLVNQQA---IQILEKISQ-PVVVVAIVGLYRTGKSYLMN 56
Query: 79 FMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAV 138
+ +G ++ GF ET GI +W V P +
Sbjct: 57 HL---------AGQNH----------GFPLGSTVQSETKGIWMWC----VPHPSKPNHTL 93
Query: 139 VLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAM 197
VL+DT+G D + K+ + IFAL+ + S +YN I L+QL TE L
Sbjct: 94 VLLDTEGLGDVEKGDPKNDSWIFALAVLLCSTFVYNSMSTINHQALEQLHYVTELTELIK 153
Query: 198 DEIFQKP------------FQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEE 245
+ +P F ++ VRD++ + + +L+ L++ + +
Sbjct: 154 AKSSPRPDGVEDSTEFVSFFPDFLWTVRDFTLELKLNGHPITEDEYLENALKLIQGNNPR 213
Query: 246 IQN---VRNHIHSCFSDVTCFLLPHPGLQVATSPDFDG-KLKDIAGEFKEQLQALIPYVL 301
+Q R I F CF+ P + + K + +F+EQ Y+
Sbjct: 214 VQTSNFPRECIRRFFPKRKCFVFDRPTNDKDLLANIEKVSEKQLDPKFQEQTNIFCSYIF 273
Query: 302 NPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKD 361
++ G VT L Y++ +P ++ + A+ N AA A D
Sbjct: 274 THARTKTLR-EGITVTGNRLGTLAVTYVEAINSGAVPCLENAVITLAQRENSAAVQRAAD 332
Query: 362 IYYNNMEEVCGGEKPYLSPDILEE 385
Y M ++ L D L+E
Sbjct: 333 YYSQQM-----AQRVKLPTDTLQE 351
>gi|51479143 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 399 KKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 442
K+ G D S YQQELE E+ +L + F N N F TF+
Sbjct: 53 KRQTSGGPVDASSEYQQELERELFKLKQMF--GNADMNTFPTFK 94
>gi|51479141 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform b precursor [Homo sapiens]
Length = 116
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 399 KKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 442
K+ G D S YQQELE E+ +L + F N N F TF+
Sbjct: 61 KRQTSGGPVDASSEYQQELERELFKLKQMF--GNADMNTFPTFK 102
>gi|51479139 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 399 KKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 442
K+ G D S YQQELE E+ +L + F N N F TF+
Sbjct: 53 KRQTSGGPVDASSEYQQELERELFKLKQMF--GNADMNTFPTFK 94
>gi|51479137 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 399 KKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 442
K+ G D S YQQELE E+ +L + F N N F TF+
Sbjct: 53 KRQTSGGPVDASSEYQQELERELFKLKQMF--GNADMNTFPTFK 94
>gi|18644883 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F6 isoform a precursor [Homo sapiens]
Length = 108
Score = 30.8 bits (68), Expect = 3.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 399 KKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFR 442
K+ G D S YQQELE E+ +L + F N N F TF+
Sbjct: 53 KRQTSGGPVDASSEYQQELERELFKLKQMF--GNADMNTFPTFK 94
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 30.4 bits (67), Expect = 4.3
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 25/126 (19%)
Query: 305 KLMEKEINGSKVTCRG-LLEYFKAYIKIY-----------QGEDLPHPKSMLQATAEA-- 350
+ +E+ NG VT RG L + K+ +K+ QG++L S +A
Sbjct: 1172 RAVEEIRNG--VTKRGETLSWLKSRLKVLTEVSSENEAQKQGDELAKLSSSFKALVTLLS 1229
Query: 351 ------NNLAAAASAKDIYYNNMEEVCGGEKPYL--SPDILEEKHC-EFKQLALDHFKKT 401
+N K+I N++EE+ G K + IL+ ++ E +QL L H +KT
Sbjct: 1230 EVEKMLSNFGDCVQYKEIVKNSLEELISGSKEVQEQAEKILDTENLFEAQQLLLHHQQKT 1289
Query: 402 KKMGGK 407
K++ K
Sbjct: 1290 KRISAK 1295
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 30.4 bits (67), Expect = 4.3
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 25/126 (19%)
Query: 305 KLMEKEINGSKVTCRG-LLEYFKAYIKIY-----------QGEDLPHPKSMLQATAEA-- 350
+ +E+ NG VT RG L + K+ +K+ QG++L S +A
Sbjct: 1165 RAVEEIRNG--VTKRGETLSWLKSRLKVLTEVSSENEAQKQGDELAKLSSSFKALVTLLS 1222
Query: 351 ------NNLAAAASAKDIYYNNMEEVCGGEKPYL--SPDILEEKHC-EFKQLALDHFKKT 401
+N K+I N++EE+ G K + IL+ ++ E +QL L H +KT
Sbjct: 1223 EVEKMLSNFGDCVQYKEIVKNSLEELISGSKEVQEQAEKILDTENLFEAQQLLLHHQQKT 1282
Query: 402 KKMGGK 407
K++ K
Sbjct: 1283 KRISAK 1288
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 30.4 bits (67), Expect = 4.3
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 117 TGIQIWSEVFTVEKPGGKKVAVVLMD-----------TQGAFDSQSTVKDCATIFALSTM 165
T +Q +++F +PG KKVA+V+ D T+ ++ T + I +
Sbjct: 879 TALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKN 938
Query: 166 TSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTL 208
+ +I++ N+ D + + F ++ L D + QK FQ +
Sbjct: 939 DPNFEIFHKEMNLIATDPEHVYQFDDFFTL-QDTLKQKLFQKI 980
Score = 30.0 bits (66), Expect = 5.6
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 9 AAASRGADDAMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSV 65
A A + A+D E ++PG +V LV D + D++ L ++ ++++ V+ V
Sbjct: 878 ATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGV 934
>gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]
Length = 625
Score = 30.4 bits (67), Expect = 4.3
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 223 YGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGK 281
+ + G + ++RL+ E + EE+Q+VR+ + + C L L+ DG+
Sbjct: 463 HSMDGAKGWFERRLKEAEGKEEELQDVRDQLEQAQEERDCHLKTISSLKQEVKDTVDGQ 521
>gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a
[Homo sapiens]
Length = 1701
Score = 30.0 bits (66), Expect = 5.6
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 277 DFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGL---LEYFKAYIKIYQ 333
D D K+K +A +LQ + K +E +I + L + Y+ Q
Sbjct: 648 DMDSKMKKMA-----ELQLSVVSDPKNRKAIENQIQQWEQNLEKFHMDLFRMRCYLASLQ 702
Query: 334 GEDLPHPKSMLQATAEANNLA 354
G +LP+PKS+L A + + LA
Sbjct: 703 GGELPNPKSLLAAASRPSKLA 723
>gi|172072684 PR domain containing 1, with ZNF domain isoform 1
[Homo sapiens]
Length = 825
Score = 29.6 bits (65), Expect = 7.3
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 232 LDKRLQVKEHQHEEIQNVRNHIHSCFSDV----TCFLLPHPGL 270
L KRL +E H+ Q +N+IH C V C P PGL
Sbjct: 676 LHKRLHTRERPHKCSQCHKNYIHLCSLKVHLKGNCAAAPAPGL 718
>gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [Homo
sapiens]
Length = 691
Score = 29.6 bits (65), Expect = 7.3
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 232 LDKRLQVKEHQHEEIQNVRNHIHSCFSDV----TCFLLPHPGL 270
L KRL +E H+ Q +N+IH C V C P PGL
Sbjct: 542 LHKRLHTRERPHKCSQCHKNYIHLCSLKVHLKGNCAAAPAPGL 584
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 29.3 bits (64), Expect = 9.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 SPQRVAAAASRGADDAMESSKPGPVQVVLVQKDQ 36
SPQR A +A GA + E ++PG ++ L Q +Q
Sbjct: 63 SPQRPAVSAPVGASEIAEETRPGQRELQLQQLEQ 96
>gi|120444924 ATP/GTP binding protein-like 1 [Homo sapiens]
Length = 1066
Score = 29.3 bits (64), Expect = 9.6
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 279 DGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLP 338
DGK++D E + P + P E+E+ +V C L F+ ++ G+DL
Sbjct: 273 DGKVEDDDLETDVNKLSSKPGLDRP----EEELMQYEVMCLELSYSFEE-LQSKLGDDLN 327
Query: 339 HPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPY 377
K+ A +++ AAAS+K Y+ + CG E+ Y
Sbjct: 328 SEKTQY---ANHHHIPAAASSKQHCYSKDQSSCGQEREY 363
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,343,394
Number of Sequences: 37866
Number of extensions: 907383
Number of successful extensions: 2406
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2362
Number of HSP's gapped (non-prelim): 34
length of query: 541
length of database: 18,247,518
effective HSP length: 107
effective length of query: 434
effective length of database: 14,195,856
effective search space: 6161001504
effective search space used: 6161001504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.