Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 45580742
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45580742 dehydrodolichyl diphosphate synthase isoform a
[Homo sapiens]
(334 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45580742 dehydrodolichyl diphosphate synthase isoform a [Homo... 675 0.0
gi|45580738 dehydrodolichyl diphosphate synthase isoform b [Homo... 669 0.0
gi|148746195 trichohyalin [Homo sapiens] 37 0.032
gi|20270243 nuclear undecaprenyl pyrophosphate synthase 1 homolo... 35 0.12
gi|41152097 DNA segment on chromosome X and Y (unique) 155 expre... 34 0.16
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens] 33 0.47
gi|31542673 chromatin modifying protein 6 [Homo sapiens] 32 1.0
gi|46397396 nasal embryonic LHRH factor isoform b [Homo sapiens] 31 1.4
gi|102467242 inner centromere protein antigens 135/155kDa isofor... 31 1.4
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 31 1.8
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 31 1.8
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 31 1.8
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 31 1.8
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 31 1.8
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 31 1.8
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 31 1.8
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 31 1.8
gi|195972909 nasal embryonic LHRH factor isoform a [Homo sapiens] 30 2.3
gi|102467235 inner centromere protein antigens 135/155kDa isofor... 30 2.3
gi|221554543 suppressor of cancer cell invasion isoform 2 [Homo ... 30 3.0
gi|116256473 suppressor of cancer cell invasion isoform 1 [Homo ... 30 3.0
gi|56549694 enabled homolog isoform a [Homo sapiens] 30 3.9
gi|39930375 enabled homolog isoform b [Homo sapiens] 30 3.9
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 30 3.9
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 30 3.9
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 30 3.9
gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa... 30 3.9
gi|45439327 periplakin [Homo sapiens] 29 5.2
gi|40254464 leptin receptor isoform 1 [Homo sapiens] 29 6.7
gi|122937416 hypothetical protein LOC85452 [Homo sapiens] 29 6.7
>gi|45580742 dehydrodolichyl diphosphate synthase isoform a [Homo
sapiens]
Length = 334
Score = 675 bits (1742), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MSWIKEGELSLWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQVERQEGHSQGFNKLAE 60
MSWIKEGELSLWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQVERQEGHSQGFNKLAE
Sbjct: 1 MSWIKEGELSLWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQVERQEGHSQGFNKLAE 60
Query: 61 TLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRV 120
TLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRV
Sbjct: 61 TLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRV 120
Query: 121 LGDLHLLPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLDP 180
LGDLHLLPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLDP
Sbjct: 121 LGDLHLLPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLDP 180
Query: 181 SDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNL 240
SDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNL
Sbjct: 181 SDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNL 240
Query: 241 FEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRL 300
FEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRL
Sbjct: 241 FEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRL 300
Query: 301 HKLSARREERVQGFLQALELKRADWLARLGTASA 334
HKLSARREERVQGFLQALELKRADWLARLGTASA
Sbjct: 301 HKLSARREERVQGFLQALELKRADWLARLGTASA 334
>gi|45580738 dehydrodolichyl diphosphate synthase isoform b [Homo
sapiens]
Length = 333
Score = 669 bits (1725), Expect = 0.0
Identities = 333/334 (99%), Positives = 333/334 (99%), Gaps = 1/334 (0%)
Query: 1 MSWIKEGELSLWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQVERQEGHSQGFNKLAE 60
MSWIKEGELSLWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQVERQEGHSQGFNKLAE
Sbjct: 1 MSWIKEGELSLWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQVERQEGHSQGFNKLAE 60
Query: 61 TLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRV 120
TLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRV
Sbjct: 61 TLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRV 120
Query: 121 LGDLHLLPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLDP 180
LGDLHLLPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLDP
Sbjct: 121 LGDLHLLPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLDP 180
Query: 181 SDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNL 240
SDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNL
Sbjct: 181 SDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNL 240
Query: 241 FEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRL 300
FEAILQFQMNHSVL QKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRL
Sbjct: 241 FEAILQFQMNHSVL-QKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRL 299
Query: 301 HKLSARREERVQGFLQALELKRADWLARLGTASA 334
HKLSARREERVQGFLQALELKRADWLARLGTASA
Sbjct: 300 HKLSARREERVQGFLQALELKRADWLARLGTASA 333
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 36.6 bits (83), Expect = 0.032
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 255 QQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSARREERVQGF 314
+Q+ R EER+ QQL R+Q EQ LR Q + QLRR + RRE++++
Sbjct: 361 EQQLRREQEEERREQQLRREQQLRREQQLRREQQLRREQQLRREQ----QLRREQQLR-- 414
Query: 315 LQALELKRADWLAR 328
+ +L+R L R
Sbjct: 415 -REQQLRREQQLRR 427
Score = 35.8 bits (81), Expect = 0.055
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 266 RKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSARR--EERVQGFLQALELKRA 323
R+ QQL R+Q EQ LR Q + QLRR + + ++ +ER + L+ + +R
Sbjct: 396 RREQQLRREQQLRREQQLRREQQLRREQQLRREQEEERHEQKHEQERREQRLKREQEERR 455
Query: 324 DWLAR 328
DWL R
Sbjct: 456 DWLKR 460
Score = 35.0 bits (79), Expect = 0.094
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 255 QQKARDMYAEERKRQQLERDQATVTE-QLLREGLQASGDAQLRRTRLHKLSARREERVQG 313
+Q+ R EER+ QQL R+Q E QL RE + + QLRR + + ++ R Q
Sbjct: 323 EQQERREQQEERREQQLRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRREQQ 382
Query: 314 FLQALELKRADWLAR 328
+ +L+R L R
Sbjct: 383 LRREQQLRREQQLRR 397
Score = 30.4 bits (67), Expect = 2.3
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 246 QFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSA 305
Q + +L+++ +ER+ Q+L+R+Q +QLL+ + R +L
Sbjct: 542 QEERREQLLKREEEKRLEQERREQRLKREQEERRDQLLK---------REEERRQQRLKR 592
Query: 306 RREERVQGFLQALELKRAD 324
+EER++ L+ E++R +
Sbjct: 593 EQEERLEQRLKREEVERLE 611
Score = 30.0 bits (66), Expect = 3.0
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 255 QQKARDMYA---EERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSARREERV 311
Q++ RD EER++Q+L+R+Q EQ L+ + + RR + K EER
Sbjct: 571 QEERRDQLLKREEERRQQRLKREQEERLEQRLKREEVERLEQEERREQRLKREEPEEERR 630
Query: 312 QGFLQALE 319
Q L++ E
Sbjct: 631 QQLLKSEE 638
Score = 29.6 bits (65), Expect = 3.9
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 233 PEYTFWNLFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLL---REGLQA 289
PE F + + + Q LQ++ + E ++++ +RD+ E+ L RE Q
Sbjct: 1513 PERKFLEEEQQLHRQQRQRKFLQEEQQLRRQERGQQRRQDRDRKFREEEQLRQEREEQQL 1572
Query: 290 SGDAQLRRTRLHKLSARREERVQGFLQ 316
S + R+ RL + RR+E+ + F++
Sbjct: 1573 SRQERDRKFRLEEQKVRRQEQERKFME 1599
Score = 29.3 bits (64), Expect = 5.2
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 255 QQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSARREERVQGF 314
Q++ + R QQL R+Q EQLL+ + + + R RL + +EER
Sbjct: 522 QEEEERLQQRLRSEQQLRREQEERREQLLKREEEKRLEQERREQRLKR---EQEERRDQL 578
Query: 315 LQALELKRADWLAR 328
L+ E +R L R
Sbjct: 579 LKREEERRQQRLKR 592
Score = 28.5 bits (62), Expect = 8.8
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 255 QQKARDMYAEERKRQQLERDQATV-TEQLLREGLQASGDAQLRR-----TRLHKLSARRE 308
Q++ R EER+ QQ R+Q EQ LR + + QLRR R +L +E
Sbjct: 310 QEEERREQQEERREQQERREQQEERREQQLRREQEERREQQLRREQEEERREQQLRREQE 369
Query: 309 E--RVQGFLQALELKRADWLAR 328
E R Q + +L+R L R
Sbjct: 370 EERREQQLRREQQLRREQQLRR 391
Score = 28.5 bits (62), Expect = 8.8
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 264 EERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSARREERVQGFLQALELKRA 323
+ER+ QQL R+Q EQ L+ + Q R+ +L +EER + L+ E KR
Sbjct: 500 QERREQQLRREQEERREQRLKRQEEEERLQQRLRSE-QQLRREQEERREQLLKREEEKRL 558
Query: 324 D 324
+
Sbjct: 559 E 559
Score = 28.5 bits (62), Expect = 8.8
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 254 LQQKARDMYAEE---RKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSARREER 310
+QQ+ + EE R+RQ+LER Q E+L +E Q + Q +R + + R EE
Sbjct: 1146 VQQEEEQLLREEPEKRRRQELER-QYREEEELQQEEEQLLREEQEKRRQERERQYREEEE 1204
Query: 311 VQ 312
+Q
Sbjct: 1205 LQ 1206
Score = 28.5 bits (62), Expect = 8.8
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 255 QQKARDMYAEERKRQQLERDQAT---------VTEQLLREG--LQASGDAQLRRTRLHKL 303
Q++ R EE + ++ ER+Q EQLL+EG Q + R+ R +
Sbjct: 1639 QERDRKFLEEEPQLRRQEREQQLRHDRDRKFREEEQLLQEGEEQQLRRQERDRKFREEEQ 1698
Query: 304 SARREERVQGFLQALELKRADWLAR 328
RR+ER + FLQ + R L R
Sbjct: 1699 QLRRQERERKFLQEEQQLRRQELER 1723
>gi|20270243 nuclear undecaprenyl pyrophosphate synthase 1 homolog
[Homo sapiens]
Length = 293
Score = 34.7 bits (78), Expect = 0.12
Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 31/180 (17%)
Query: 55 FNKLAETLRWCLNLGILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKH 114
F+ +A + WC+ +GI ++VY FKR+ S RLM+E K Q+
Sbjct: 114 FSDIASLVVWCMAVGISYISVYDHQ-GIFKRNNS--------------RLMDEILKQQQE 158
Query: 115 GVCIRVLGDLHLLPLDLQELIAQAVQATKNYNK---CFL--NVCFAYTSRHEISNAVREM 169
LL LD + + + ++ C L V + +I A ++
Sbjct: 159 -----------LLGLDCSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIVRAAQDF 207
Query: 170 AWGVEQGLLDPSDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQP 229
V Q P+D+ L L +N P PD++++ FL W + +V P
Sbjct: 208 CQLVAQKQKRPTDLDVDTLASLLSSNGCPDPDLVLKFGPVDSTLGFLPWHIRLTEIVSLP 267
>gi|41152097 DNA segment on chromosome X and Y (unique) 155
expressed sequence isoform 1 [Homo sapiens]
Length = 695
Score = 34.3 bits (77), Expect = 0.16
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 255 QQKARDMYAEERKR---------QQLERDQATVTEQLLREGLQASGDAQLRRT--RLHKL 303
+QK R+ AEER+R ++LER++ E+ LR+ Q D +LRR +L KL
Sbjct: 287 EQKRREKEAEERQRAEERKQKELEELERERKR--EEKLRKREQKQRDRELRRNQKKLEKL 344
Query: 304 SARREERVQGFLQALELK 321
A ++++Q ++ E K
Sbjct: 345 QAEEQKQLQEKIKLEERK 362
>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
Length = 1080
Score = 32.7 bits (73), Expect = 0.47
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 254 LQQKARDMY---AEERKR--QQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSARRE 308
LQQ+ + +Y AEER+R QQ R +A + E LR+ L+ S A R R R E
Sbjct: 786 LQQQRQRLYSEVAEERERLGQQAARQRAELEE--LRQQLEESSSALTRALRAEFEKGREE 843
Query: 309 E------RVQGFLQALELKRADWLA 327
+ + Q LEL+R W A
Sbjct: 844 QERRHQMELNTLKQQLELERQAWEA 868
>gi|31542673 chromatin modifying protein 6 [Homo sapiens]
Length = 201
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 242 EAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLH 301
+AILQ + L+Q ++R QQLER++A + QLLR+G + L++ R
Sbjct: 18 KAILQLKQQRDKLRQY------QKRIAQQLERERA-LARQLLRDGRKERAKLLLKKKRYQ 70
Query: 302 KLSARREERVQGFLQAL 318
+ R E L+A+
Sbjct: 71 EQLLDRTENQISSLEAM 87
>gi|46397396 nasal embryonic LHRH factor isoform b [Homo sapiens]
Length = 528
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 238 WNLFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRR 297
W E + FQ + +Q R YAE RKR++ E D A+V ++ R+ L+ G RR
Sbjct: 217 WFPKENLFSFQTATTTMQAVFRG-YAE-RKRRKRENDSASVIQRNFRKHLRMVGS---RR 271
Query: 298 TRLHKLSARRE 308
+ + RRE
Sbjct: 272 VKAQTFAERRE 282
>gi|102467242 inner centromere protein antigens 135/155kDa isoform 2
[Homo sapiens]
Length = 914
Score = 31.2 bits (69), Expect = 1.4
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 261 MYAEERKRQQLER-DQATVTEQLLREGLQASGDAQLRRTRLHKLSARREERVQGFLQALE 319
M +E++RQ+LE + EQL R+ ++ +R RL ++ +REER++ LQA E
Sbjct: 528 MDPKEKERQRLENLRRKEEAEQLRRQKVEED-----KRRRLEEVKLKREERLRKVLQARE 582
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 240 LFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTR 299
L EAI + + LQQ+A+ + + + Q ++++Q Q L++ + D+ L+R R
Sbjct: 2448 LREAIAELEREKEKLQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRER 2507
Query: 300 -LHKLSARREERVQ 312
+ + A+ E+ Q
Sbjct: 2508 FIEQEKAKLEQLFQ 2521
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 240 LFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTR 299
L EAI + + LQQ+A+ + + + Q ++++Q Q L++ + D+ L+R R
Sbjct: 2452 LREAIAELEREKEKLQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRER 2511
Query: 300 -LHKLSARREERVQ 312
+ + A+ E+ Q
Sbjct: 2512 FIEQEKAKLEQLFQ 2525
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 240 LFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTR 299
L EAI + + LQQ+A+ + + + Q ++++Q Q L++ + D+ L+R R
Sbjct: 2448 LREAIAELEREKEKLQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRER 2507
Query: 300 -LHKLSARREERVQ 312
+ + A+ E+ Q
Sbjct: 2508 FIEQEKAKLEQLFQ 2521
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 240 LFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTR 299
L EAI + + LQQ+A+ + + + Q ++++Q Q L++ + D+ L+R R
Sbjct: 2416 LREAIAELEREKEKLQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRER 2475
Query: 300 -LHKLSARREERVQ 312
+ + A+ E+ Q
Sbjct: 2476 FIEQEKAKLEQLFQ 2489
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 240 LFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTR 299
L EAI + + LQQ+A+ + + + Q ++++Q Q L++ + D+ L+R R
Sbjct: 2585 LREAIAELEREKEKLQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRER 2644
Query: 300 -LHKLSARREERVQ 312
+ + A+ E+ Q
Sbjct: 2645 FIEQEKAKLEQLFQ 2658
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 240 LFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTR 299
L EAI + + LQQ+A+ + + + Q ++++Q Q L++ + D+ L+R R
Sbjct: 2426 LREAIAELEREKEKLQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRER 2485
Query: 300 -LHKLSARREERVQ 312
+ + A+ E+ Q
Sbjct: 2486 FIEQEKAKLEQLFQ 2499
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 240 LFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTR 299
L EAI + + LQQ+A+ + + + Q ++++Q Q L++ + D+ L+R R
Sbjct: 2434 LREAIAELEREKEKLQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRER 2493
Query: 300 -LHKLSARREERVQ 312
+ + A+ E+ Q
Sbjct: 2494 FIEQEKAKLEQLFQ 2507
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 240 LFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTR 299
L EAI + + LQQ+A+ + + + Q ++++Q Q L++ + D+ L+R R
Sbjct: 2475 LREAIAELEREKEKLQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRER 2534
Query: 300 -LHKLSARREERVQ 312
+ + A+ E+ Q
Sbjct: 2535 FIEQEKAKLEQLFQ 2548
>gi|195972909 nasal embryonic LHRH factor isoform a [Homo sapiens]
Length = 530
Score = 30.4 bits (67), Expect = 2.3
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 238 WNLFEAILQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRR 297
W E + FQ + +Q + ERKR++ E D A+V ++ R+ L+ G RR
Sbjct: 217 WFPKENLFSFQTATTTMQAISVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGS---RR 273
Query: 298 TRLHKLSARRE 308
+ + RRE
Sbjct: 274 VKAQTFAERRE 284
>gi|102467235 inner centromere protein antigens 135/155kDa isoform 1
[Homo sapiens]
Length = 918
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 265 ERKRQQLER-DQATVTEQLLREGLQASGDAQLRRTRLHKLSARREERVQGFLQALE 319
E++RQ+LE + EQL R+ ++ +R RL ++ +REER++ LQA E
Sbjct: 536 EKERQRLENLRRKEEAEQLRRQKVEED-----KRRRLEEVKLKREERLRKVLQARE 586
>gi|221554543 suppressor of cancer cell invasion isoform 2 [Homo
sapiens]
Length = 606
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 239 NLFEAILQFQMNHSV-LQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRR 297
+L +A++ N+ V + DM+ R Q LER+ + Q+ + G+Q S D RR
Sbjct: 274 SLADALIIGNCNNQVKFSELTVDMF---RMLQALEREPMNLASQMNKPGMQESADKPTRR 330
Query: 298 TRLHK 302
HK
Sbjct: 331 ENPHK 335
>gi|116256473 suppressor of cancer cell invasion isoform 1 [Homo
sapiens]
Length = 629
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 239 NLFEAILQFQMNHSV-LQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRR 297
+L +A++ N+ V + DM+ R Q LER+ + Q+ + G+Q S D RR
Sbjct: 297 SLADALIIGNCNNQVKFSELTVDMF---RMLQALEREPMNLASQMNKPGMQESADKPTRR 353
Query: 298 TRLHK 302
HK
Sbjct: 354 ENPHK 358
>gi|56549694 enabled homolog isoform a [Homo sapiens]
Length = 591
Score = 29.6 bits (65), Expect = 3.9
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 245 LQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQAS--GDAQLRRTRLHK 302
L+ Q QQ+ +++ E +R+++ER++ E+L RE L+ QL R R +
Sbjct: 140 LEIQRRQLQEQQRQKELERERLERERMERERLE-RERLERERLERERLEQEQLERERQER 198
Query: 303 LSARREERVQGFLQALELKRADWLAR 328
R ER + + L+R + L R
Sbjct: 199 ERQERLERQERLERQERLERQERLDR 224
>gi|39930375 enabled homolog isoform b [Homo sapiens]
Length = 570
Score = 29.6 bits (65), Expect = 3.9
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 245 LQFQMNHSVLQQKARDMYAEERKRQQLERDQATVTEQLLREGLQAS--GDAQLRRTRLHK 302
L+ Q QQ+ +++ E +R+++ER++ E+L RE L+ QL R R +
Sbjct: 140 LEIQRRQLQEQQRQKELERERLERERMERERLE-RERLERERLERERLEQEQLERERQER 198
Query: 303 LSARREERVQGFLQALELKRADWLAR 328
R ER + + L+R + L R
Sbjct: 199 ERQERLERQERLERQERLERQERLDR 224
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 29.6 bits (65), Expect = 3.9
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 29/113 (25%)
Query: 235 YTFWNLF---EAILQFQMNHSVLQQKARDMYAEERKRQ--------------QLERDQAT 277
+ +W LF + +LQ VLQ +A+++ + +Q QLE ++A
Sbjct: 857 WQWWRLFTKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERAR 916
Query: 278 VTEQLLREGLQASGDAQLRRTRLHKLSARREERVQGFLQALELKRADWLARLG 330
+ EQL E A A+ TR +L+AR++E LEL ++ AR+G
Sbjct: 917 LAEQLRAE---AELCAEAEETR-GRLAARKQE--------LELVVSELEARVG 957
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 29.6 bits (65), Expect = 3.9
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 29/113 (25%)
Query: 235 YTFWNLF---EAILQFQMNHSVLQQKARDMYAEERKRQ--------------QLERDQAT 277
+ +W LF + +LQ VLQ +A+++ + +Q QLE ++A
Sbjct: 849 WQWWRLFTKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERAR 908
Query: 278 VTEQLLREGLQASGDAQLRRTRLHKLSARREERVQGFLQALELKRADWLARLG 330
+ EQL E A A+ TR +L+AR++E LEL ++ AR+G
Sbjct: 909 LAEQLRAE---AELCAEAEETR-GRLAARKQE--------LELVVSELEARVG 949
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 29.6 bits (65), Expect = 3.9
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 29/113 (25%)
Query: 235 YTFWNLF---EAILQFQMNHSVLQQKARDMYAEERKRQ--------------QLERDQAT 277
+ +W LF + +LQ VLQ +A+++ + +Q QLE ++A
Sbjct: 890 WQWWRLFTKVKPLLQVTRQDEVLQARAQELQKVQELQQQSAREVGELQGRVAQLEEERAR 949
Query: 278 VTEQLLREGLQASGDAQLRRTRLHKLSARREERVQGFLQALELKRADWLARLG 330
+ EQL E A A+ TR +L+AR++E LEL ++ AR+G
Sbjct: 950 LAEQLRAE---AELCAEAEETR-GRLAARKQE--------LELVVSELEARVG 990
>gi|145312241 differentially expressed in FDCP 6 homolog [Homo
sapiens]
Length = 631
Score = 29.6 bits (65), Expect = 3.9
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 251 HSVLQQKARDMYAEERKRQQLERDQATVTEQLLR-EGLQASGDAQLRRTRLHKLSARREE 309
H L+QK R+ +R+Q ER +A E+LLR + LQ + +L+ L + + R+ E
Sbjct: 322 HKDLKQKRRE------QREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQRQAE 375
Query: 310 RV 311
R+
Sbjct: 376 RL 377
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 29.3 bits (64), Expect = 5.2
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 233 PEYTFWNLFEAILQFQMNHSVLQQKA--RDMYAEERKRQ-QLERDQATVTEQLLRE 285
P+ + + ILQFQ + ++ A R +EE+K+Q LER++A+ EQ+ R+
Sbjct: 1284 PQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIARK 1339
>gi|40254464 leptin receptor isoform 1 [Homo sapiens]
Length = 1165
Score = 28.9 bits (63), Expect = 6.7
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 172 GVEQGLLDPSDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVL 231
G EQGL++ S + KC + SP D +S E+ F + H ++
Sbjct: 999 GEEQGLINSS------VTKCFSSKNSPLKDSFSNSSWEIEAQAFFILSDQH-----PNII 1047
Query: 232 WPEYTFWNLFEAILQFQMNHSVLQQKARDMY 262
P TF + +L+ + N + +Y
Sbjct: 1048 SPHLTFSEGLDELLKLEGNFPEENNDKKSIY 1078
>gi|122937416 hypothetical protein LOC85452 [Homo sapiens]
Length = 762
Score = 28.9 bits (63), Expect = 6.7
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 254 LQQKARDMYAEERKRQQLERDQATVTEQLLREGLQASGDAQLRRTRLHKLSARREERVQG 313
LQ +R ++AE ERD + TE +L+E +++ RL E V+
Sbjct: 138 LQAVSRRLFAELEN----ERDLQSRTEAVLKESENTMWHIEIQEGRLEAFRTADREEVEA 193
Query: 314 FLQALELKRADWLAR 328
+ L+++ A+ L R
Sbjct: 194 TGRRLQVRAAEQLCR 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,923,766
Number of Sequences: 37866
Number of extensions: 491561
Number of successful extensions: 2062
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1918
Number of HSP's gapped (non-prelim): 153
length of query: 334
length of database: 18,247,518
effective HSP length: 103
effective length of query: 231
effective length of database: 14,347,320
effective search space: 3314230920
effective search space used: 3314230920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.