Guide to the Human Genome
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Name: NUS1 Sequence: fasta or formatted (293aa) NCBI GI: 20270243
Description:

nuclear undecaprenyl pyrophosphate synthase 1 homolog

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         23           3
 C cysteine            3.4         10           2
 D aspartate           6.1         18           2
 E glutamate           4.1         12           1
 F phenylalanine       3.4         10           2
 G glycine             5.5         16           2
 H histidine           4.1         12           2
 I isoleucine          3.8         11           1
 K lysine              4.1         12           1
 L leucine            13.0         38           2
 M methionine          1.7          5           1
 N asparagine          3.1          9           2
 P proline             4.8         14           2
 Q glutamine           4.1         12           3
 R arginine            8.2         24           2
 S serine              7.5         22           2
 T threonine           3.4         10           1
 V valine              7.2         21           2
 W tryptophan          2.7          8           1
 Y tyrosine            2.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear undecaprenyl pyrophosphate synthase 1 homolo... 
DHDDS                 0.017   dehydrodolichyl diphosphate synthase isoform b [Homo...
DHDDS                 0.017   dehydrodolichyl diphosphate synthase isoform a [Homo...
RGMB                  0.015   RGM domain family, member B 
GTF2E1                0.012   general transcription factor IIE, polypeptide 1, al...
GBP6                  0.007   guanylate binding protein family, member 6 
RBMS2                 0.007   RNA binding motif, single stranded interacting protei...
CBARA1                0.007   calcium binding atopy-related autoantigen 1 
MYH7                  0.007   myosin, heavy chain 7, cardiac muscle, beta 
LOC100293218          0.005   PREDICTED: similar to hCG2038990 
LPIN1                 0.005   lipin 1 
PRSS12                0.005   neurotrypsin precursor 
GPR112                0.005   G-protein coupled receptor 112 
CAMK1D                0.005   calcium/calmodulin-dependent protein kinase ID isofor...
CAMK1D                0.005   calcium/calmodulin-dependent protein kinase ID isofo...
LOC100293175          0.005   PREDICTED: hypothetical protein 
LOC100291458          0.005   PREDICTED: hypothetical protein XP_002347107 
LOC100288099          0.005   PREDICTED: hypothetical protein XP_002342970 
HAL                   0.005   histidine ammonia-lyase 
WDFY4                 0.005   WDFY family member 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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