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Search of human proteins with 13129074
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13129074 proline rich Gla (G-carboxyglutamic acid) 4
(transmembrane) [Homo sapiens]
(226 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13129074 proline rich Gla (G-carboxyglutamic acid) 4 (transme... 467 e-132
gi|4506137 proline rich Gla (G-carboxyglutamic acid) 2 [Homo sap... 110 1e-24
gi|4503645 coagulation factor VII isoform a precursor [Homo sapi... 71 7e-13
gi|10518503 coagulation factor VII isoform b precursor [Homo sap... 70 1e-12
gi|4503649 coagulation factor IX preproprotein [Homo sapiens] 68 6e-12
gi|4503625 coagulation factor X preproprotein [Homo sapiens] 68 6e-12
gi|31543811 proline rich Gla (G-carboxyglutamic acid) 3 (transme... 64 8e-11
gi|215422383 proline rich Gla (G-carboxyglutamic acid) 1 [Homo s... 63 2e-10
gi|4506135 proline rich Gla (G-carboxyglutamic acid) 1 [Homo sap... 63 2e-10
gi|4506115 protein C [Homo sapiens] 58 8e-09
gi|4506121 protein Z, vitamin K-dependent plasma glycoprotein [H... 56 3e-08
gi|192447438 protein S, alpha preproprotein [Homo sapiens] 54 1e-07
gi|4503635 coagulation factor II preproprotein [Homo sapiens] 52 5e-07
gi|4557617 growth arrest-specific 6 isoform 1 precursor [Homo sa... 45 7e-05
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 34 0.089
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 34 0.089
gi|73695473 roquin [Homo sapiens] 34 0.089
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 31 0.75
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 31 0.75
gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens] 31 0.75
gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens] 31 0.75
gi|7661916 lysosomal protein transmembrane 4 alpha [Homo sapiens] 31 0.98
gi|210147507 lipopolysaccharide-induced TNF-alpha factor isoform... 30 1.3
gi|210147505 lipopolysaccharide-induced TNF-alpha factor isoform... 30 1.3
gi|65787265 lipopolysaccharide-induced TNF-alpha factor isoform ... 30 1.3
gi|241982780 programmed cell death 6 interacting protein isoform... 30 2.2
gi|22027538 programmed cell death 6 interacting protein isoform ... 30 2.2
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch... 30 2.2
gi|21464101 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase ... 29 2.9
gi|209529739 hypothetical protein LOC100132247 [Homo sapiens] 29 2.9
>gi|13129074 proline rich Gla (G-carboxyglutamic acid) 4
(transmembrane) [Homo sapiens]
Length = 226
Score = 467 bits (1201), Expect = e-132
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEVFTSKEEANFFIHRRLLYNRFDLELF 60
MFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEVFTSKEEANFFIHRRLLYNRFDLELF
Sbjct: 1 MFTLLVLLSQLPTVTLGFPHCARGPKASKHAGEEVFTSKEEANFFIHRRLLYNRFDLELF 60
Query: 61 TPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYSAKGPTTKSDGNREKIDVMGLLTG 120
TPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYSAKGPTTKSDGNREKIDVMGLLTG
Sbjct: 61 TPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYSAKGPTTKSDGNREKIDVMGLLTG 120
Query: 121 LIAAGVFLVIFGLLGYYLCITKCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPS 180
LIAAGVFLVIFGLLGYYLCITKCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPS
Sbjct: 121 LIAAGVFLVIFGLLGYYLCITKCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPS 180
Query: 181 VEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFKKSMSLPSH 226
VEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFKKSMSLPSH
Sbjct: 181 VEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFKKSMSLPSH 226
>gi|4506137 proline rich Gla (G-carboxyglutamic acid) 2 [Homo
sapiens]
Length = 202
Score = 110 bits (274), Expect = 1e-24
Identities = 74/190 (38%), Positives = 98/190 (51%), Gaps = 27/190 (14%)
Query: 28 SKHAGEEVFTSKEEANFFI--HRRL-LYNRFDLELFTPGNLERECNEELCNYEEAREIFV 84
S+ +EVF EA F+ H R+ N +DLEL TPGNLEREC EE C++EEARE F
Sbjct: 23 SEETDQEVFLGPPEAQSFLSSHTRIPRANHWDLELLTPGNLERECLEERCSWEEAREYFE 82
Query: 85 DEDKTIAFWQEYSAKGPTTKSDGNREKIDVMGLLTGLIAAGVFLVIFGLLGYYLCITKCN 144
D T FW+ Y G G R ++DV L GL + +V+ GL ++ + +
Sbjct: 83 DNTLTERFWESYIYNG-----KGGRGRVDVASLAVGLTGGILLIVLAGLGAFWYLRWRQH 137
Query: 145 RLQHPCSSAVYERGRHTPSIIFRRPEEAALSPL-------PPSVEDAGLPSYEQAVALTR 197
R Q PC E G +P + L+PL PP GLP+YEQA+A +
Sbjct: 138 RGQQPCPQ---EAGLISPL--------SPLNPLGPPTPLPPPPPPPPGLPTYEQALAASG 186
Query: 198 KHSVSPPPPY 207
H +PPPPY
Sbjct: 187 VHD-APPPPY 195
>gi|4503645 coagulation factor VII isoform a precursor [Homo
sapiens]
Length = 466
Score = 71.2 bits (173), Expect = 7e-13
Identities = 42/100 (42%), Positives = 55/100 (55%), Gaps = 13/100 (13%)
Query: 10 QLPTVTLGFPHCARGPKASKHAGEE------------VFTSKEEANFFIHRRLLYNRFDL 57
+L + LG C +K +G E VF ++EEA+ +HRR N F L
Sbjct: 7 RLLCLLLGLQGCLAAGGVAKASGGETRDMPWKPGPHRVFVTQEEAHGVLHRRRRANAF-L 65
Query: 58 ELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQEYS 97
E PG+LEREC EE C++EEAREIF D ++T FW YS
Sbjct: 66 EELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWISYS 105
>gi|10518503 coagulation factor VII isoform b precursor [Homo
sapiens]
Length = 444
Score = 70.5 bits (171), Expect = 1e-12
Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 35 VFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQ 94
VF ++EEA+ +HRR N F LE PG+LEREC EE C++EEAREIF D ++T FW
Sbjct: 22 VFVTQEEAHGVLHRRRRANAF-LEELRPGSLERECKEEQCSFEEAREIFKDAERTKLFWI 80
Query: 95 EYS 97
YS
Sbjct: 81 SYS 83
>gi|4503649 coagulation factor IX preproprotein [Homo sapiens]
Length = 461
Score = 68.2 bits (165), Expect = 6e-12
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 35 VFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQ 94
VF E AN ++R YN LE F GNLEREC EE C++EEARE+F + ++T FW+
Sbjct: 30 VFLDHENANKILNRPKRYNSGKLEEFVQGNLERECMEEKCSFEEAREVFENTERTTEFWK 89
Query: 95 EY 96
+Y
Sbjct: 90 QY 91
>gi|4503625 coagulation factor X preproprotein [Homo sapiens]
Length = 488
Score = 68.2 bits (165), Expect = 6e-12
Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 32 GEEVFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIA 91
GE +F +E+AN + R N F LE G+LEREC EE C+YEEARE+F D DKT
Sbjct: 21 GESLFIRREQANNILARVTRANSF-LEEMKKGHLERECMEETCSYEEAREVFEDSDKTNE 79
Query: 92 FWQEY 96
FW +Y
Sbjct: 80 FWNKY 84
>gi|31543811 proline rich Gla (G-carboxyglutamic acid) 3
(transmembrane) [Homo sapiens]
Length = 231
Score = 64.3 bits (155), Expect = 8e-11
Identities = 59/201 (29%), Positives = 90/201 (44%), Gaps = 37/201 (18%)
Query: 35 VFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQ 94
VF ++A+ + R N F LE G +EREC EE+C+YEE +E+F +++KT+ FW+
Sbjct: 3 VFLEAKDAHSVLKRFPRANEF-LEELRQGTIERECMEEICSYEEVKEVFENKEKTMEFWK 61
Query: 95 -----EYSAKGPTTKSDGNREKIDVMGLLTGLIAAGVFLVIFGLLGYYLCITKCNRLQHP 149
YS + P+ SD + ++G+ L++ L + C + HP
Sbjct: 62 GYPNAVYSVRDPSQSSDAMYVVVPLLGV--------ALLIVIALFIIWRCQLQKATRHHP 113
Query: 150 C---SSAVYERGRHT-PSIIFRR-----------PEEAALSP---LPPS---VEDAGLPS 188
+ + R HT P ++ R EAA SP L PS L S
Sbjct: 114 SYAQNRYLASRAGHTLPRVMVYRGTVHSQGEPSGHREAASSPQVVLGPSRGGRTTVRLES 173
Query: 189 --YEQAVALTRKHSVSPPPPY 207
Y ++L+R S PPP Y
Sbjct: 174 TLYLPELSLSRLSSTPPPPSY 194
>gi|215422383 proline rich Gla (G-carboxyglutamic acid) 1 [Homo
sapiens]
Length = 218
Score = 62.8 bits (151), Expect = 2e-10
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 4/173 (2%)
Query: 35 VFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQ 94
VF + E+AN + R N F E GN+EREC EE C +EEARE F + +KT FW
Sbjct: 4 VFLTGEKANSILKRYPRANGF-FEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEFWS 62
Query: 95 EYSAKGPTTKSDGNREKIDVMGLLTGLIAAGVFLVIFGLLGYYLCITKCNRLQHPCSSAV 154
Y+ + + NR LT + G+F+++ + + C + + +
Sbjct: 63 TYT---KAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGH 119
Query: 155 YERGRHTPSIIFRRPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPPY 207
+H I P + S G TR + PPP Y
Sbjct: 120 IPFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTY 172
>gi|4506135 proline rich Gla (G-carboxyglutamic acid) 1 [Homo
sapiens]
Length = 218
Score = 62.8 bits (151), Expect = 2e-10
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 4/173 (2%)
Query: 35 VFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQ 94
VF + E+AN + R N F E GN+EREC EE C +EEARE F + +KT FW
Sbjct: 4 VFLTGEKANSILKRYPRANGF-FEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEFWS 62
Query: 95 EYSAKGPTTKSDGNREKIDVMGLLTGLIAAGVFLVIFGLLGYYLCITKCNRLQHPCSSAV 154
Y+ + + NR LT + G+F+++ + + C + + +
Sbjct: 63 TYT---KAQQGESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGH 119
Query: 155 YERGRHTPSIIFRRPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPPY 207
+H I P + S G TR + PPP Y
Sbjct: 120 IPFPQHLNIITPPPPPDEVFDSSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTY 172
>gi|4506115 protein C [Homo sapiens]
Length = 461
Score = 57.8 bits (138), Expect = 8e-09
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 33 EEVFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAF 92
+ VF+S E A+ + R N F LE +LEREC EE+C++EEA+EIF + D T+AF
Sbjct: 24 DSVFSSSERAHQVLRIRKRANSF-LEELRHSSLERECIEEICDFEEAKEIFQNVDDTLAF 82
Query: 93 WQEY 96
W ++
Sbjct: 83 WSKH 86
>gi|4506121 protein Z, vitamin K-dependent plasma glycoprotein [Homo
sapiens]
Length = 400
Score = 55.8 bits (133), Expect = 3e-08
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 35 VFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAFWQ 94
VF +AN + R + LE GNLE+EC EE+C YEEARE+F +E T FW+
Sbjct: 24 VFLPASKANDVLVRWKRAGSYLLEELFEGNLEKECYEEICVYEEAREVFENEVVTDEFWR 83
Query: 95 EYSAKGP 101
Y P
Sbjct: 84 RYKGGSP 90
>gi|192447438 protein S, alpha preproprotein [Homo sapiens]
Length = 676
Score = 53.9 bits (128), Expect = 1e-07
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 33 EEVFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAF 92
E F SK++A+ + R+ N LE GNLEREC EELCN EEARE+F ++ +T F
Sbjct: 23 EANFLSKQQASQVLVRKRRANSL-LEETKQGNLERECIEELCNKEEAREVFENDPETDYF 81
Query: 93 WQEY 96
+ +Y
Sbjct: 82 YPKY 85
>gi|4503635 coagulation factor II preproprotein [Homo sapiens]
Length = 622
Score = 51.6 bits (122), Expect = 5e-07
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 33 EEVFTSKEEANFFIHRRLLYNRFDLELFTPGNLERECNEELCNYEEAREIFVDEDKTIAF 92
+ VF + ++A + R N F LE GNLEREC EE C+YEEA E T F
Sbjct: 25 QHVFLAPQQARSLLQRVRRANTF-LEEVRKGNLERECVEETCSYEEAFEALESSTATDVF 83
Query: 93 WQEYSA 98
W +Y+A
Sbjct: 84 WAKYTA 89
>gi|4557617 growth arrest-specific 6 isoform 1 precursor [Homo
sapiens]
Length = 678
Score = 44.7 bits (104), Expect = 7e-05
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 63 GNLERECNEELCNYEEAREIFVDEDKTIAFWQEY-----SAKGPTTKSDG 107
G+LEREC EELC+ EEARE+F ++ +T F+ Y P TK+ G
Sbjct: 59 GHLERECVEELCSREEAREVFENDPETDYFYPRYLDCINKYGSPYTKNSG 108
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 34.3 bits (77), Expect = 0.089
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 142 KCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSV 201
+C++ P + + G H P + P +A + PS +G P+ A A + S
Sbjct: 272 RCHKDVPPAAGGPPQPGPHLPPLGLPAPAASAATAAAPSTVSSGPPATPVAPAPSADGSA 331
Query: 202 SP-----PPPYPGHTKG-------FRVFKKSMSLPSH 226
+P PPP G G ++VFKK L H
Sbjct: 332 APAGVGVPPPATGGGDGPFACPLCWKVFKKPSHLHQH 368
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 34.3 bits (77), Expect = 0.089
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 142 KCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSV 201
+C++ P + + G H P + P +A + PS +G P+ A A + S
Sbjct: 272 RCHKDVPPAAGGPPQPGPHLPPLGLPAPAASAATAAAPSTVSSGPPATPVAPAPSADGSA 331
Query: 202 SP-----PPPYPGHTKG-------FRVFKKSMSLPSH 226
+P PPP G G ++VFKK L H
Sbjct: 332 APAGVGVPPPATGGGDGPFACPLCWKVFKKPSHLHQH 368
>gi|73695473 roquin [Homo sapiens]
Length = 1133
Score = 34.3 bits (77), Expect = 0.089
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 149 PCSSAVYERGRH---TPSIIFR--RPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSVSP 203
P A Y++G + P + R RP +A P PP ++ P Y Q + ++ P
Sbjct: 602 PFEPAPYQQGMYYTPPPQCVSRFVRPPPSAPEPAPPYLDH--YPPYLQERVVNSQYGTQP 659
Query: 204 ---PPPYPGHTKGFRVF 217
PP YP H G RV+
Sbjct: 660 QQYPPIYPSHYDGRRVY 676
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 31.2 bits (69), Expect = 0.75
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 171 EAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTK 212
+A + P PP E G+PS +L ++ PPPP PG +
Sbjct: 639 DATIPPPPPLPEGVGIPS---PSSLPGGTAIPPPPPLPGSAR 677
Score = 27.7 bits (60), Expect = 8.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 169 PEEAALSPLPPSVE-DAGLPSYEQAVALTRKHSVSPPPPYPG 209
P A + P PP + +AG+P L + PPPP+PG
Sbjct: 686 PGSAGIPPPPPPLPGEAGMPP--PPPPLPGGPGIPPPPPFPG 725
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 31.2 bits (69), Expect = 0.75
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 171 EAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTK 212
+A + P PP E G+PS +L ++ PPPP PG +
Sbjct: 648 DATIPPPPPLPEGVGIPS---PSSLPGGTAIPPPPPLPGSAR 686
Score = 27.7 bits (60), Expect = 8.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 169 PEEAALSPLPPSVE-DAGLPSYEQAVALTRKHSVSPPPPYPG 209
P A + P PP + +AG+P L + PPPP+PG
Sbjct: 695 PGSAGIPPPPPPLPGEAGMPP--PPPPLPGGPGIPPPPPFPG 734
>gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens]
Length = 765
Score = 31.2 bits (69), Expect = 0.75
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 168 RPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPP 206
RP +SP+PPSVE+ +P E A T S +P PP
Sbjct: 711 RPGMEPISPVPPSVEEIPVPG-EAVPAPTPPESPTPHPP 748
>gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens]
Length = 766
Score = 31.2 bits (69), Expect = 0.75
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 168 RPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPP 206
RP +SP+PPSVE+ +P E A T S +P PP
Sbjct: 712 RPGMEPISPVPPSVEEIPVPG-EAVPAPTPPESPTPHPP 749
>gi|7661916 lysosomal protein transmembrane 4 alpha [Homo sapiens]
Length = 233
Score = 30.8 bits (68), Expect = 0.98
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 22/84 (26%)
Query: 126 VFLVIFGLLGYYL--CITKCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPSVED 183
VF +F + YL C+ C + Y R+ P I EA PP
Sbjct: 167 VFFALFIIFKAYLINCVWNCYK---------YINNRNVPEIAVYPAFEA-----PPQYV- 211
Query: 184 AGLPSYEQAVALTRKHSVSPPPPY 207
LP+YE AV + K PPPPY
Sbjct: 212 --LPTYEMAVKMPEK---EPPPPY 230
>gi|210147507 lipopolysaccharide-induced TNF-alpha factor isoform 2
[Homo sapiens]
Length = 152
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 179 PSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFK--KSMSLPSH 226
PS + PSYE+ VA+ + +PP P PG T G K M+ PS+
Sbjct: 13 PSSAPSAPPSYEETVAV-NSYYPTPPAPMPGPTTGLVTGPDGKGMNPPSY 61
>gi|210147505 lipopolysaccharide-induced TNF-alpha factor isoform 1
[Homo sapiens]
Length = 161
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 179 PSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFK--KSMSLPSH 226
PS + PSYE+ VA+ + +PP P PG T G K M+ PS+
Sbjct: 13 PSSAPSAPPSYEETVAV-NSYYPTPPAPMPGPTTGLVTGPDGKGMNPPSY 61
>gi|65787265 lipopolysaccharide-induced TNF-alpha factor isoform 1
[Homo sapiens]
Length = 161
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 179 PSVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVFK--KSMSLPSH 226
PS + PSYE+ VA+ + +PP P PG T G K M+ PS+
Sbjct: 13 PSSAPSAPPSYEETVAV-NSYYPTPPAPMPGPTTGLVTGPDGKGMNPPSY 61
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 145 RLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPP 204
R Q+ CS V+ R ++ + A P PS+ P+Y+ + A H+ +PP
Sbjct: 691 RFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIP---TPAYQSSPA--GGHAPTPP 745
Query: 205 PPYP 208
P P
Sbjct: 746 TPAP 749
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 29.6 bits (65), Expect = 2.2
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 145 RLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPP 204
R Q+ CS V+ R ++ + A P PS+ P+Y+ + A H+ +PP
Sbjct: 686 RFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIP---TPAYQSSPA--GGHAPTPP 740
Query: 205 PPYP 208
P P
Sbjct: 741 TPAP 744
>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
family member 2 [Homo sapiens]
Length = 1122
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 167 RRPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPP 206
+ P E L+PLPPS PS + + T +H P PP
Sbjct: 516 KTPSERQLTPLPPSAP----PSADDNIKTTAEHLRGPLPP 551
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 167 RRPEEAALSPLPPSVEDAGLPSYEQAVALTRKHSVSPPPP 206
+ P E L+PLPPS + PS + + + + P PP
Sbjct: 302 KTPPECLLTPLPPSAPPSAPPSADDNLKTRAECLLHPLPP 341
>gi|21464101 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
activation protein, gamma polypeptide [Homo sapiens]
Length = 247
Score = 29.3 bits (64), Expect = 2.9
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 15/158 (9%)
Query: 68 ECNEELCNYEEAREIFVDEDKTI-----AFWQEYSAKGPTTKSDGNREKIDVMGLLTGLI 122
E NE L N E R + K + + W+ S+ T +DGN +KI+++ I
Sbjct: 32 ELNEPLSN--EERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKI 89
Query: 123 AAGVFLV---IFGLLGYYLCITKCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPP 179
+ V + LL YL I C+ Q+ S Y + + +R E A
Sbjct: 90 EKELEAVCQDVLSLLDNYL-IKNCSETQYE-SKVFYLKMK---GDYYRYLAEVATGEKRA 144
Query: 180 SVEDAGLPSYEQAVALTRKHSVSPPPPYPGHTKGFRVF 217
+V ++ +Y +A ++++H P G + VF
Sbjct: 145 TVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVF 182
>gi|209529739 hypothetical protein LOC100132247 [Homo sapiens]
Length = 1133
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 136 YYLCITKCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPSVED 183
Y T NR+ H + S+ + P E L+PLPPS +D
Sbjct: 233 YLTAETLKNRMGHQPPPPTQQHSITDNSLSLKTPPECLLTPLPPSADD 280
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,321,739
Number of Sequences: 37866
Number of extensions: 519288
Number of successful extensions: 2112
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1966
Number of HSP's gapped (non-prelim): 166
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.