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Search of human proteins with 13129044
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13129044 phosducin-like 3 [Homo sapiens]
(239 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13129044 phosducin-like 3 [Homo sapiens] 481 e-136
gi|51944950 phosducin-like 2 [Homo sapiens] 278 2e-75
gi|169216983 PREDICTED: similar to hCG2040277 [Homo sapiens] 75 4e-14
gi|239752276 PREDICTED: similar to hCG2040277 [Homo sapiens] 75 4e-14
gi|239746789 PREDICTED: similar to hCG2040277 [Homo sapiens] 75 4e-14
gi|88758594 phosducin-like [Homo sapiens] 74 9e-14
gi|32967591 phosducin isoform a [Homo sapiens] 64 1e-10
gi|12408668 phosducin isoform b [Homo sapiens] 61 7e-10
gi|18104959 thioredoxin domain containing 9 [Homo sapiens] 58 8e-09
gi|38044112 restin isoform b [Homo sapiens] 42 6e-04
gi|4506751 restin isoform a [Homo sapiens] 42 6e-04
gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A... 40 0.001
gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A... 40 0.001
gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo ... 40 0.001
gi|17975763 myelin transcription factor 1 [Homo sapiens] 39 0.005
gi|87298939 hypothetical protein LOC131831 [Homo sapiens] 37 0.020
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 36 0.026
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 36 0.026
gi|50726968 microfibrillar-associated protein 1 [Homo sapiens] 36 0.034
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 35 0.044
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 35 0.075
gi|13654270 LAS1-like [Homo sapiens] 35 0.075
gi|221219020 NYD-SP11 protein [Homo sapiens] 34 0.13
gi|4504425 high-mobility group box 1 [Homo sapiens] 34 0.13
gi|239752551 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 34 0.13
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 34 0.13
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 34 0.13
gi|65287717 eukaryotic translation initiation factor 2 alpha kin... 34 0.13
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens] 33 0.17
>gi|13129044 phosducin-like 3 [Homo sapiens]
Length = 239
Score = 481 bits (1238), Expect = e-136
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHE 60
MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHE
Sbjct: 1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHE 60
Query: 61 DEFNEEDERAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLY 120
DEFNEEDERAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLY
Sbjct: 61 DEFNEEDERAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLY 120
Query: 121 KQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIG 180
KQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIG
Sbjct: 121 KQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIG 180
Query: 181 PLVFGGMNLTRDELEWKLSESGAIMTDLEENPKKPIEDVLLSSVRRSVLMKRDSDSEGD 239
PLVFGGMNLTRDELEWKLSESGAIMTDLEENPKKPIEDVLLSSVRRSVLMKRDSDSEGD
Sbjct: 181 PLVFGGMNLTRDELEWKLSESGAIMTDLEENPKKPIEDVLLSSVRRSVLMKRDSDSEGD 239
>gi|51944950 phosducin-like 2 [Homo sapiens]
Length = 241
Score = 278 bits (712), Expect = 2e-75
Identities = 139/236 (58%), Positives = 178/236 (75%), Gaps = 3/236 (1%)
Query: 1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHE 60
MQDPN DTEWNDILR GILPPKE K+ E E R+ ++++VK +E MTL +L++ E
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKEESKD--EIEEMVLRLQKEAMVKPFEKMTLAQLKEAE 58
Query: 61 DEFNEEDERAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLY 120
DEF+EED +A+E YR++RL EWKA K K KFGE+ EISG YV EVT A E +WVI+HLY
Sbjct: 59 DEFDEEDMQAVETYRKKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEEDVWVIIHLY 118
Query: 121 KQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIG 180
+ IP+C L+NQHLS LARKFP+ KF+KAI +CI +Y D LPTIFVY G I+A+FIG
Sbjct: 119 RSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIG 178
Query: 181 PLVFGGMNLTRDELEWKLSESGAIMTDLEENPKKPIEDVLLSSVRRSVLMKRDSDS 236
+ GG+NL +ELEWKL+E GAI TDLEENP+K + D+++SS+R + + DSDS
Sbjct: 179 IIECGGINLKLEELEWKLAEVGAIQTDLEENPRKDMVDMMVSSIRNTSI-HDDSDS 233
>gi|169216983 PREDICTED: similar to hCG2040277 [Homo sapiens]
Length = 70
Score = 75.5 bits (184), Expect = 4e-14
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 5/73 (6%)
Query: 1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQ-QSVVKTYEDMTLEELEDH 59
MQDPN DTEWNDILR GILPPKE E ++E EE LQ +++VK +E MTL +L++
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKE---ESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEA 57
Query: 60 EDEFNEEDERAIE 72
EDEF +ED +AIE
Sbjct: 58 EDEF-DEDMQAIE 69
>gi|239752276 PREDICTED: similar to hCG2040277 [Homo sapiens]
Length = 70
Score = 75.5 bits (184), Expect = 4e-14
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 5/73 (6%)
Query: 1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQ-QSVVKTYEDMTLEELEDH 59
MQDPN DTEWNDILR GILPPKE E ++E EE LQ +++VK +E MTL +L++
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKE---ESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEA 57
Query: 60 EDEFNEEDERAIE 72
EDEF +ED +AIE
Sbjct: 58 EDEF-DEDMQAIE 69
>gi|239746789 PREDICTED: similar to hCG2040277 [Homo sapiens]
Length = 70
Score = 75.5 bits (184), Expect = 4e-14
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 5/73 (6%)
Query: 1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQ-QSVVKTYEDMTLEELEDH 59
MQDPN DTEWNDILR GILPPKE E ++E EE LQ +++VK +E MTL +L++
Sbjct: 1 MQDPNEDTEWNDILRDFGILPPKE---ESKDEIEEMVLCLQKEAMVKPFEKMTLAQLKEA 57
Query: 60 EDEFNEEDERAIE 72
EDEF +ED +AIE
Sbjct: 58 EDEF-DEDMQAIE 69
>gi|88758594 phosducin-like [Homo sapiens]
Length = 301
Score = 74.3 bits (181), Expect = 9e-14
Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 19/215 (8%)
Query: 30 EEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRRRRLAEWKATKLKN 89
EEE +++Q+ LQ+ K MTL+E ++ ++DE ++ YR++R+ E + K
Sbjct: 101 EEEEQQKQKDLQE---KISGKMTLKEFAIMNED--QDDEEFLQQYRKQRMEEMRQQLHKG 155
Query: 90 -KFGEVLEIS-GKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARKFPDVKFI 147
+F +V EIS G+ ++ + K + + +++H+Y+ GIP +N + LA ++P VKF
Sbjct: 156 PQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFC 215
Query: 148 KAISTT--CIPNYPDRNLPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEWKLSESGAIM 205
K S+ + LP + +Y G++ F+ G + +LE L E G +
Sbjct: 216 KVKSSVIGASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLL- 274
Query: 206 TDLEENPKKPIEDVLLSSVRRSVLM-KRDSDSEGD 239
P+K E ++L+SVR S DSD E D
Sbjct: 275 ------PEK--EVLVLTSVRNSATCHSEDSDLEID 301
>gi|32967591 phosducin isoform a [Homo sapiens]
Length = 246
Score = 63.9 bits (154), Expect = 1e-10
Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 20 LPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRRRRL 79
+PP + + L + + + R + S + M+++E E E +EDE + YRR+ +
Sbjct: 42 IPPSKK-EILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKE--KEDENCLRKYRRQCM 98
Query: 80 AEW-KATKLKNKFGEVLEI-SGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGL 137
+ + ++G V E+ +GK +++ + K + +++H+Y+ GI C +N L+ L
Sbjct: 99 QDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCL 158
Query: 138 ARKFPDVKF--IKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFI 179
A ++P VKF IKA +T + LPT+ +Y G++ + FI
Sbjct: 159 AAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFI 202
>gi|12408668 phosducin isoform b [Homo sapiens]
Length = 194
Score = 61.2 bits (147), Expect = 7e-10
Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 51 MTLEELEDHEDEFNEEDERAIEMYRRRRLAEW-KATKLKNKFGEVLEI-SGKDYVQEVTK 108
M+++E E E +EDE + YRR+ + + + ++G V E+ +GK +++ + K
Sbjct: 20 MSIQEYELIHKE--KEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEK 77
Query: 109 AGEGLWVILHLYKQGIPLCALINQHLSGLARKFPDVKF--IKAISTTCIPNYPDRNLPTI 166
+ +++H+Y+ GI C +N L+ LA ++P VKF IKA +T + LPT+
Sbjct: 78 ELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTL 137
Query: 167 FVYLEGDIKAQFI 179
+Y G++ + FI
Sbjct: 138 LIYKGGELISNFI 150
>gi|18104959 thioredoxin domain containing 9 [Homo sapiens]
Length = 226
Score = 57.8 bits (138), Expect = 8e-09
Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 19/218 (8%)
Query: 35 EEQRILQQSVVKTYEDMTLEELED-HEDEFNEEDERAIEMYRRRRLAEWKATKLKNKFGE 93
E Q + +V+ + D +++L+ EDE E+ ++ R+ + + K L GE
Sbjct: 15 EHQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLQALRKAQ--QQKQEWLSKGHGE 72
Query: 94 VLEI-SGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARKFPDVKFIKAIST 152
EI S +D+ QEV ++ V+ H Y+ C ++++HL+ L++K + KF+K ++
Sbjct: 73 YREIPSERDFFQEVKESEN---VVCHFYRDSTFRCKILDRHLAILSKKHLETKFLK-LNV 128
Query: 153 TCIPNYPDR----NLPTIFVYLEGDIKAQFIGPLVFGGM-NLTRDELEWKLSE------S 201
P +R +PT+ + +G + +G G + T + LEW+L S
Sbjct: 129 EKAPFLCERLHIKVIPTLALLKDGKTQDYVVGFTDLGNTDDFTTETLEWRLGSSDILNYS 188
Query: 202 GAIMTDLEENPKKPIEDVLLSSVRRSVLMKRDSDSEGD 239
G +M +N KK + + K DSDS+ D
Sbjct: 189 GNLMEPPFQNQKKFGTNFTKLEKKTIRGKKYDSDSDDD 226
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 41.6 bits (96), Expect = 6e-04
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 23 KESLKELEEEAEEEQRILQQSVVKTYE------------DMTLEELEDHEDEFNEEDERA 70
KE E EEA QR +Q++V K ++ + E L D E +F E+DER
Sbjct: 811 KEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDERE 870
Query: 71 IEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGL 113
++ + + KL+N E++++SG D ++TK + L
Sbjct: 871 EQLIKAKE-------KLENDIAEIMKMSG-DNSSQLTKMNDEL 905
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 41.6 bits (96), Expect = 6e-04
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 23 KESLKELEEEAEEEQRILQQSVVKTYE------------DMTLEELEDHEDEFNEEDERA 70
KE E EEA QR +Q++V K ++ + E L D E +F E+DER
Sbjct: 846 KEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRENLADMEAKFREKDERE 905
Query: 71 IEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGL 113
++ + + KL+N E++++SG D ++TK + L
Sbjct: 906 EQLIKAKE-------KLENDIAEIMKMSG-DNSSQLTKMNDEL 940
>gi|239755597 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 51 MTLEELEDHEDEFNEEDERAIEM 73
M LEELEDH DEF+EEDE AIE+
Sbjct: 1 MNLEELEDHVDEFDEEDEHAIEI 23
>gi|239750094 PREDICTED: similar to HIG1 domain family, member 1A
[Homo sapiens]
Length = 124
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 51 MTLEELEDHEDEFNEEDERAIEM 73
M LEELEDH DEF+EEDE AIE+
Sbjct: 1 MNLEELEDHVDEFDEEDEHAIEI 23
>gi|239744403 PREDICTED: hypothetical protein XP_002343136 [Homo
sapiens]
Length = 124
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 51 MTLEELEDHEDEFNEEDERAIEM 73
M LEELEDH DEF+EEDE AIE+
Sbjct: 1 MNLEELEDHVDEFDEEDEHAIEI 23
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 38.5 bits (88), Expect = 0.005
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 15 RKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDE 68
++KGIL +E +E EEE EEE+ ++ + E+ EE E+ E+E EE+E
Sbjct: 250 KQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 303
Score = 28.1 bits (61), Expect = 7.0
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 23 KESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRRRRLAEW 82
+E +E EEE EEE+ ++ + E+ EE E D +ED + L
Sbjct: 272 EEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPELRGP 331
Query: 83 KATKLKNKFGEVLEISGKDYVQEVT 107
++ K ++ ++E+ D E T
Sbjct: 332 ESPSPKPEYSVIVEVRSDDDKDEDT 356
Score = 27.7 bits (60), Expect = 9.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 31 EEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIE 72
E+A E+ Q+ ++ E+ EE E+ E+E +EE+E E
Sbjct: 241 EDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEE 282
>gi|87298939 hypothetical protein LOC131831 [Homo sapiens]
Length = 663
Score = 36.6 bits (83), Expect = 0.020
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 21 PPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRRRRLA 80
P K+ KE EEE EEE+ ++ V+ E EE+E+ E+E EE+E +E +
Sbjct: 13 PGKKDQKESEEELEEEE---EEEEVEEEE----EEVEEEEEEVEEEEEEVVE---EELVG 62
Query: 81 EWKATKLKNKFGEVLEISGKDYVQEVTKAGE 111
E + + F E +Y+ +VT G+
Sbjct: 63 EEQELEAPETFSE-------EYLWKVTDIGD 86
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 36.2 bits (82), Expect = 0.026
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 16 KKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDER 69
++G+ E +E+EE+AEE++ + + + E+ EE E+ E+E E+DER
Sbjct: 202 EEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDER 255
Score = 30.0 bits (66), Expect = 1.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 29 LEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRR 76
+EE+ EE++ + + + D EE E+ E+E EE+E E Y +
Sbjct: 205 VEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQ 252
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 36.2 bits (82), Expect = 0.026
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 16 KKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDER 69
++G+ E +E+EE+AEE++ + + + E+ EE E+ E+E E+DER
Sbjct: 202 EEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDER 255
Score = 30.0 bits (66), Expect = 1.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 29 LEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRR 76
+EE+ EE++ + + + D EE E+ E+E EE+E E Y +
Sbjct: 205 VEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQ 252
>gi|50726968 microfibrillar-associated protein 1 [Homo sapiens]
Length = 439
Score = 35.8 bits (81), Expect = 0.034
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 27 KELEEEAEEEQRILQQSVVKTYEDMTLEELEDHE------DEFNEEDERAIEMYRRRRLA 80
KELE+EA+ ++ +K E+ T +ELE+++ D N +DE E Y ++
Sbjct: 223 KELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVR 282
Query: 81 EWKATKLKNKFGEVLE 96
E K K + E LE
Sbjct: 283 ELKRIKRDREDREALE 298
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 27 KELEEEAEEEQRILQQSVVKTYE-----DMTLEELEDHEDEFNEE-DERAIEMYRRRRLA 80
+++EE ++I++ VV + D E ED +E EE D+ IE RRR +
Sbjct: 95 EDVEERLARHRKIVEPEVVGESDSEVEGDAWRMEREDSSEEEEEEIDDEEIE--RRRGMM 152
Query: 81 EWKATKLKNKFGEVLEI 97
+A + KN+ EV+E+
Sbjct: 153 RQRAQERKNEEMEVMEV 169
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 35.4 bits (80), Expect = 0.044
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 15 RKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIE-- 72
R+K + +E ++E EE+ +E++ +Q+ K +E E++++ E++ E++E+ E
Sbjct: 594 REKKMREEEEMMREQEEKMQEQEEKMQEQEEKMWEQE--EKMQEQEEKMWEQEEKMWEQE 651
Query: 73 --MYRRRRLAEWK 83
M+ ++RL E K
Sbjct: 652 EKMWEQQRLPEQK 664
Score = 34.3 bits (77), Expect = 0.098
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 23 KESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIE----MYRRRR 78
+ES++E E++ EE+ ++++ K E E++++ E+E E++E+ E M+ ++R
Sbjct: 712 EESMREREKKMREEEEMMREQEEKMQEQE--EKMQEQEEEMWEQEEKMWEQEEKMWEQQR 769
Query: 79 LAEWK 83
L E K
Sbjct: 770 LPEQK 774
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 23 KESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRRRRLAEW 82
++ L+E E+E E+++ L++ +EL + E++ E++E+ E + R E
Sbjct: 320 EKRLREQEKELREQEKELREQ----------KELREQEEQMQEQEEKMWEQEEKMREQEE 369
Query: 83 KATKLKNKFGEVLEISGKDYVQEVTKAGEGLW 114
K + + + E E ++ Q++ E +W
Sbjct: 370 KMWRQEERLWE-QEKQMREQEQKMRDQEERMW 400
Score = 30.0 bits (66), Expect = 1.8
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 16 KKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELED----HEDEFNEEDERAI 71
+K + ++ ++ EE+ +EE+RI ++ E+ T+ E E+ E+ E++E+
Sbjct: 429 EKKMQEQEKKTRDQEEKMQEEERIREREKKMREEEETMREQEEKMQKQEENMWEQEEKE- 487
Query: 72 EMYRRRRLAE-----WKATKLKNKFGEVLEISGKDYVQE 105
++++RL E W+ K++ + ++ E K QE
Sbjct: 488 --WQQQRLPEQKEKLWEQEKMQEQEEKIWEQEEKIRDQE 524
Score = 29.3 bits (64), Expect = 3.2
Identities = 23/112 (20%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 2 QDPNADTEWNDILRKKGILPPKESLKELEE---EAEEEQRILQQSVVKTYEDMTLEE--L 56
Q+ + ++ +K + +E ++E EE E EE+ R ++ + + E + +E +
Sbjct: 326 QEKELREQEKELREQKELREQEEQMQEQEEKMWEQEEKMREQEEKMWRQEERLWEQEKQM 385
Query: 57 EDHEDEFNEEDERAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTK 108
+ E + +++ER E R R E + + + + +V ++ + +QE K
Sbjct: 386 REQEQKMRDQEERMWEQDERLREKEERMREQEKMWEQVEKMREEKKMQEQEK 437
Score = 28.9 bits (63), Expect = 4.1
Identities = 20/103 (19%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 15 RKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELED---HEDEFNEEDERAI 71
R+K + +E+++E EE+ ++++ + + K ++ L E ++ +++ E++E+
Sbjct: 455 REKKMREEEETMREQEEKMQKQEENMWEQEEKEWQQQRLPEQKEKLWEQEKMQEQEEKIW 514
Query: 72 EMYRRRRLAE---------WKATKLKNKFGEVLEISGKDYVQE 105
E + R E W+ K++ + ++ E K QE
Sbjct: 515 EQEEKIRDQEEMWGQEKKMWRQEKMREQEDQMWEQEEKMRDQE 557
Score = 28.5 bits (62), Expect = 5.4
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 14 LRKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEE---LEDHEDEFNEEDERA 70
+ KK K++ + E+ EEE+ ++ ++ E+M E+ +++ E++ E++E+
Sbjct: 567 MEKKTQEQEKKTWDQEEKMREEERMREREKKMREEEEMMREQEEKMQEQEEKMQEQEEKM 626
Query: 71 IEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLW 114
E + + E K + + K E E + Q + + E LW
Sbjct: 627 WEQEEKMQEQEEKMWEQEEKMWEQEEKMWEQ--QRLPEQKEKLW 668
Score = 27.7 bits (60), Expect = 9.2
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 23 KESLKELEEEA-EEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRRRRLAE 81
+E ++E EE+ +E+R+ +Q ++ +++ D E+ E+DER E R R E
Sbjct: 361 EEKMREQEEKMWRQEERLWEQEKQMREQE---QKMRDQEERMWEQDERLREKEERMREQE 417
Query: 82 --WKATKLKNKFGEVLEISGKDYVQE 105
W+ + + ++ E K QE
Sbjct: 418 KMWEQVEKMREEKKMQEQEKKTRDQE 443
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 34.7 bits (78), Expect = 0.075
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 23 KESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDE---RAIEMYRRRRL 79
KE+ K E+E EE++R ++ K E+ EE E+ E++ EE E R + +RRR
Sbjct: 47 KETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRRK 106
Query: 80 AEWKATKLKNK 90
E + K K +
Sbjct: 107 EEEEEKKKKRR 117
>gi|13654270 LAS1-like [Homo sapiens]
Length = 734
Score = 34.7 bits (78), Expect = 0.075
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 25 SLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEM 73
S+ +++EE +EE+ +L V + E+ EE E+ ED+ ++E+E +E+
Sbjct: 560 SVNDVKEEEKEEKEVLPDQVEEEEENDDQEEEEEDEDDEDDEEEDRMEV 608
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 20 LPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRRRRL 79
L +ESL EEE EE+ ++ V+ E+ EE E E + +E+E ++++
Sbjct: 2237 LEKQESLSSEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEEE-----KKKKK 2291
Query: 80 AEWKATKLKNK---FGEVLEISGKDYVQEVTKAGE 111
E K +++ K F E EI ++ + ++ E
Sbjct: 2292 KEKKKEEVQEKEEVFEEKEEIMSEEETESLSDEEE 2326
Score = 32.3 bits (72), Expect = 0.37
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 17 KGILPPK-ESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYR 75
K IL K E L + E+ + +++ L Q + + DM EEL E+E N+E+ + +E
Sbjct: 1690 KNILAQKVEELPQREQNLDWQEKELAQELEELEWDM--EELSWKEEELNQEEGKLVE--E 1745
Query: 76 RRRLAE------WKATKLKNK 90
+++LAE W+ KL +
Sbjct: 1746 KKKLAEEEEALAWQREKLSEE 1766
Score = 30.8 bits (68), Expect = 1.1
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 15 RKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMY 74
+KK KE ++E EE EE++ I+ + ++ D EE E+ EE +R E+
Sbjct: 2288 KKKKKEKKKEEVQEKEEVFEEKEEIMSEEETESLSD---EEEEEESCSLEEEVDREKEIL 2344
Query: 75 RRRRLAEWKATKLKNKFG 92
++ + + + + K+ G
Sbjct: 2345 KKEKQFKLQEQRRKSLRG 2362
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 33.9 bits (76), Expect = 0.13
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 12/53 (22%)
Query: 16 KKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDE 68
KKG++ ++S K+ EEE +EE ++ EE ED EDE EED+
Sbjct: 172 KKGVVKAEKSKKKKEEEEDEE------------DEEDEEEEEDEEDEDEEEDD 212
>gi|239752551 PREDICTED: hypothetical protein [Homo sapiens]
Length = 238
Score = 33.9 bits (76), Expect = 0.13
Identities = 19/73 (26%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 15 RKKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIE-- 72
R+K + +E ++E EE+ +E++ +++ K +E E++++ E++ E++E+ E
Sbjct: 10 REKKMREEEEMMREQEEKMQEQEEKMREQEEKMWEQE--EKMQEQEEKMWEQEEKMWEQE 67
Query: 73 --MYRRRRLAEWK 83
M+ ++RL E K
Sbjct: 68 EKMWEQQRLPEQK 80
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 33.9 bits (76), Expect = 0.13
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 8 TEWNDILRKKGILPP-KESL-KELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNE 65
++WND + +K L ES+ +++E + + + ++ V+ + L E EDH +
Sbjct: 2740 SQWNDYVERKNQLEQWMESVDQKIEHPLQPQPGLKEKFVLLDHLQSILSEAEDHTRALHR 2799
Query: 66 EDERAIEMYRRRRLAEWKAT---KLKNKFGEVLEISGKDY--VQEVTK 108
++ E+Y + +K T +LK +F +++ ++ + V+E+ K
Sbjct: 2800 LIAKSRELYEKTEDESFKDTAQEELKTQFNDIMTVAKEKMRKVEEIVK 2847
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 33.9 bits (76), Expect = 0.13
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 8 TEWNDILRKKGILPP-KESL-KELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNE 65
++WND + +K L ES+ +++E + + + ++ V+ + L E EDH +
Sbjct: 2733 SQWNDYVERKNQLEQWMESVDQKIEHPLQPQPGLKEKFVLLDHLQSILSEAEDHTRALHR 2792
Query: 66 EDERAIEMYRRRRLAEWKAT---KLKNKFGEVLEISGKDY--VQEVTK 108
++ E+Y + +K T +LK +F +++ ++ + V+E+ K
Sbjct: 2793 LIAKSRELYEKTEDESFKDTAQEELKTQFNDIMTVAKEKMRKVEEIVK 2840
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 33.9 bits (76), Expect = 0.13
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 16 KKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNE----EDERAI 71
+K P K S K+ ++E+R ++ + D L + E+ ED F E E+E+ +
Sbjct: 5 EKMTFPEKPSHKKYRAALKKEKRKKRRQELARLRDSGLSQKEEEEDTFIEEQQLEEEKLL 64
Query: 72 EMYRRRRLAEW 82
E R+R EW
Sbjct: 65 ERERQRLHEEW 75
>gi|65287717 eukaryotic translation initiation factor 2 alpha kinase
4 [Homo sapiens]
Length = 1649
Score = 33.9 bits (76), Expect = 0.13
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 21 PPKESLKELEEEA--EEEQRILQQSVVKTYEDM-TLEELEDHEDEFNEEDERAIEMYRRR 77
PPK +E+ E EE+QR+L+ + E L E++ ++E EE +R EM ++
Sbjct: 141 PPKSFHEEMLERRAQEEQQRLLEAKRKEEQEQREILHEIQRRKEEIKEEKKRK-EMAKQE 199
Query: 78 RLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILH 118
RL E+ +S +D+ + G ILH
Sbjct: 200 RL-------------EIASLSNQDHTSKKDPGGHRTAAILH 227
>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 33.5 bits (75), Expect = 0.17
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 16 KKGILPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYR 75
++G+ +E ++E EEE EEE++ ++ ED EE E+ ++E EE+E+ +
Sbjct: 113 QQGLPVEEEEVEEEEEEVEEEEKEEEKE-----EDEEEEEKEEEKEEDEEEEEKEGKKME 167
Query: 76 RRRLAEWKATKLK 88
++ E T+++
Sbjct: 168 EEKVEEEIDTEIQ 180
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,436,793
Number of Sequences: 37866
Number of extensions: 436129
Number of successful extensions: 3783
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 2814
Number of HSP's gapped (non-prelim): 963
length of query: 239
length of database: 18,247,518
effective HSP length: 99
effective length of query: 140
effective length of database: 14,498,784
effective search space: 2029829760
effective search space used: 2029829760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.