Guide to the Human Genome
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Name: LOC653707 Sequence: fasta or formatted (70aa) NCBI GI: 239746789
Description:

PREDICTED: similar to hCG2040277

Not currently referenced in the text

Other entries for this name:
alt mRNA {70aa} PREDICTED: similar to hCG2040277
alt mRNA {70aa} PREDICTED: similar to hCG2040277
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          4           1
 C cysteine            1.4          1           1
 D aspartate          11.4          8           1
 E glutamate          20.0         14           2
 F phenylalanine       4.3          3           1
 G glycine             1.4          1           1
 H histidine           0.0          0           0
 I isoleucine          5.7          4           1
 K lysine              8.6          6           1
 L leucine             8.6          6           1
 M methionine          7.1          5           1
 N asparagine          2.9          2           1
 P proline             5.7          4           2
 Q glutamine           5.7          4           1
 R arginine            1.4          1           1
 S serine              1.4          1           1
 T threonine           4.3          3           1
 V valine              2.9          2           1
 W tryptophan          1.4          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040277 
LOC653707             1.000   PREDICTED: similar to hCG2040277 
LOC653707             1.000   PREDICTED: similar to hCG2040277 
PDCL2                 0.917   phosducin-like 2 
PDCL3                 0.417   phosducin-like 3 
CDC40                 0.017   cell division cycle 40 homolog 
FHAD1                 0.017   forkhead-associated (FHA) phosphopeptide binding do...
NPM2                  0.017   nucleoplasmin 2 
CHRNB3                0.017   cholinergic receptor, nicotinic, beta polypeptide 3 [...
HOOK2                 0.017   hook homolog 2 isoform 2 
HOOK2                 0.017   hook homolog 2 isoform 1 
C15orf42              0.008   leucine-rich repeat kinase 1 
LOC100290563          0.008   PREDICTED: hypothetical protein XP_002347385 
KIAA2026              0.008   hypothetical protein LOC158358 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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