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Search of human proteins with 4557565
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
(1493 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557565 excision repair cross-complementing rodent repair def... 3004 0.0
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 338 3e-92
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 295 3e-79
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 289 2e-77
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 287 5e-77
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 282 1e-75
gi|216548193 RAD54-like protein [Homo sapiens] 276 8e-74
gi|216548186 RAD54-like protein [Homo sapiens] 276 8e-74
gi|6912622 RAD54 homolog B [Homo sapiens] 274 4e-73
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 273 7e-73
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 264 5e-70
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 263 1e-69
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 263 1e-69
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 261 5e-69
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 261 5e-69
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 261 5e-69
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 261 5e-69
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 259 2e-68
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 257 5e-68
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 257 5e-68
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 257 7e-68
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 257 7e-68
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 257 7e-68
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 257 7e-68
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 256 9e-68
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 254 4e-67
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 253 7e-67
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 249 2e-65
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 245 2e-64
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 244 6e-64
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 3004 bits (7789), Expect = 0.0
Identities = 1493/1493 (100%), Positives = 1493/1493 (100%)
Query: 1 MPNEGIPHSSQTQEQDCLQSQPVSNNEEMAIKQESGGDGEVEEYLSFRSVGDGLSTSAVG 60
MPNEGIPHSSQTQEQDCLQSQPVSNNEEMAIKQESGGDGEVEEYLSFRSVGDGLSTSAVG
Sbjct: 1 MPNEGIPHSSQTQEQDCLQSQPVSNNEEMAIKQESGGDGEVEEYLSFRSVGDGLSTSAVG 60
Query: 61 CASAAPRRGPALLHIDRHQIQAVEPSAQALELQGLGVDVYDQDVLEQGVLQQVDNAIHEA 120
CASAAPRRGPALLHIDRHQIQAVEPSAQALELQGLGVDVYDQDVLEQGVLQQVDNAIHEA
Sbjct: 61 CASAAPRRGPALLHIDRHQIQAVEPSAQALELQGLGVDVYDQDVLEQGVLQQVDNAIHEA 120
Query: 121 SRASQLVDVEKEYRSVLDDLTSCTTSLRQINKIIEQLSPQAATSRDINRKLDSVKRQKYN 180
SRASQLVDVEKEYRSVLDDLTSCTTSLRQINKIIEQLSPQAATSRDINRKLDSVKRQKYN
Sbjct: 121 SRASQLVDVEKEYRSVLDDLTSCTTSLRQINKIIEQLSPQAATSRDINRKLDSVKRQKYN 180
Query: 181 KEQQLKKITAKQKHLQAILGGAEVKIELDHASLEEDAEPGPSSLGSMLMPVQETAWEELI 240
KEQQLKKITAKQKHLQAILGGAEVKIELDHASLEEDAEPGPSSLGSMLMPVQETAWEELI
Sbjct: 181 KEQQLKKITAKQKHLQAILGGAEVKIELDHASLEEDAEPGPSSLGSMLMPVQETAWEELI 240
Query: 241 RTGQMTPFGTQIPQKQEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAARKAPA 300
RTGQMTPFGTQIPQKQEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAARKAPA
Sbjct: 241 RTGQMTPFGTQIPQKQEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAARKAPA 300
Query: 301 PVTPPAPVQNKNKPNKKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKARRPWESDMR 360
PVTPPAPVQNKNKPNKKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKARRPWESDMR
Sbjct: 301 PVTPPAPVQNKNKPNKKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKARRPWESDMR 360
Query: 361 PEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQ 420
PEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQ
Sbjct: 361 PEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQ 420
Query: 421 EIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRL 480
EIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRL
Sbjct: 421 EIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRL 480
Query: 481 KLEDDSEESDAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTI 540
KLEDDSEESDAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTI
Sbjct: 481 KLEDDSEESDAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTI 540
Query: 541 QIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHET 600
QIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHET
Sbjct: 541 QIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHET 600
Query: 601 GSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTL 660
GSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTL
Sbjct: 601 GSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTL 660
Query: 661 ACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNAS 720
ACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNAS
Sbjct: 661 ACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNAS 720
Query: 721 PVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV 780
PVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV
Sbjct: 721 PVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV 780
Query: 781 DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGK 840
DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGK
Sbjct: 781 DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGK 840
Query: 841 MIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITR 900
MIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITR
Sbjct: 841 MIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITR 900
Query: 901 YNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVY 960
YNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVY
Sbjct: 901 YNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVY 960
Query: 961 RLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQSTETSA 1020
RLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQSTETSA
Sbjct: 961 RLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQSTETSA 1020
Query: 1021 IFAGTGSDVQTPKCHLKRRIQPAFGADHDVPKRKKFPASNISVNDATSSEEKSEAKGAEV 1080
IFAGTGSDVQTPKCHLKRRIQPAFGADHDVPKRKKFPASNISVNDATSSEEKSEAKGAEV
Sbjct: 1021 IFAGTGSDVQTPKCHLKRRIQPAFGADHDVPKRKKFPASNISVNDATSSEEKSEAKGAEV 1080
Query: 1081 NAVTSNRSDPLKDDPHMSSNVTSNDRLGEETNAVSGPEELSVISGNGECSNSSGTGKTSM 1140
NAVTSNRSDPLKDDPHMSSNVTSNDRLGEETNAVSGPEELSVISGNGECSNSSGTGKTSM
Sbjct: 1081 NAVTSNRSDPLKDDPHMSSNVTSNDRLGEETNAVSGPEELSVISGNGECSNSSGTGKTSM 1140
Query: 1141 PSGDESIDEKLGLSYKRERPSQAQTEAFWENKQMENNFYKHKSKTKHHSVAEEETLEKHL 1200
PSGDESIDEKLGLSYKRERPSQAQTEAFWENKQMENNFYKHKSKTKHHSVAEEETLEKHL
Sbjct: 1141 PSGDESIDEKLGLSYKRERPSQAQTEAFWENKQMENNFYKHKSKTKHHSVAEEETLEKHL 1200
Query: 1201 RPKQKPKNSKHCRDAKFEGTRIPHLVKKRRYQKQDSENKSEAKEQSNDDYVLEKLFKKSV 1260
RPKQKPKNSKHCRDAKFEGTRIPHLVKKRRYQKQDSENKSEAKEQSNDDYVLEKLFKKSV
Sbjct: 1201 RPKQKPKNSKHCRDAKFEGTRIPHLVKKRRYQKQDSENKSEAKEQSNDDYVLEKLFKKSV 1260
Query: 1261 GVHSVMKHDAIMDGASPDYVLVEAEANRVAQDALKALRLSRQRCLGAVSGVPTWTGHRGI 1320
GVHSVMKHDAIMDGASPDYVLVEAEANRVAQDALKALRLSRQRCLGAVSGVPTWTGHRGI
Sbjct: 1261 GVHSVMKHDAIMDGASPDYVLVEAEANRVAQDALKALRLSRQRCLGAVSGVPTWTGHRGI 1320
Query: 1321 SGAPAGKKSRFGKKRNSNFSVQHPSSTSPTEKCQDGIMKKEGKDNVPEHFSGRAEDADSS 1380
SGAPAGKKSRFGKKRNSNFSVQHPSSTSPTEKCQDGIMKKEGKDNVPEHFSGRAEDADSS
Sbjct: 1321 SGAPAGKKSRFGKKRNSNFSVQHPSSTSPTEKCQDGIMKKEGKDNVPEHFSGRAEDADSS 1380
Query: 1381 SGPLASSSLLAKMRARNHLILPERLESESGHLQEASALLPTTEHDDLLVEMRNFIAFQAH 1440
SGPLASSSLLAKMRARNHLILPERLESESGHLQEASALLPTTEHDDLLVEMRNFIAFQAH
Sbjct: 1381 SGPLASSSLLAKMRARNHLILPERLESESGHLQEASALLPTTEHDDLLVEMRNFIAFQAH 1440
Query: 1441 TDGQASTREILQEFESKLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEYC 1493
TDGQASTREILQEFESKLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEYC
Sbjct: 1441 TDGQASTREILQEFESKLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEYC 1493
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 338 bits (866), Expect = 3e-92
Identities = 208/579 (35%), Positives = 316/579 (54%), Gaps = 68/579 (11%)
Query: 482 LEDDSEESDAEFDE----GFKVPGFLFKKLFKYQQTGVRWLWELHCQ-QAGGILGDEMGL 536
LE+ +E+ D EF + G + L +LF++Q+ G+ +L+ L+ + GGIL D+MGL
Sbjct: 67 LEELAEQGDDEFTDVCNSGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGL 126
Query: 537 GKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAI 596
GKT+QIIAFL+G+ + + + +++ PT +++ WVKEF W P RV
Sbjct: 127 GKTVQIIAFLSGMFDASL-----------VNHVLLIMPTNLINTWVKEFIKWTPGMRVKT 175
Query: 597 LHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYD-----WHYVILDEGHKI 651
H G ++ + + + +G++IT+Y + +S + W YVILDE HKI
Sbjct: 176 FH--GPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKI 233
Query: 652 RNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKL-GTLPVFMEQFSVP 710
+ + + + +R++L+G+P+QNNL+ELWSLFDF G L GTL F ++ P
Sbjct: 234 KTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENP 293
Query: 711 ITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLS--------------- 755
IT +A+P + +K + L I PY LRR K DV+ S
Sbjct: 294 ITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVD 353
Query: 756 -------LPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNH 808
L KN+ +++ RL Q ++Y+ FV + +L + L L+K+C+H
Sbjct: 354 AICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDH 413
Query: 809 PDLFSGGPKNLKGL--------------PD----DELEEDQFGYWKRSGKMIVVESLLKI 850
P L S L L PD D++ +D + SGKMI + LLK
Sbjct: 414 PRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQVTDDTL--MEESGKMIFLMDLLKR 471
Query: 851 WHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTT-IASRQPLITRYNEDTSIFV 909
+G + L+FSQSRQ+L+I+E L+ + + L++DGT T + R+ I + ++ V
Sbjct: 472 LRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSV 531
Query: 910 FLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIE 969
FLLTT+VGG+G+ LT A RVVI+DP WNP+TD QA +R +RIGQK+ V VYRL+T GT+E
Sbjct: 532 FLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVE 591
Query: 970 EKIYHRQIFKQFLTNRVLKDPKQR-RFFKSNDLYELFTL 1007
EKIY RQ+FK L + + K R+F +L ELFT+
Sbjct: 592 EKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI 630
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 295 bits (754), Expect = 3e-79
Identities = 199/564 (35%), Positives = 290/564 (51%), Gaps = 44/564 (7%)
Query: 495 EGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKI 554
E +K+P + +L KYQQ GV WL L+ + GIL D+MGLGKT+Q I LAG +
Sbjct: 1254 ENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRA 1313
Query: 555 RTRGSNYRFEGLG-PTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRD 613
+ + E + P+++VCP T+ WV E + + LH TG T + ++
Sbjct: 1314 QEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIR--LQH 1371
Query: 614 VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIIL 673
H +++ SY +R D ++Y ILDEGH I+N ++ A KQ +RIIL
Sbjct: 1372 QVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIIL 1431
Query: 674 SGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 733
SG+P+QNN+ ELWSLFDF+ PG LGT F ++ PI + +S + +
Sbjct: 1432 SGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDA 1491
Query: 734 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRI----- 788
L + P+LLRRMK DV LP K Q +C L+ Q ++Y++F S+ +
Sbjct: 1492 LHRQVLPFLLRRMKEDVLQ--DLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVS 1549
Query: 789 ------------LNGEMQIFSGLIALRKICNHPDL--------FSGGPKNLKGLPDDELE 828
L +F L LRK+CNHP L F + L + + L
Sbjct: 1550 SATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKL-AVQNSSLH 1608
Query: 829 EDQFGYWKRSGKMIVVESLLKIWHKQ---------GQRVLLFSQSRQMLDILEVFL---R 876
+ Q + K ++++ L R+L+F Q + MLDI+E L
Sbjct: 1609 DIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPH 1668
Query: 877 AQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDW 936
TYL++DG+ R +++R+N D SI V LLTT VGGLG+NLTGA+ VV + DW
Sbjct: 1669 LPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDW 1728
Query: 937 NPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVL-KDPKQRRF 995
NP D QA +RA RIGQK+ V VYRL+T GT+EEKI Q FK + N V+ ++ +
Sbjct: 1729 NPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQS 1788
Query: 996 FKSNDLYELFTLTSPDASQSTETS 1019
++ L +LFTL ++ +TS
Sbjct: 1789 MGTDQLLDLFTLDKDGKAEKADTS 1812
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 289 bits (739), Expect = 2e-77
Identities = 205/622 (32%), Positives = 315/622 (50%), Gaps = 57/622 (9%)
Query: 379 EEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQ-EIDDDFFPSSGEEAEAA 437
E EE DD G + ++ YE K R + + Q E+ F + ++ +
Sbjct: 57 EMEEIFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTS 116
Query: 438 SVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEESDA--EFDE 495
+ K GR R DE + + R + +E L + S+ ++ F++
Sbjct: 117 PLK------MKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFED 170
Query: 496 GFKVPGFL-FKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKI 554
P ++ + KL YQ G+ WL L+ GIL DEMGLGKT+Q I+ L + +
Sbjct: 171 S---PSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKH--- 224
Query: 555 RTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDV 614
YR GP +++ P + +H W+ EF W P R L ++ +RDV
Sbjct: 225 ------YR-NIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGD---KEQRAAFVRDV 274
Query: 615 AHCH--GILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRII 672
+ +TSY + + +++W Y+++DE H+I+N + ++ ++F+T +R++
Sbjct: 275 LLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLL 334
Query: 673 LSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCAC 732
L+G+P+QNNL ELWSL +F+ P + F F +G K +
Sbjct: 335 LTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ--------KLVERLHM 386
Query: 733 VLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG- 791
VLR P+LLRR+K+DV+ SL P K E ++ L+ Q + Y + K++ ILN
Sbjct: 387 VLR----PFLLRRIKADVEKSL--PPKKEVKIYVGLSKMQREWYTRIL-MKDI-DILNSA 438
Query: 792 ----EMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESL 847
+M++ + L+ LRK CNHP LF G D L + SGKM+V++ L
Sbjct: 439 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTN-------SGKMVVLDKL 491
Query: 848 LKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSI 907
L +QG RVL+FSQ ++LDILE + + Y Y ++DG T RQ I YNE S
Sbjct: 492 LPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNST 551
Query: 908 -FVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAG 966
FVF+L+TR GGLG+NL A+ V++YD DWNP D QA +RA RIGQ K V V+R +T
Sbjct: 552 KFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDN 611
Query: 967 TIEEKIYHRQIFKQFLTNRVLK 988
T+EE+I R K L + V++
Sbjct: 612 TVEERIVERAEMKLRLDSIVIQ 633
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 287 bits (735), Expect = 5e-77
Identities = 190/566 (33%), Positives = 296/566 (52%), Gaps = 69/566 (12%)
Query: 494 DEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSK 553
D G +P + + L YQ+ G R+L+ + G ILGD+MGLGKT+Q+I+FLA + + K
Sbjct: 121 DNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKK 180
Query: 554 IRTRGS-----------NYRFEGLGPT-----VIVCPTTVMHQWVKEFHTWWPPFRVAIL 597
TR + + E L T +IV P +V++ W E TW FRV +L
Sbjct: 181 -GTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGY-FRVTVL 238
Query: 598 HETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAA 657
H K +LIR I +T+Y +RL D+++ +W VI+DE H+I+NP A
Sbjct: 239 HGN----RKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKAR 294
Query: 658 VTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYS 717
VT K + RI L+G+ +QNN++ELW + D+ PG LG+ F +QFS P+ G
Sbjct: 295 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRH 354
Query: 718 NASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQ 777
A+ ++ T K L ++ + LRR K+ +K LP K +++++C LTD Q VYQ
Sbjct: 355 TATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKD--QLPKKEDRMVYCSLTDFQKAVYQ 412
Query: 778 NFVDSKEVYRILNG--------------------------EMQIFSGLIALRKICNHPDL 811
+++++V IL + S L L+K+ NH L
Sbjct: 413 TVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVAL 472
Query: 812 FSGGPKN------LKGLPD-------DELEEDQFGYW------KRSGKMIVVESLLKIWH 852
+ +K + D D +++ + + K SGKM V++ LL
Sbjct: 473 LQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCR 532
Query: 853 KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLL 912
K +VLLFS S ++LD+L+ + A Y ++DG+T R ++ +N + + L+
Sbjct: 533 KNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLV 592
Query: 913 TTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 972
+T GGLG+N GAN VV++DP WNP+ D QA +RA+RIGQ + V V RL++ GT+EE +
Sbjct: 593 STMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIM 652
Query: 973 YHRQIFKQFLTNRVLKDPKQRRFFKS 998
Y RQI+KQ L V+ +R+F++
Sbjct: 653 YLRQIYKQQLHCVVVGSENAKRYFEA 678
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 282 bits (722), Expect = 1e-75
Identities = 203/646 (31%), Positives = 321/646 (49%), Gaps = 63/646 (9%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGT--------DYELKPLPKGGKR 413
+ EG + TE+ E++++ V + L+ +YE K KR
Sbjct: 35 QEEGAAAAATEATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKR 94
Query: 414 QKKVPVQ-EIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLR 472
+ + Q E+ F S +++ + + K+GR R DE + R
Sbjct: 95 FEFLLKQTELFAHFIQPSAQKSPTSPLN------MKLGRPRIKKDEKQSLISAGDYRHRR 148
Query: 473 LQDKEKRLKLEDDSEESDAEFDEGFKVPGFLFK--KLFKYQQTGVRWLWELHCQQAGGIL 530
+ +E L + + S+ F+V K L YQ G+ WL L+ GIL
Sbjct: 149 TEQEEDEELLSESRKTSNVCIR--FEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGIL 206
Query: 531 GDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWP 590
DEMGLGKT+Q IA L L + YR GP +++ P + +H W+ EF W P
Sbjct: 207 ADEMGLGKTLQTIALLGYLKH---------YR-NIPGPHMVLVPKSTLHNWMNEFKRWVP 256
Query: 591 PFRVAILHETGSYTHKKEKLIRD--VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEG 648
RV G + IRD + + +TSY + + ++ W Y+++DE
Sbjct: 257 SLRVICF--VGD-KDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEA 313
Query: 649 HKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFS 708
H+I+N + ++ ++F++ +R++L+G+P+QNNL ELW+L +F+ P + F F
Sbjct: 314 HRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD 373
Query: 709 VPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRL 768
+G K L + P+LLRR+K+DV+ SL P K E ++ L
Sbjct: 374 TKNCLGDQ------------KLVERLHAVLKPFLLRRIKTDVEKSL--PPKKEIKIYLGL 419
Query: 769 TDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKICNHPDLFSGGPKNLKGLP 823
+ Q + Y + K++ +LN +M++ + L+ LRK CNHP LF G
Sbjct: 420 SKMQREWYTKIL-MKDI-DVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTT 477
Query: 824 DDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYL 883
D+ + + SGKM+V++ LL +QG RVL+FSQ ++LDILE + + Y Y
Sbjct: 478 DEHIVSN-------SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYC 530
Query: 884 KMDGTTTIASRQPLITRYNE-DTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDT 942
++DG T R+ I +N ++S F+F+L+TR GGLG+NL A+ V++YD DWNP D
Sbjct: 531 RLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDL 590
Query: 943 QARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
QA +RA RIGQKK V V+RL+T T+EE+I R K L + V++
Sbjct: 591 QAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 636
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 276 bits (707), Expect = 8e-74
Identities = 193/548 (35%), Positives = 285/548 (52%), Gaps = 48/548 (8%)
Query: 499 VPGFLFKKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLSYSK 553
V L K L +Q+ GV++LWE + G I+ DEMGLGKT+Q I + L
Sbjct: 145 VDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL---- 200
Query: 554 IRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLI-- 611
R S + V+V P++++ W E W + + GS +KL
Sbjct: 201 --LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGF 258
Query: 612 ---RDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTP 668
R ILI SY RL + + VI DEGH+++N A T
Sbjct: 259 MNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS 318
Query: 669 HRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAY 728
R+++SG+P+QN+L E +SL F+ G LGT F + F +PI G + AS +
Sbjct: 319 RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGE 378
Query: 729 KCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV-DSKEVYR 787
+ L +N L+RR SD+ +S LP K EQV+ CRLT Q ++Y+ F+ +K
Sbjct: 379 ERLRELTSIVNRCLIRRT-SDI-LSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEE 436
Query: 788 ILNGEMQI--FSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQF---------GYWK 836
+L G+M + S + +L+K+CNHP L EED F GY
Sbjct: 437 LLEGKMSVSSLSSITSLKKLCNHPALIYDKCVE---------EEDGFVGALDLFPPGYSS 487
Query: 837 R------SGKMIVVESLLKIWH-KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 889
+ SGKM+V++ +L + + +V+L S Q LD+ E RA++Y Y+++DGT
Sbjct: 488 KALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTM 547
Query: 890 TIASRQPLITRYNEDTSI-FVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERA 948
+I R ++ R+N +S FVF+L+++ GG G+NL GANR+V++DPDWNP+ D QA R
Sbjct: 548 SIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARV 607
Query: 949 WRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQ-RRFFKSNDLYELFTL 1007
WR GQKK +YRLL+AGTIEEKI+ RQ K+ L++ V+ + + R F +L ELF L
Sbjct: 608 WRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFIL 667
Query: 1008 TSPDASQS 1015
S +
Sbjct: 668 DEASLSDT 675
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 276 bits (707), Expect = 8e-74
Identities = 193/548 (35%), Positives = 285/548 (52%), Gaps = 48/548 (8%)
Query: 499 VPGFLFKKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLSYSK 553
V L K L +Q+ GV++LWE + G I+ DEMGLGKT+Q I + L
Sbjct: 145 VDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL---- 200
Query: 554 IRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLI-- 611
R S + V+V P++++ W E W + + GS +KL
Sbjct: 201 --LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGF 258
Query: 612 ---RDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTP 668
R ILI SY RL + + VI DEGH+++N A T
Sbjct: 259 MNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTS 318
Query: 669 HRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAY 728
R+++SG+P+QN+L E +SL F+ G LGT F + F +PI G + AS +
Sbjct: 319 RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGE 378
Query: 729 KCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV-DSKEVYR 787
+ L +N L+RR SD+ +S LP K EQV+ CRLT Q ++Y+ F+ +K
Sbjct: 379 ERLRELTSIVNRCLIRRT-SDI-LSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEE 436
Query: 788 ILNGEMQI--FSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQF---------GYWK 836
+L G+M + S + +L+K+CNHP L EED F GY
Sbjct: 437 LLEGKMSVSSLSSITSLKKLCNHPALIYDKCVE---------EEDGFVGALDLFPPGYSS 487
Query: 837 R------SGKMIVVESLLKIWH-KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 889
+ SGKM+V++ +L + + +V+L S Q LD+ E RA++Y Y+++DGT
Sbjct: 488 KALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTM 547
Query: 890 TIASRQPLITRYNEDTSI-FVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERA 948
+I R ++ R+N +S FVF+L+++ GG G+NL GANR+V++DPDWNP+ D QA R
Sbjct: 548 SIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARV 607
Query: 949 WRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQ-RRFFKSNDLYELFTL 1007
WR GQKK +YRLL+AGTIEEKI+ RQ K+ L++ V+ + + R F +L ELF L
Sbjct: 608 WRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFIL 667
Query: 1008 TSPDASQS 1015
S +
Sbjct: 668 DEASLSDT 675
>gi|6912622 RAD54 homolog B [Homo sapiens]
Length = 910
Score = 274 bits (701), Expect = 4e-73
Identities = 184/536 (34%), Positives = 282/536 (52%), Gaps = 41/536 (7%)
Query: 502 FLFKKLFKYQQTGVRWLWELHCQ-----QAGGILGDEMGLGKTIQIIAFLAGLSYSKIRT 556
+L L +Q+ G+ +L+E + G IL DEMGLGKT+Q I+ + L +
Sbjct: 291 YLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTL-----QC 345
Query: 557 RGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAH 616
+G + T+IV P ++++ W KEF W R+ I T HK E+ I+ + +
Sbjct: 346 QGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIF--TVDQDHKVEEFIKSIFY 403
Query: 617 CHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGS 676
+LI SY + D I + +I DEGH+++N T A RIIL+G+
Sbjct: 404 --SVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGT 461
Query: 677 PMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRD 736
P+QN+L+E ++L DF+ PG LG+L + + + PI + +AS + + + A L
Sbjct: 462 PIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTC 521
Query: 737 TINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIF 796
++LRR + + L P K E V+FCR Q ++Y+ ++S+ V L G ++
Sbjct: 522 LTGLFILRRTQEIINKYL--PPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENS 579
Query: 797 SGLI---ALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYW-----------------K 836
LI AL+K+CNHP L K + + E++ Y K
Sbjct: 580 PHLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEK 639
Query: 837 RSGKMIVVESLLKIWH--KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASR 894
SGK+ V+ LL + H + ++V+L S Q L+IL+ + Y Y ++DG T I+ R
Sbjct: 640 ESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQR 699
Query: 895 QPLITRYN-EDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQ 953
Q ++ +N + +S F+FLL+++ GG+G+NL G + +++YD DWNP+TD QA R WR GQ
Sbjct: 700 QQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQ 759
Query: 954 KKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRV--LKDPKQRRFFKSNDLYELFTL 1007
K V +YRLLT GTIEEKIY RQI KQ L V L + F +L LFTL
Sbjct: 760 KYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 815
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 273 bits (699), Expect = 7e-73
Identities = 203/658 (30%), Positives = 321/658 (48%), Gaps = 75/658 (11%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGT--------DYELKPLPKGGKR 413
+ EG + TE+ E++++ V + L+ +YE K KR
Sbjct: 35 QEEGAAAAATEATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKR 94
Query: 414 QKKVPVQ-EIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLR 472
+ + Q E+ F S +++ + + K+GR R DE + R
Sbjct: 95 FEFLLKQTELFAHFIQPSAQKSPTSPLN------MKLGRPRIKKDEKQSLISAGDYRHRR 148
Query: 473 LQDKEKRLKLEDDSEESDAEFDEGFKVPGFLFK--KLFKYQQTGVRWLWELHCQQAGGIL 530
+ +E L + + S+ F+V K L YQ G+ WL L+ GIL
Sbjct: 149 TEQEEDEELLSESRKTSNVCIR--FEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGIL 206
Query: 531 GDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWP 590
DEMGLGKT+Q IA L L + YR GP +++ P + +H W+ EF W P
Sbjct: 207 ADEMGLGKTLQTIALLGYLKH---------YR-NIPGPHMVLVPKSTLHNWMNEFKRWVP 256
Query: 591 PFRVAILHETGSYTHKKEKLIRD--VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEG 648
RV G + IRD + + +TSY + + ++ W Y+++DE
Sbjct: 257 SLRVICF--VGD-KDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEA 313
Query: 649 HKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFS 708
H+I+N + ++ ++F++ +R++L+G+P+QNNL ELW+L +F+ P + F F
Sbjct: 314 HRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD 373
Query: 709 VPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRL 768
+G K L + P+LLRR+K+DV+ SL P K E ++ L
Sbjct: 374 TKNCLGDQ------------KLVERLHAVLKPFLLRRIKTDVEKSL--PPKKEIKIYLGL 419
Query: 769 TDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKICNHPDLFSGGPKNLKGLP 823
+ Q + Y + K++ +LN +M++ + L+ LRK CNHP LF G
Sbjct: 420 SKMQREWYTKIL-MKDI-DVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTT 477
Query: 824 DDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYL 883
D+ + + SGKM+V++ LL +QG RVL+FSQ ++LDILE + + Y Y
Sbjct: 478 DEHIVSN-------SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYC 530
Query: 884 KMDGTTTIASRQP------------LITRYNE-DTSIFVFLLTTRVGGLGVNLTGANRVV 930
++DG T R+ I +N ++S F+F+L+TR GGLG+NL A+ V+
Sbjct: 531 RLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVI 590
Query: 931 IYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
+YD DWNP D QA +RA RIGQKK V V+RL+T T+EE+I R K L + V++
Sbjct: 591 LYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 648
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 264 bits (674), Expect = 5e-70
Identities = 228/800 (28%), Positives = 365/800 (45%), Gaps = 92/800 (11%)
Query: 506 KLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEG 565
+L YQ G+ WL C+ IL DEMGLGKTIQ I+FL+ L + + +
Sbjct: 483 ELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFH----------QHQL 532
Query: 566 LGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILH---------ETGSYTHKKEKLIRDVAH 616
GP +IV P + + W +EF W P V + + H + K ++ A
Sbjct: 533 YGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA- 591
Query: 617 CHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGS 676
LIT+Y + + + +W ++ +DE H+++N ++ + F++ HR++++G+
Sbjct: 592 ----LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 647
Query: 677 PMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMG---GYSNASPVQVKTAYKCACV 733
P+QN+L+ELWSL FI P K F E F G GY +
Sbjct: 648 PLQNSLKELWSLLHFIMPEKFE----FWEDFEEDHGKGRENGYQS--------------- 688
Query: 734 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEM 793
L + P+LLRR+K DV+ SL P K EQ+L ++ Q K Y ++ ++ + G
Sbjct: 689 LHKVLEPFLLRRVKKDVEKSL--PAKVEQILRVEMSALQ-KQYYKWILTRNYKALAKGTR 745
Query: 794 QIFSGLI----ALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLK 849
SG + L+K CNH L +N + + +E + SGK+I+++ LL
Sbjct: 746 GSTSGFLNIVMELKKCCNHCYLIKPPEENER----ENGQEILLSLIRSSGKLILLDKLLT 801
Query: 850 IWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSI-F 908
++G RVL+FSQ +MLDIL +L + Y + ++DG+ R+ + +N D S F
Sbjct: 802 RLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF 861
Query: 909 VFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTI 968
FLL+TR GGLG+NL A+ VVI+D DWNP D QA+ RA RIGQKKQV +YRL+T GT+
Sbjct: 862 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 921
Query: 969 EEKIYHRQIFKQFLTNRVLK--DPKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAGTG 1026
EE+I R K L + V++ D R ++N ++ + E +AI
Sbjct: 922 EEEIIERAKKKMVLDHLVIQRMDTTGRTILENNS-----GRSNSNPFNKEELTAILKFGA 976
Query: 1027 SDVQTPKCHLKRRIQPAFGADHDVPKRKKFPASNISVNDATSSEEKSEAKGAEVNAVTSN 1086
D+ L+ D D R N V+ + + E S+ K A N T
Sbjct: 977 EDLFK---ELEGEESEPQEMDIDEILRLAETREN-EVSTSATDELLSQFKVA--NFATME 1030
Query: 1087 RSDPLKDDPHMSSNVTSNDRLGEETNAVSGPEELSVISGNGECSNSSGTGKTSMPSGDES 1146
+ L++ PH + + ++ +EL I +S+ +T+ D
Sbjct: 1031 DEEELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTN----DSD 1086
Query: 1147 IDEKLGLSYKRERPSQAQTEAFWENKQMENNFYK---HKSKTKHHSVAEEETLEKHLRPK 1203
D + +R S+++TE ++K+ + K + + AE K +
Sbjct: 1087 SDTESKRQAQRSSASESETEDSDDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIKAYKKF 1146
Query: 1204 QKPKNSKHC--RDAKFEGTRIPHLVK------------KRRYQKQDSENKSEAKEQSNDD 1249
P C RDA+ + L + + Y++Q EN SE K
Sbjct: 1147 GLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEGKGPGKRR 1206
Query: 1250 YVLEKLFKKSVGVHSVMKHD 1269
K+ V V S+++H+
Sbjct: 1207 GPTIKISGVQVNVKSIIQHE 1226
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 263 bits (671), Expect = 1e-69
Identities = 207/762 (27%), Positives = 354/762 (46%), Gaps = 89/762 (11%)
Query: 256 QEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPN 315
++++ R++M + G+ K L DQ K ++R A A + N +
Sbjct: 499 EKERMRRLMAEDEEGYRK-LIDQKK----------DRRLAYLLQQTDEYVANLTNLVWEH 547
Query: 316 KKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKARRPWESDMRPEAEGDSEGEESEYF 375
K+A+ +K++R ++ KK ++ A ES + P+ E E +
Sbjct: 548 KQAQAAKEKKKRRRRK-KKAEENA-------------EGGESALGPDGEPIDESSQMSDL 593
Query: 376 PTEEEEEEEDDEVEGAEADLSGDGTDY-ELKPLPKGGKRQKKVPVQEIDDDFFPSSGEEA 434
P + E + G EA + + E+ P G + + +E D D+ EE
Sbjct: 594 PVKVTHTETGKVLFGPEAPKASQLDAWLEMNP---GYEVAPRSDSEESDSDYEEEDEEEE 650
Query: 435 EAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEESDAEFD 494
+ E K+ D E+ ++ ++ + QD + ++ + S + +
Sbjct: 651 SSRQETE-----EKI--LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYT 703
Query: 495 EGFKVPGFLFKK--------LFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFL 546
+ + K+ L YQ G+ W+ L+ GIL DEMGLGKTIQ IA +
Sbjct: 704 VAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI 763
Query: 547 AGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHK 606
L K GP +I+ P + + W EF W P V + G+ +
Sbjct: 764 TYLMEHKRLN----------GPYLIIVPLSTLSNWTYEFDKWAPS--VVKISYKGTPAMR 811
Query: 607 KEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACK-QF 665
+ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N + +T +
Sbjct: 812 RSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 871
Query: 666 RTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVK 725
P RI+L+G+P+QN L ELW+L +F+ P + F + F+ P M G + +
Sbjct: 872 VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEE 929
Query: 726 TAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV----- 780
L + P+LLRR+K +V+ L P+K E V+ C ++ Q +Y++
Sbjct: 930 ETILIIRRLHKVLRPFLLRRLKKEVESQL--PEKVEYVIKCDMSALQKILYRHMQAKGIL 987
Query: 781 ---DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGY--- 834
S++ + G + + ++ LRKICNHP +F +E + GY
Sbjct: 988 LTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQH---------IEESFAEHLGYSNG 1038
Query: 835 -------WKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 887
++ SGK +++ +L RVLLF Q ++ I+E + + + YL++DG
Sbjct: 1039 VINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDG 1098
Query: 888 TTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARE 946
TT R L+ ++NE S F+FLL+TR GGLG+NL A+ VVI+D DWNP D QA++
Sbjct: 1099 TTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQD 1158
Query: 947 RAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
RA RIGQ+ +V V RL T ++EEKI +K + +V++
Sbjct: 1159 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
Score = 35.8 bits (81), Expect = 0.32
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQE 421
E E + E E E EE+EEE + E + + + + D + + KG KR + +
Sbjct: 1509 EEESEDESNEEE---EEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKP 1565
Query: 422 IDDDFFPSSGEEAEAASVGEGGG 444
+ DF S EE + EG G
Sbjct: 1566 VVSDF--DSDEEQDEREQSEGSG 1586
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 263 bits (671), Expect = 1e-69
Identities = 207/762 (27%), Positives = 354/762 (46%), Gaps = 89/762 (11%)
Query: 256 QEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPN 315
++++ R++M + G+ K L DQ K ++R A A + N +
Sbjct: 499 EKERMRRLMAEDEEGYRK-LIDQKK----------DRRLAYLLQQTDEYVANLTNLVWEH 547
Query: 316 KKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKARRPWESDMRPEAEGDSEGEESEYF 375
K+A+ +K++R ++ KK ++ A ES + P+ E E +
Sbjct: 548 KQAQAAKEKKKRRRRK-KKAEENA-------------EGGESALGPDGEPIDESSQMSDL 593
Query: 376 PTEEEEEEEDDEVEGAEADLSGDGTDY-ELKPLPKGGKRQKKVPVQEIDDDFFPSSGEEA 434
P + E + G EA + + E+ P G + + +E D D+ EE
Sbjct: 594 PVKVTHTETGKVLFGPEAPKASQLDAWLEMNP---GYEVAPRSDSEESDSDYEEEDEEEE 650
Query: 435 EAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEESDAEFD 494
+ E K+ D E+ ++ ++ + QD + ++ + S + +
Sbjct: 651 SSRQETE-----EKI--LLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYT 703
Query: 495 EGFKVPGFLFKK--------LFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFL 546
+ + K+ L YQ G+ W+ L+ GIL DEMGLGKTIQ IA +
Sbjct: 704 VAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI 763
Query: 547 AGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHK 606
L K GP +I+ P + + W EF W P V + G+ +
Sbjct: 764 TYLMEHKRLN----------GPYLIIVPLSTLSNWTYEFDKWAPS--VVKISYKGTPAMR 811
Query: 607 KEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACK-QF 665
+ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N + +T +
Sbjct: 812 RSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 871
Query: 666 RTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVK 725
P RI+L+G+P+QN L ELW+L +F+ P + F + F+ P M G + +
Sbjct: 872 VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEE 929
Query: 726 TAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFV----- 780
L + P+LLRR+K +V+ L P+K E V+ C ++ Q +Y++
Sbjct: 930 ETILIIRRLHKVLRPFLLRRLKKEVESQL--PEKVEYVIKCDMSALQKILYRHMQAKGIL 987
Query: 781 ---DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGY--- 834
S++ + G + + ++ LRKICNHP +F +E + GY
Sbjct: 988 LTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQH---------IEESFAEHLGYSNG 1038
Query: 835 -------WKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDG 887
++ SGK +++ +L RVLLF Q ++ I+E + + + YL++DG
Sbjct: 1039 VINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDG 1098
Query: 888 TTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARE 946
TT R L+ ++NE S F+FLL+TR GGLG+NL A+ VVI+D DWNP D QA++
Sbjct: 1099 TTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQD 1158
Query: 947 RAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
RA RIGQ+ +V V RL T ++EEKI +K + +V++
Sbjct: 1159 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
Score = 35.8 bits (81), Expect = 0.32
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQE 421
E E + E E E EE+EEE + E + + + + D + + KG KR + +
Sbjct: 1491 EEESEDESNEEE---EEEDEEESESEAKSVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKP 1547
Query: 422 IDDDFFPSSGEEAEAASVGEGGG 444
+ DF S EE + EG G
Sbjct: 1548 VVSDF--DSDEEQDEREQSEGSG 1568
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 261 bits (666), Expect = 5e-69
Identities = 180/543 (33%), Positives = 273/543 (50%), Gaps = 61/543 (11%)
Query: 476 KEKRLKLEDDSEESDAEFDEGFKV---PGFLFKK---LFKYQQTGVRWLWELHCQQAGGI 529
K+K+ +L+ D S D K P F+ L YQ G+ WL Q I
Sbjct: 699 KKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTI 758
Query: 530 LGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWW 589
L DEMGLGKTIQ I FL L Y + T+G P ++ P + + W +EF W
Sbjct: 759 LADEMGLGKTIQTIVFLYSL-YKEGHTKG---------PFLVSAPLSTIINWEREFQMWA 808
Query: 590 PPFRV----------AILHETGSYTH--------KKEKLIRDVAHCHGILITSYSYIRLM 631
P F V AI+ E K K+ R+ +L+TSY I +
Sbjct: 809 PKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITID 868
Query: 632 QDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDF 691
Q + W +++DE H+++N + ++ H+++L+G+P+QNNL EL+ L +F
Sbjct: 869 QAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNF 928
Query: 692 IFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK 751
+ P + L F+E+F+ + Q+K L D + P++LRR+K+DV
Sbjct: 929 LTPERFNNLEGFLEEFA--------DISKEDQIKK-------LHDLLGPHMLRRLKADVF 973
Query: 752 MSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKIC 806
++ P K E ++ L+ Q K Y+ + + LN ++ + + ++ L+K C
Sbjct: 974 KNM--PAKTELIVRVELSPMQKKYYKYILTRN--FEALNSRGGGNQVSLLNIMMDLKKCC 1029
Query: 807 NHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQ 866
NHP LF LP E K SGK+++++ +L+ +QG RVL+FSQ +
Sbjct: 1030 NHPYLFPVAAMESPKLPSGAYEGGAL--IKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTK 1087
Query: 867 MLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED-TSIFVFLLTTRVGGLGVNLTG 925
MLD+LE FL + Y Y ++DG T A RQ I R+N F FLL+TR GGLG+NL
Sbjct: 1088 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1147
Query: 926 ANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNR 985
A+ V+I+D DWNP D QA RA RIGQ +V +YR +T ++EE+I K LT+
Sbjct: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1207
Query: 986 VLK 988
V++
Sbjct: 1208 VVR 1210
Score = 32.7 bits (73), Expect = 2.7
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 34/156 (21%)
Query: 290 CNKRAARKAPA--------PVTPPAPVQNKNKPNKKARVLSKKEERLKKHI------KKL 335
C + A AP+ P+ + KP K +R+ K E ++L
Sbjct: 1551 CTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERL 1610
Query: 336 QKRALQFQGKV-GLPKARRPWESDMRPEAEGDSEGEESEYFPTEEEEE------EEDDEV 388
+ R + + +V G+P P P GD E +E P E EE E +
Sbjct: 1611 EPRKIPLEDEVPGVPGEMEP-----EPGYRGDREKSATESTPGERGEEKPLDGQEHRERP 1665
Query: 389 EGAEADLSGDGT---DYELKPLPK-----GGKRQKK 416
EG DL D EL+P P+ G+R++K
Sbjct: 1666 EGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEK 1701
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 261 bits (666), Expect = 5e-69
Identities = 180/543 (33%), Positives = 273/543 (50%), Gaps = 61/543 (11%)
Query: 476 KEKRLKLEDDSEESDAEFDEGFKV---PGFLFKK---LFKYQQTGVRWLWELHCQQAGGI 529
K+K+ +L+ D S D K P F+ L YQ G+ WL Q I
Sbjct: 699 KKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTI 758
Query: 530 LGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWW 589
L DEMGLGKTIQ I FL L Y + T+G P ++ P + + W +EF W
Sbjct: 759 LADEMGLGKTIQTIVFLYSL-YKEGHTKG---------PFLVSAPLSTIINWEREFQMWA 808
Query: 590 PPFRV----------AILHETGSYTH--------KKEKLIRDVAHCHGILITSYSYIRLM 631
P F V AI+ E K K+ R+ +L+TSY I +
Sbjct: 809 PKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITID 868
Query: 632 QDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDF 691
Q + W +++DE H+++N + ++ H+++L+G+P+QNNL EL+ L +F
Sbjct: 869 QAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNF 928
Query: 692 IFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK 751
+ P + L F+E+F+ + Q+K L D + P++LRR+K+DV
Sbjct: 929 LTPERFNNLEGFLEEFA--------DISKEDQIKK-------LHDLLGPHMLRRLKADVF 973
Query: 752 MSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKIC 806
++ P K E ++ L+ Q K Y+ + + LN ++ + + ++ L+K C
Sbjct: 974 KNM--PAKTELIVRVELSPMQKKYYKYILTRN--FEALNSRGGGNQVSLLNIMMDLKKCC 1029
Query: 807 NHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQ 866
NHP LF LP E K SGK+++++ +L+ +QG RVL+FSQ +
Sbjct: 1030 NHPYLFPVAAMESPKLPSGAYEGGAL--IKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTK 1087
Query: 867 MLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED-TSIFVFLLTTRVGGLGVNLTG 925
MLD+LE FL + Y Y ++DG T A RQ I R+N F FLL+TR GGLG+NL
Sbjct: 1088 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1147
Query: 926 ANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNR 985
A+ V+I+D DWNP D QA RA RIGQ +V +YR +T ++EE+I K LT+
Sbjct: 1148 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1207
Query: 986 VLK 988
V++
Sbjct: 1208 VVR 1210
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 261 bits (666), Expect = 5e-69
Identities = 180/543 (33%), Positives = 273/543 (50%), Gaps = 61/543 (11%)
Query: 476 KEKRLKLEDDSEESDAEFDEGFKV---PGFLFKK---LFKYQQTGVRWLWELHCQQAGGI 529
K+K+ +L+ D S D K P F+ L YQ G+ WL Q I
Sbjct: 758 KKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTI 817
Query: 530 LGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWW 589
L DEMGLGKTIQ I FL L Y + T+G P ++ P + + W +EF W
Sbjct: 818 LADEMGLGKTIQTIVFLYSL-YKEGHTKG---------PFLVSAPLSTIINWEREFQMWA 867
Query: 590 PPFRV----------AILHETGSYTH--------KKEKLIRDVAHCHGILITSYSYIRLM 631
P F V AI+ E K K+ R+ +L+TSY I +
Sbjct: 868 PKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITID 927
Query: 632 QDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDF 691
Q + W +++DE H+++N + ++ H+++L+G+P+QNNL EL+ L +F
Sbjct: 928 QAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNF 987
Query: 692 IFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK 751
+ P + L F+E+F+ + Q+K L D + P++LRR+K+DV
Sbjct: 988 LTPERFNNLEGFLEEFA--------DISKEDQIKK-------LHDLLGPHMLRRLKADVF 1032
Query: 752 MSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKIC 806
++ P K E ++ L+ Q K Y+ + + LN ++ + + ++ L+K C
Sbjct: 1033 KNM--PAKTELIVRVELSPMQKKYYKYILTRN--FEALNSRGGGNQVSLLNIMMDLKKCC 1088
Query: 807 NHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQ 866
NHP LF LP E K SGK+++++ +L+ +QG RVL+FSQ +
Sbjct: 1089 NHPYLFPVAAMESPKLPSGAYEGGAL--IKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTK 1146
Query: 867 MLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED-TSIFVFLLTTRVGGLGVNLTG 925
MLD+LE FL + Y Y ++DG T A RQ I R+N F FLL+TR GGLG+NL
Sbjct: 1147 MLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLAT 1206
Query: 926 ANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNR 985
A+ V+I+D DWNP D QA RA RIGQ +V +YR +T ++EE+I K LT+
Sbjct: 1207 ADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHL 1266
Query: 986 VLK 988
V++
Sbjct: 1267 VVR 1269
Score = 32.7 bits (73), Expect = 2.7
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 34/156 (21%)
Query: 290 CNKRAARKAPA--------PVTPPAPVQNKNKPNKKARVLSKKEERLKKHI------KKL 335
C + A AP+ P+ + KP K +R+ K E ++L
Sbjct: 1610 CTSKPATPAPSEKGEGIRTPLEKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERL 1669
Query: 336 QKRALQFQGKV-GLPKARRPWESDMRPEAEGDSEGEESEYFPTEEEEE------EEDDEV 388
+ R + + +V G+P P P GD E +E P E EE E +
Sbjct: 1670 EPRKIPLEDEVPGVPGEMEP-----EPGYRGDREKSATESTPGERGEEKPLDGQEHRERP 1724
Query: 389 EGAEADLSGDGT---DYELKPLPK-----GGKRQKK 416
EG DL D EL+P P+ G+R++K
Sbjct: 1725 EGETGDLGKREDVKGDRELRPGPRDEPRSNGRREEK 1760
Score = 31.2 bits (69), Expect = 7.8
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 357 SDMRPEAEGDSEGEESEYFPTEEEE--EEEDDEVEGAEAD 394
S +R E E + E SE EEEE EEE++EVE A+ D
Sbjct: 3 SPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADED 42
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 261 bits (666), Expect = 5e-69
Identities = 180/548 (32%), Positives = 277/548 (50%), Gaps = 70/548 (12%)
Query: 477 EKRLKLEDDSEESDAE---------FDEGFKVPGFLFKK---LFKYQQTGVRWLWELHCQ 524
+K KL DD +E + FD K P ++ L YQ G+ WL Q
Sbjct: 661 KKGKKLRDDKQEKPPDTPIVDPTVKFD---KQPWYIDSTGGTLHPYQLEGLNWLRFSWAQ 717
Query: 525 QAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKE 584
IL DEMGLGKT+Q I FL L Y + ++G P ++ P + + W +E
Sbjct: 718 GTDTILADEMGLGKTVQTIVFLYSL-YKEGHSKG---------PYLVSAPLSTIINWERE 767
Query: 585 FHTWWPPFRVAIL---HETGSYTHKKEKLIRDVAHCHG---------------ILITSYS 626
F W P F V E+ S + E D A G +L+TSY
Sbjct: 768 FEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYE 827
Query: 627 YIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELW 686
I + Q + +W +++DE H+++N + ++ ++++L+G+P+QNNL EL+
Sbjct: 828 LITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELF 887
Query: 687 SLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRM 746
L +F+ P + L F+E+F+ + Q+K L D + P++LRR+
Sbjct: 888 HLLNFLTPERFNNLEGFLEEFA--------DISKEDQIKK-------LHDLLGPHMLRRL 932
Query: 747 KSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIA 801
K+DV ++ P K E ++ L+ Q K Y+ F+ ++ + LN ++ + + ++
Sbjct: 933 KADVFKNM--PAKTELIVRVELSQMQKKYYK-FILTRN-FEALNSKGGGNQVSLLNIMMD 988
Query: 802 LRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLF 861
L+K CNHP LF LP+ D K SGK+++++ +LK +G RVL+F
Sbjct: 989 LKKCCNHPYLFPVAAVEAPVLPNGSY--DGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIF 1046
Query: 862 SQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED-TSIFVFLLTTRVGGLG 920
SQ +MLD+LE FL + Y Y ++DG T RQ I R+N F FLL+TR GGLG
Sbjct: 1047 SQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLG 1106
Query: 921 VNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQ 980
+NL A+ V+IYD DWNP D QA RA RIGQ K+V +YR +T ++EE+I K
Sbjct: 1107 INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKM 1166
Query: 981 FLTNRVLK 988
LT+ V++
Sbjct: 1167 MLTHLVVR 1174
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 259 bits (661), Expect = 2e-68
Identities = 248/972 (25%), Positives = 414/972 (42%), Gaps = 112/972 (11%)
Query: 358 DMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKV 417
+M P E + E EEEEEEE+++ + A+ P + +KK+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQ-------------PPTLPVEEKKKI 690
Query: 418 PVQEIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDY-YKQRLRRWNKLRLQDK 476
P + DD E +A + E + D D++Y Q L R
Sbjct: 691 PDPDSDDV------SEVDARHIIENA---------KQDVDDEYGVSQALARG-------- 727
Query: 477 EKRLKLEDDSEESDAEFDEGFKVPGFLFKKLFK-YQQTGVRWLWELHCQQAGGILGDEMG 535
L+ + A + K + + K YQ G+ WL L+ GIL DEMG
Sbjct: 728 -----LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMG 782
Query: 536 LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVA 595
LGKTIQ IA + L K GP +I+ P + + W EF W P V
Sbjct: 783 LGKTIQTIALITYLMEHKRIN----------GPFLIIVPLSTLSNWAYEFDKWAPS--VV 830
Query: 596 ILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPN 655
+ GS ++ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N +
Sbjct: 831 KVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH 890
Query: 656 AAVTLACK-QFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMG 714
+T + P R++L+G+P+QN L ELW+L +F+ P + F + F+ P M
Sbjct: 891 CKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMT 950
Query: 715 GYSNASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 772
G V + + L + P+LLRR+K +V+ L P+K E V+ C ++ Q
Sbjct: 951 G----EKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL--PEKVEYVIKCDMSALQ 1004
Query: 773 HKVYQNFV--------DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLK---G 821
+Y++ S++ + G + + ++ LRKICNHP +F ++ G
Sbjct: 1005 RVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLG 1064
Query: 822 LPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYT 881
++ ++ SGK +++ +L +VLLF Q ++ I+E + + +
Sbjct: 1065 FTGGIVQG--LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 882 YLKMDGTTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940
YL++DGTT R L+ +NE S F+FLL+TR GGLG+NL A+ V+I+D DWNP
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK----DPKQRRFF 996
D QA++RA RIGQ+ +V V RL T ++EEKI +K + +V++ D K
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 997 KSNDLYELFTLTSPDASQSTET---SAIFAGTGSDVQTPKCHLKRRIQPAFGADHDVPKR 1053
+ L + D S+ T SA FA T L+ +P + +VP
Sbjct: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLE---EPPLKEEDEVPDD 1299
Query: 1054 KKFPASNISVNDATSSEEKSEAKGAEVNAVTSNRSDPLKDDPHMSSNVTSNDRLGEETNA 1113
+ + + + A R L ++ + S + +D E
Sbjct: 1300 ETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDD---AEVER 1356
Query: 1114 VSGPEELSVISGNGECSNSSGTGKTSMPSGDESIDEKLGLSYKRERPSQAQTEAFWENKQ 1173
++ EE + G G +S+ EK L + + Q
Sbjct: 1357 LTCEEEEEKMFGRGSRHRKE-------VDYSDSLTEKQWLKKITGKDIHDTASSVARGLQ 1409
Query: 1174 MEN--NFYKHKSKTKHHSVAEEETLEKHLRPKQKPKNSKHCRDAKFEGTRIPHLVKKRR- 1230
+ F SK EE +E+ +R K+ + K DA G+ P + R
Sbjct: 1410 FQRGLQFCTRASKAIEEGTLEE--IEEEVRQKKSSRKRKRDSDA---GSSTPTTSTRSRD 1464
Query: 1231 ----YQKQDSENKSEAKEQSNDDYVLEKLFKKSVGVHSVMKHDAIMDGASPDYVLVEAEA 1286
+KQ + A++ S + L K KK V +V+K+ G V ++ +
Sbjct: 1465 KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKI--VDAVIKYKDSSSGRQLSEVFIQLPS 1522
Query: 1287 NRVAQDALKALR 1298
+ + + +R
Sbjct: 1523 RKELPEYYELIR 1534
Score = 35.0 bits (79), Expect = 0.54
Identities = 33/87 (37%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGD-GTDYELKPLPKGGKRQ-----K 415
E E DSEGEESE EEE EEE E E + G + + KGG+R+ +
Sbjct: 1597 EKEDDSEGEESE---EEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR 1653
Query: 416 KVPVQEIDDDFFPSSGEEAEAASVGEG 442
PV DD S EE E G G
Sbjct: 1654 AKPVVSDDD-----SEEEQEEDRSGSG 1675
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 257 bits (657), Expect = 5e-68
Identities = 201/692 (29%), Positives = 324/692 (46%), Gaps = 85/692 (12%)
Query: 358 DMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKV 417
+M P E + E EEEEEEE+++ + A+ P + +KK+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQ-------------PPTLPVEEKKKI 690
Query: 418 PVQEIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDY-YKQRLRRWNKLRLQDK 476
P + DD E +A + E + D D++Y Q L R
Sbjct: 691 PDPDSDDV------SEVDARHIIENA---------KQDVDDEYGVSQALARG-------- 727
Query: 477 EKRLKLEDDSEESDAEFDEGFKVPGFLFKKLFK-YQQTGVRWLWELHCQQAGGILGDEMG 535
L+ + A + K + + K YQ G+ WL L+ GIL DEMG
Sbjct: 728 -----LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMG 782
Query: 536 LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVA 595
LGKTIQ IA + L K GP +I+ P + + W EF W P V
Sbjct: 783 LGKTIQTIALITYLMEHKRIN----------GPFLIIVPLSTLSNWAYEFDKWAPS--VV 830
Query: 596 ILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPN 655
+ GS ++ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N +
Sbjct: 831 KVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH 890
Query: 656 AAVTLACK-QFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMG 714
+T + P R++L+G+P+QN L ELW+L +F+ P + F + F+ P M
Sbjct: 891 CKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMT 950
Query: 715 GYSNASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 772
G V + + L + P+LLRR+K +V+ L P+K E V+ C ++ Q
Sbjct: 951 G----EKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL--PEKVEYVIKCDMSALQ 1004
Query: 773 HKVYQNFV--------DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLK---G 821
+Y++ S++ + G + + ++ LRKICNHP +F ++ G
Sbjct: 1005 RVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLG 1064
Query: 822 LPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYT 881
++ ++ SGK +++ +L +VLLF Q ++ I+E + + +
Sbjct: 1065 FTGGIVQG--LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 882 YLKMDGTTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940
YL++DGTT R L+ +NE S F+FLL+TR GGLG+NL A+ V+I+D DWNP
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK----DPKQRRFF 996
D QA++RA RIGQ+ +V V RL T ++EEKI +K + +V++ D K
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 997 KSNDLYELFTLTSPDASQSTET---SAIFAGT 1025
+ L + D S+ T SA FA T
Sbjct: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHT 1274
Score = 35.0 bits (79), Expect = 0.54
Identities = 33/87 (37%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGD-GTDYELKPLPKGGKRQ-----K 415
E E DSEGEESE EEE EEE E E + G + + KGG+R+ +
Sbjct: 1565 EKEDDSEGEESE---EEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR 1621
Query: 416 KVPVQEIDDDFFPSSGEEAEAASVGEG 442
PV DD S EE E G G
Sbjct: 1622 AKPVVSDDD-----SEEEQEEDRSGSG 1643
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 257 bits (657), Expect = 5e-68
Identities = 201/692 (29%), Positives = 324/692 (46%), Gaps = 85/692 (12%)
Query: 358 DMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKV 417
+M P E + E EEEEEEE+++ + A+ P + +KK+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQ-------------PPTLPVEEKKKI 690
Query: 418 PVQEIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDY-YKQRLRRWNKLRLQDK 476
P + DD E +A + E + D D++Y Q L R
Sbjct: 691 PDPDSDDV------SEVDARHIIENA---------KQDVDDEYGVSQALARG-------- 727
Query: 477 EKRLKLEDDSEESDAEFDEGFKVPGFLFKKLFK-YQQTGVRWLWELHCQQAGGILGDEMG 535
L+ + A + K + + K YQ G+ WL L+ GIL DEMG
Sbjct: 728 -----LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMG 782
Query: 536 LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVA 595
LGKTIQ IA + L K GP +I+ P + + W EF W P V
Sbjct: 783 LGKTIQTIALITYLMEHKRIN----------GPFLIIVPLSTLSNWAYEFDKWAPS--VV 830
Query: 596 ILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPN 655
+ GS ++ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N +
Sbjct: 831 KVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH 890
Query: 656 AAVTLACK-QFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMG 714
+T + P R++L+G+P+QN L ELW+L +F+ P + F + F+ P M
Sbjct: 891 CKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMT 950
Query: 715 GYSNASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 772
G V + + L + P+LLRR+K +V+ L P+K E V+ C ++ Q
Sbjct: 951 G----EKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL--PEKVEYVIKCDMSALQ 1004
Query: 773 HKVYQNFV--------DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLK---G 821
+Y++ S++ + G + + ++ LRKICNHP +F ++ G
Sbjct: 1005 RVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLG 1064
Query: 822 LPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYT 881
++ ++ SGK +++ +L +VLLF Q ++ I+E + + +
Sbjct: 1065 FTGGIVQG--LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 882 YLKMDGTTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940
YL++DGTT R L+ +NE S F+FLL+TR GGLG+NL A+ V+I+D DWNP
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK----DPKQRRFF 996
D QA++RA RIGQ+ +V V RL T ++EEKI +K + +V++ D K
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
Query: 997 KSNDLYELFTLTSPDASQSTET---SAIFAGT 1025
+ L + D S+ T SA FA T
Sbjct: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHT 1274
Score = 35.0 bits (79), Expect = 0.54
Identities = 33/87 (37%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGD-GTDYELKPLPKGGKRQ-----K 415
E E DSEGEESE EEE EEE E E + G + + KGG+R+ +
Sbjct: 1565 EKEDDSEGEESE---EEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR 1621
Query: 416 KVPVQEIDDDFFPSSGEEAEAASVGEG 442
PV DD S EE E G G
Sbjct: 1622 AKPVVSDDD-----SEEEQEEDRSGSG 1643
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 257 bits (656), Expect = 7e-68
Identities = 190/648 (29%), Positives = 310/648 (47%), Gaps = 78/648 (12%)
Query: 358 DMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKV 417
+M P E + E EEEEEEE+++ + A+ P + +KK+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQ-------------PPTLPVEEKKKI 690
Query: 418 PVQEIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDY-YKQRLRRWNKLRLQDK 476
P + DD E +A + E + D D++Y Q L R
Sbjct: 691 PDPDSDDV------SEVDARHIIENA---------KQDVDDEYGVSQALARG-------- 727
Query: 477 EKRLKLEDDSEESDAEFDEGFKVPGFLFKKLFK-YQQTGVRWLWELHCQQAGGILGDEMG 535
L+ + A + K + + K YQ G+ WL L+ GIL DEMG
Sbjct: 728 -----LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMG 782
Query: 536 LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVA 595
LGKTIQ IA + L K GP +I+ P + + W EF W P V
Sbjct: 783 LGKTIQTIALITYLMEHKRIN----------GPFLIIVPLSTLSNWAYEFDKWAPS--VV 830
Query: 596 ILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPN 655
+ GS ++ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N +
Sbjct: 831 KVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH 890
Query: 656 AAVTLACK-QFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMG 714
+T + P R++L+G+P+QN L ELW+L +F+ P + F + F+ P M
Sbjct: 891 CKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMT 950
Query: 715 GYSNASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 772
G V + + L + P+LLRR+K +V+ L P+K E V+ C ++ Q
Sbjct: 951 G----EKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL--PEKVEYVIKCDMSALQ 1004
Query: 773 HKVYQNFV--------DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLK---G 821
+Y++ S++ + G + + ++ LRKICNHP +F ++ G
Sbjct: 1005 RVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLG 1064
Query: 822 LPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYT 881
++ ++ SGK +++ +L +VLLF Q ++ I+E + + +
Sbjct: 1065 FTGGIVQG--LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 882 YLKMDGTTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940
YL++DGTT R L+ +NE S F+FLL+TR GGLG+NL A+ V+I+D DWNP
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
D QA++RA RIGQ+ +V V RL T ++EEKI +K + +V++
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1230
Score = 35.0 bits (79), Expect = 0.54
Identities = 33/87 (37%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGD-GTDYELKPLPKGGKRQ-----K 415
E E DSEGEESE EEE EEE E E + G + + KGG+R+ +
Sbjct: 1531 EKEDDSEGEESE---EEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR 1587
Query: 416 KVPVQEIDDDFFPSSGEEAEAASVGEG 442
PV DD S EE E G G
Sbjct: 1588 AKPVVSDDD-----SEEEQEEDRSGSG 1609
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 257 bits (656), Expect = 7e-68
Identities = 190/648 (29%), Positives = 310/648 (47%), Gaps = 78/648 (12%)
Query: 358 DMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKV 417
+M P E + E EEEEEEE+++ + A+ P + +KK+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQ-------------PPTLPVEEKKKI 690
Query: 418 PVQEIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDY-YKQRLRRWNKLRLQDK 476
P + DD E +A + E + D D++Y Q L R
Sbjct: 691 PDPDSDDV------SEVDARHIIENA---------KQDVDDEYGVSQALARG-------- 727
Query: 477 EKRLKLEDDSEESDAEFDEGFKVPGFLFKKLFK-YQQTGVRWLWELHCQQAGGILGDEMG 535
L+ + A + K + + K YQ G+ WL L+ GIL DEMG
Sbjct: 728 -----LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMG 782
Query: 536 LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVA 595
LGKTIQ IA + L K GP +I+ P + + W EF W P V
Sbjct: 783 LGKTIQTIALITYLMEHKRIN----------GPFLIIVPLSTLSNWAYEFDKWAPS--VV 830
Query: 596 ILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPN 655
+ GS ++ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N +
Sbjct: 831 KVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH 890
Query: 656 AAVTLACK-QFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMG 714
+T + P R++L+G+P+QN L ELW+L +F+ P + F + F+ P M
Sbjct: 891 CKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMT 950
Query: 715 GYSNASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 772
G V + + L + P+LLRR+K +V+ L P+K E V+ C ++ Q
Sbjct: 951 G----EKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL--PEKVEYVIKCDMSALQ 1004
Query: 773 HKVYQNFV--------DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLK---G 821
+Y++ S++ + G + + ++ LRKICNHP +F ++ G
Sbjct: 1005 RVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLG 1064
Query: 822 LPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYT 881
++ ++ SGK +++ +L +VLLF Q ++ I+E + + +
Sbjct: 1065 FTGGIVQG--LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 882 YLKMDGTTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940
YL++DGTT R L+ +NE S F+FLL+TR GGLG+NL A+ V+I+D DWNP
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
D QA++RA RIGQ+ +V V RL T ++EEKI +K + +V++
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1230
Score = 35.0 bits (79), Expect = 0.54
Identities = 33/87 (37%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGD-GTDYELKPLPKGGKRQ-----K 415
E E DSEGEESE EEE EEE E E + G + + KGG+R+ +
Sbjct: 1532 EKEDDSEGEESE---EEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR 1588
Query: 416 KVPVQEIDDDFFPSSGEEAEAASVGEG 442
PV DD S EE E G G
Sbjct: 1589 AKPVVSDDD-----SEEEQEEDRSGSG 1610
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 257 bits (656), Expect = 7e-68
Identities = 190/648 (29%), Positives = 310/648 (47%), Gaps = 78/648 (12%)
Query: 358 DMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKV 417
+M P E + E EEEEEEE+++ + A+ P + +KK+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQ-------------PPTLPVEEKKKI 690
Query: 418 PVQEIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDY-YKQRLRRWNKLRLQDK 476
P + DD E +A + E + D D++Y Q L R
Sbjct: 691 PDPDSDDV------SEVDARHIIENA---------KQDVDDEYGVSQALARG-------- 727
Query: 477 EKRLKLEDDSEESDAEFDEGFKVPGFLFKKLFK-YQQTGVRWLWELHCQQAGGILGDEMG 535
L+ + A + K + + K YQ G+ WL L+ GIL DEMG
Sbjct: 728 -----LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMG 782
Query: 536 LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVA 595
LGKTIQ IA + L K GP +I+ P + + W EF W P V
Sbjct: 783 LGKTIQTIALITYLMEHKRIN----------GPFLIIVPLSTLSNWAYEFDKWAPS--VV 830
Query: 596 ILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPN 655
+ GS ++ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N +
Sbjct: 831 KVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH 890
Query: 656 AAVTLACK-QFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMG 714
+T + P R++L+G+P+QN L ELW+L +F+ P + F + F+ P M
Sbjct: 891 CKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMT 950
Query: 715 GYSNASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 772
G V + + L + P+LLRR+K +V+ L P+K E V+ C ++ Q
Sbjct: 951 G----EKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL--PEKVEYVIKCDMSALQ 1004
Query: 773 HKVYQNFV--------DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLK---G 821
+Y++ S++ + G + + ++ LRKICNHP +F ++ G
Sbjct: 1005 RVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLG 1064
Query: 822 LPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYT 881
++ ++ SGK +++ +L +VLLF Q ++ I+E + + +
Sbjct: 1065 FTGGIVQG--LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 882 YLKMDGTTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940
YL++DGTT R L+ +NE S F+FLL+TR GGLG+NL A+ V+I+D DWNP
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
D QA++RA RIGQ+ +V V RL T ++EEKI +K + +V++
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1230
Score = 35.0 bits (79), Expect = 0.54
Identities = 33/87 (37%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGD-GTDYELKPLPKGGKRQ-----K 415
E E DSEGEESE EEE EEE E E + G + + KGG+R+ +
Sbjct: 1534 EKEDDSEGEESE---EEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR 1590
Query: 416 KVPVQEIDDDFFPSSGEEAEAASVGEG 442
PV DD S EE E G G
Sbjct: 1591 AKPVVSDDD-----SEEEQEEDRSGSG 1612
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 257 bits (656), Expect = 7e-68
Identities = 190/648 (29%), Positives = 310/648 (47%), Gaps = 78/648 (12%)
Query: 358 DMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKV 417
+M P E + E EEEEEEE+++ + A+ P + +KK+
Sbjct: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQ-------------PPTLPVEEKKKI 690
Query: 418 PVQEIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDY-YKQRLRRWNKLRLQDK 476
P + DD E +A + E + D D++Y Q L R
Sbjct: 691 PDPDSDDV------SEVDARHIIENA---------KQDVDDEYGVSQALARG-------- 727
Query: 477 EKRLKLEDDSEESDAEFDEGFKVPGFLFKKLFK-YQQTGVRWLWELHCQQAGGILGDEMG 535
L+ + A + K + + K YQ G+ WL L+ GIL DEMG
Sbjct: 728 -----LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMG 782
Query: 536 LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVA 595
LGKTIQ IA + L K GP +I+ P + + W EF W P V
Sbjct: 783 LGKTIQTIALITYLMEHKRIN----------GPFLIIVPLSTLSNWAYEFDKWAPS--VV 830
Query: 596 ILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPN 655
+ GS ++ + + + +L+T+Y YI + +++ W Y+I+DEGH+++N +
Sbjct: 831 KVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH 890
Query: 656 AAVTLACK-QFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMG 714
+T + P R++L+G+P+QN L ELW+L +F+ P + F + F+ P M
Sbjct: 891 CKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMT 950
Query: 715 GYSNASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQ 772
G V + + L + P+LLRR+K +V+ L P+K E V+ C ++ Q
Sbjct: 951 G----EKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL--PEKVEYVIKCDMSALQ 1004
Query: 773 HKVYQNFV--------DSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLK---G 821
+Y++ S++ + G + + ++ LRKICNHP +F ++ G
Sbjct: 1005 RVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLG 1064
Query: 822 LPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYT 881
++ ++ SGK +++ +L +VLLF Q ++ I+E + + +
Sbjct: 1065 FTGGIVQG--LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
Query: 882 YLKMDGTTTIASRQPLITRYNEDTS-IFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940
YL++DGTT R L+ +NE S F+FLL+TR GGLG+NL A+ V+I+D DWNP
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
D QA++RA RIGQ+ +V V RL T ++EEKI +K + +V++
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1230
Score = 35.0 bits (79), Expect = 0.54
Identities = 33/87 (37%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGD-GTDYELKPLPKGGKRQ-----K 415
E E DSEGEESE EEE EEE E E + G + + KGG+R+ +
Sbjct: 1535 EKEDDSEGEESE---EEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR 1591
Query: 416 KVPVQEIDDDFFPSSGEEAEAASVGEG 442
PV DD S EE E G G
Sbjct: 1592 AKPVVSDDD-----SEEEQEEDRSGSG 1613
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 256 bits (655), Expect = 9e-68
Identities = 167/500 (33%), Positives = 260/500 (52%), Gaps = 58/500 (11%)
Query: 506 KLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEG 565
+L YQ G+ WL C+ IL DEMGLGKTIQ I+FL NY F
Sbjct: 480 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFL-------------NYLFHE 526
Query: 566 ---LGPTVIVCPTTVMHQWVKEFHTWWPPFRVAI---------LHETGSYTHKKEKLIRD 613
GP ++V P + + W +E TW + + T +TH + K ++
Sbjct: 527 HQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLK- 585
Query: 614 VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIIL 673
IL+T+Y + + + +W ++ +DE H+++N ++ + F++ HR+++
Sbjct: 586 ----FNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLI 641
Query: 674 SGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 733
+G+P+QN+L+ELWSL FI P K + F E+ G S
Sbjct: 642 TGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYAS---------------- 685
Query: 734 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEM 793
L + P+LLRR+K DV+ SL P K EQ+L ++ Q K Y ++ ++ + G
Sbjct: 686 LHKELEPFLLRRVKKDVEKSL--PAKVEQILRMEMSALQ-KQYYKWILTRNYKALSKGSK 742
Query: 794 QIFSG----LIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLK 849
SG ++ L+K CNH L N + L+ + SGK+I+++ LL
Sbjct: 743 GSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH----LIRSSGKLILLDKLLI 798
Query: 850 IWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYN-EDTSIF 908
++G RVL+FSQ +MLDIL +L+ +++ + ++DG+ R+ + +N E + F
Sbjct: 799 RLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF 858
Query: 909 VFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTI 968
FLL+TR GGLG+NL A+ VVI+D DWNP D QA+ RA RIGQKKQV +YRL+T G++
Sbjct: 859 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSV 918
Query: 969 EEKIYHRQIFKQFLTNRVLK 988
EE I R K L + V++
Sbjct: 919 EEDILERAKKKMVLDHLVIQ 938
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 254 bits (649), Expect = 4e-67
Identities = 216/802 (26%), Positives = 365/802 (45%), Gaps = 103/802 (12%)
Query: 250 TQIPQKQEKKPRKIMLNEASGFEKYLADQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQ 309
T P+ +K K +EAS +K + + K +G K P P PP +
Sbjct: 689 TPKPKSSKKSSNKKPDSEASALKKKVN-------KGKTEGSENSDLDKTPPPSPPP---E 738
Query: 310 NKNKPNKKARVLSKKEERLKKHIKKLQKRALQFQGKVGLPKAR-RPWESDMRPEAEG-DS 367
P + R S++ +R K++ + L+ + + R P + + E D+
Sbjct: 739 EDEDPGVQKRRSSRQVKR-KRYTEDLEFKISDEEADDADAAGRDSPSNTSQSEQQESVDA 797
Query: 368 EGEESEYFPTE---EEEEEEDDEVEGAEADLSGDGTDY------ELKPLPKGGKRQKKVP 418
EG E + ++++E +EVE E + Y ++ L K + Q+K+
Sbjct: 798 EGPVVEKIMSSRSVKKQKESGEEVEIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIK 857
Query: 419 -----------VQEIDDDFFPSSGEEAE-----AASVGEGGGG-GRKVGRYRDDGDEDYY 461
+ EI+D+ F E + A S + G + ++ ED
Sbjct: 858 RFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDST 917
Query: 462 KQRLRRWNKLRLQDKEKRLKLEDDSEESDAEFDEGFKVPGFLFK-----KLFKYQQTGVR 516
+R + ++ ++++ EK + E ++E + + +K + KL +YQ GV
Sbjct: 918 WERRQDIDQAKIEEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVN 977
Query: 517 WLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTT 576
WL IL DEMGLGKTIQ I FL + I GP +++ P +
Sbjct: 978 WLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIH-----------GPFLVIAPLS 1026
Query: 577 VMHQWVKEFHTWWPPFRVAILHETGS-----------YTHKKEKLIRDVAHCHGILITSY 625
+ W +EF TW V + H + + + + ++I+ H I IT++
Sbjct: 1027 TIPNWEREFRTW-TELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAI-ITTF 1084
Query: 626 SYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLREL 685
I ++ W V++DE H+++N N + K H+++L+G+P+QN + EL
Sbjct: 1085 EMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEEL 1144
Query: 686 WSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRR 745
+SL F+ P + + FM++F G VQ L+ + P +LRR
Sbjct: 1145 FSLLHFLEPSRFPSETTFMQEF------GDLKTEEQVQK---------LQAILKPMMLRR 1189
Query: 746 MKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEM----QIFSGLIA 801
+K DV+ +L+ K E ++ LT+ Q K Y+ ++ + G + + ++
Sbjct: 1190 LKEDVEKNLA--PKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMME 1247
Query: 802 LRKICNHPDLFSGGPKNL---------KGLPDDELEEDQFGYWKRSGKMIVVESLLKIWH 852
LRK CNHP L +G + + PD +L+ + +GK+++++ LL
Sbjct: 1248 LRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQ----AMIQAAGKLVLIDKLLPKLK 1303
Query: 853 KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE-DTSIFVFL 911
G RVL+FSQ + LDILE +L ++Y Y ++DG RQ I R+++ D+ FVFL
Sbjct: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
Query: 912 LTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEK 971
L TR GGLG+NLT A+ +I+D DWNP D QA+ R RIGQ K V +YRL+T + E +
Sbjct: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
Query: 972 IYHRQIFKQFLTNRVLKDPKQR 993
++ + K L VL+ R
Sbjct: 1424 MFDKASLKLGLDKAVLQSMSGR 1445
Score = 32.7 bits (73), Expect = 2.7
Identities = 64/312 (20%), Positives = 118/312 (37%), Gaps = 54/312 (17%)
Query: 238 ELIRTGQMTPFGTQIPQKQEKKPRK--IMLNEAS----------GFEKYLADQAKLSFER 285
+L+++ P Q PQ+++KK + I+ + S G + ++ L +
Sbjct: 579 QLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQ 638
Query: 286 KKQGCNKRA-ARKAPA-------------PVTPPAPVQNKNKPNKKARVLSKKEERLKKH 331
+++ KR+ A+K P P TP AP K KKA+ + K + KK
Sbjct: 639 EEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKS 698
Query: 332 I-KKLQKRALQFQGKVGLPKARRPWESDM-------RPEAEGDSEGEESEYFPTEEEEEE 383
KK A + KV K SD+ P E + G + + + +
Sbjct: 699 SNKKPDSEASALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKR 758
Query: 384 EDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQEIDDDFFPSSGEEAEAASVGEGG 443
+++E +D D D + P + ++ QE D P + + SV +
Sbjct: 759 YTEDLEFKISDEEADDADAAGRDSPSNTSQSEQ---QESVDAEGPVVEKIMSSRSVKKQK 815
Query: 444 GGGRKVGRYRDDGDEDYYKQR-----LRRWNKL-------RLQDKEKRLKLEDDSEESDA 491
G +V + +E Y K + +W + R+Q K KR K + + +
Sbjct: 816 ESGEEV-----EIEEFYVKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKAKQGQNKFLS 870
Query: 492 EFDEGFKVPGFL 503
E ++ P ++
Sbjct: 871 EIEDELFNPDYV 882
Score = 31.6 bits (70), Expect = 6.0
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 341 QFQGKVGLPK--ARRPWESDMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGD 398
Q +GKV P+ A + E E D G+ES+ E E +E++G E
Sbjct: 2170 QAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQ-ECEAEASSVKNELKGVEV----- 2223
Query: 399 GTDYELKPLPKGGKRQKKVPVQEIDDDFFPSSGEEAEAASVGEG--GGGGRKVGRYRDDG 456
G D K + + G + + E DD SS EA A S G+ + RD+
Sbjct: 2224 GADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDET 2283
Query: 457 DEDYYKQ 463
+ +Y +
Sbjct: 2284 RDGFYME 2290
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 253 bits (647), Expect = 7e-67
Identities = 166/506 (32%), Positives = 257/506 (50%), Gaps = 55/506 (10%)
Query: 507 LFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGL 566
L YQ G+ WL Q IL DEMGLGKT+Q FL L Y + ++G
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSL-YKEGHSKG-------- 776
Query: 567 GPTVIVCPTTVMHQWVKEFHTWWPPFRV----------AILHETGSYTH--------KKE 608
P ++ P + + W +EF W P V AI+ E K
Sbjct: 777 -PFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKAS 835
Query: 609 KLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTP 668
++ ++ + +L+TSY I + + DW +I+DE H+++N + +
Sbjct: 836 RMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ 895
Query: 669 HRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAY 728
H+++L+G+P+QNNL EL+ L +F+ P + L F+E+F+ A Q+K
Sbjct: 896 HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFA--------DIAKEDQIKK-- 945
Query: 729 KCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRI 788
L D + P++LRR+K+DV ++ P K E ++ L+ Q K Y+ + +
Sbjct: 946 -----LHDMLGPHMLRRLKADVFKNM--PSKTELIVRVELSPMQKKYYKYILTRN--FEA 996
Query: 789 LNG-----EMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIV 843
LN ++ + + ++ L+K CNHP LF +P+ D + SGK+++
Sbjct: 997 LNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMY--DGSALIRASGKLLL 1054
Query: 844 VESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE 903
++ +LK + G RVL+FSQ +MLD+LE FL + Y Y ++DG T RQ I R+N
Sbjct: 1055 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1114
Query: 904 D-TSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRL 962
F FLL+TR GGLG+NL A+ V+IYD DWNP D QA RA RIGQ K+V +YR
Sbjct: 1115 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1174
Query: 963 LTAGTIEEKIYHRQIFKQFLTNRVLK 988
+T ++EE+I K LT+ V++
Sbjct: 1175 VTRASVEERITQVAKKKMMLTHLVVR 1200
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 249 bits (635), Expect = 2e-65
Identities = 171/512 (33%), Positives = 266/512 (51%), Gaps = 65/512 (12%)
Query: 506 KLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEG 565
+L +YQ G+ WL + IL DEMGLGKTIQ I FL S+I RG +
Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFL-----SEIFLRGIH----- 509
Query: 566 LGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKK-----EKLIRD------- 613
GP +I+ P + + W +EF TW + H GS ++ E + RD
Sbjct: 510 -GPFLIIAPLSTITNWEREFRTW-TEMNAIVYH--GSQISRQMIQQYEMVYRDAQGNPLS 565
Query: 614 -VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRII 672
V H ++IT++ I ++ + W VI+DE H+++N N + K H+++
Sbjct: 566 GVFKFH-VVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVL 624
Query: 673 LSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCAC 732
L+G+P+QN++ EL+SL +F+ P + + F+E+F + QVK
Sbjct: 625 LTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG--------DLKTEEQVKK------ 670
Query: 733 VLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGE 792
L+ + P +LRR+K DV+ +L+ K E ++ LT+ Q K Y+ ++ K + G
Sbjct: 671 -LQSILKPMMLRRLKDDVEKNLA--PKQETIIEVELTNIQKKYYRAILE-KNFSFLTKGA 726
Query: 793 MQ-----IFSGLIALRKICNHPDLFSGGPKNL---------KGLPDDELEEDQFGYWKRS 838
Q + + ++ LRK CNHP L +G + + PD +L+ + +
Sbjct: 727 NQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQ----AMIQAA 782
Query: 839 GKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLI 898
GK+++++ LL G +VL+FSQ + LDILE +L ++YTY ++DG RQ I
Sbjct: 783 GKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAI 842
Query: 899 TRY-NEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQV 957
R+ D+ FVFLL TR GGLG+NLT A+ +I+D DWNP D QA+ R RIGQ K V
Sbjct: 843 DRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAV 902
Query: 958 TVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKD 989
VYRL+T + E +++ + K L VL+D
Sbjct: 903 KVYRLITRNSYEREMFDKASLKLGLDKAVLQD 934
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 245 bits (626), Expect = 2e-64
Identities = 168/511 (32%), Positives = 258/511 (50%), Gaps = 55/511 (10%)
Query: 506 KLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEG 565
+L +YQ G+ WL + IL DEMGLGKTIQ I FL + + IR
Sbjct: 859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIR---------- 908
Query: 566 LGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKK-----EKLIRDV------ 614
GP +I+ P + + W +EF TW V + H GS ++ E RD
Sbjct: 909 -GPFLIIAPLSTIANWEREFRTW-TDINVVVYH--GSLISRQMIQQYEMYFRDSQGRIIR 964
Query: 615 -AHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIIL 673
A+ +IT++ I +++ +W VI+DE H+++N N + K H+++L
Sbjct: 965 GAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLL 1024
Query: 674 SGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 733
+G+P+QN + EL+SL F+ P + + FM++F G VQ
Sbjct: 1025 TGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEF------GDLKTEEQVQK--------- 1069
Query: 734 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEM 793
L+ + P +LRR+K DV+ L+ K E ++ LT+ Q K Y+ ++ K + G
Sbjct: 1070 LQAILKPMMLRRLKEDVEKKLA--PKEETIIEVELTNIQKKYYRAILE-KNFSFLSKGAG 1126
Query: 794 Q-----IFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYW-----KRSGKMIV 843
Q + + ++ LRK CNHP L G + + G D + + +GK+++
Sbjct: 1127 QTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVL 1186
Query: 844 VESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE 903
++ LL G +VL+FSQ + LDILE +L ++Y Y ++DG RQ I R+++
Sbjct: 1187 IDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSK 1246
Query: 904 -DTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRL 962
D+ FVFLL TR GGLG+NLT A+ +I+D DWNP D QA+ R RIGQ K V VYRL
Sbjct: 1247 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRL 1306
Query: 963 LTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993
+T + E +++ R K L VL+ R
Sbjct: 1307 VTRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 244 bits (622), Expect = 6e-64
Identities = 167/510 (32%), Positives = 257/510 (50%), Gaps = 69/510 (13%)
Query: 510 YQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPT 569
YQ+ G+ WL +H GIL DEMGLGKTIQ IAFLA L Y+ GP
Sbjct: 500 YQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-----------YQEGNNGPH 548
Query: 570 VIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHC----HGILITSY 625
+IV P + + W++E + W P +V + GS +K+ IR H + +++T+Y
Sbjct: 549 LIVVPASTIDNWLREVNLWCPTLKVLCYY--GSQEERKQ--IRFNIHSRYEDYNVIVTTY 604
Query: 626 SYIRLMQDDIS---RYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNL 682
+ DD S R +Y I DEGH ++N + +R++L+G+P+QNNL
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664
Query: 683 RELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYL 742
EL SL +F+ P + + + T + + + A+ + I P++
Sbjct: 665 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAH-----AKQIIKPFI 719
Query: 743 LRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQN-FVDSKEVYRILNGEMQIFSGLIA 801
LRR+K +V LP K +++ C ++++Q ++Y F K+ L ++ + ++
Sbjct: 720 LRRVKEEVLK--QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQ 777
Query: 802 LRKICNHP----------------DLFSGGPKNLKGLPDDELEE-------------DQF 832
LRK+ NHP L P + + PD E+ Q+
Sbjct: 778 LRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQY 837
Query: 833 GYWKR----------SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTY 882
+ SGK V+ +L ++G RV+LFSQ MLDILEV L+ ++ Y
Sbjct: 838 RHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRY 897
Query: 883 LKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDT 942
L++DG T I+ R LI +N D IFVFLL+T+ GGLG+NLT AN V+++D D NP D
Sbjct: 898 LRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 957
Query: 943 QARERAWRIGQKKQVTVYRLLTAGTIEEKI 972
QA +R R+GQ K+V V +L++ GTIEE +
Sbjct: 958 QAEDRCHRVGQTKEVLVIKLISQGTIEESM 987
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,098,388
Number of Sequences: 37866
Number of extensions: 2914647
Number of successful extensions: 18649
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 408
Number of HSP's that attempted gapping in prelim test: 13598
Number of HSP's gapped (non-prelim): 3085
length of query: 1493
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1378
effective length of database: 13,892,928
effective search space: 19144454784
effective search space used: 19144454784
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.