Search of human proteins with 45545405

Search of human proteins with 45545405

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|45545405 nuclear receptor subfamily 5, group A, member 2
isoform 1 [Homo sapiens]
         (541 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|45545405 nuclear receptor subfamily 5, group A, member 2 isof...  1094   0.0  
gi|4504343 nuclear receptor subfamily 5, group A, member 2 isofo...   979   0.0  
gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Hom...   560   e-159
gi|53729327 nuclear receptor subfamily 6, group A, member 1 isof...   168   1e-41
gi|53729325 nuclear receptor subfamily 6, group A, member 1 isof...   167   3e-41
gi|4506755 retinoid X receptor, alpha [Homo sapiens]                  134   2e-31
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]        130   2e-30
gi|11415052 retinoid X receptor, beta [Homo sapiens]                  130   4e-30
gi|19743907 RAR-related orphan receptor B [Homo sapiens]              127   2e-29
gi|19743901 RAR-related orphan receptor A isoform b [Homo sapiens]    124   2e-28
gi|19743905 RAR-related orphan receptor A isoform d [Homo sapiens]    124   2e-28
gi|4506577 RAR-related orphan receptor A isoform c [Homo sapiens]     124   2e-28
gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens]    124   2e-28
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo...   122   1e-27
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof...   121   2e-27
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof...   121   2e-27
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof...   121   2e-27
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof...   121   2e-27
gi|45545429 estrogen-related receptor gamma isoform 2 [Homo sapi...   118   2e-26
gi|45545427 estrogen-related receptor gamma isoform 2 [Homo sapi...   118   2e-26
gi|45545433 estrogen-related receptor gamma isoform 1 [Homo sapi...   118   2e-26
gi|197209821 estrogen-related receptor gamma isoform 2 [Homo sap...   118   2e-26
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom...   117   2e-26
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom...   117   2e-26
gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Hom...   117   3e-26
gi|223555953 nuclear receptor subfamily 2, group F, member 2 iso...   117   3e-26
gi|223555951 nuclear receptor subfamily 2, group F, member 2 iso...   117   3e-26
gi|223555949 nuclear receptor subfamily 2, group F, member 2 iso...   117   3e-26
gi|14149746 nuclear receptor subfamily 2, group F, member 2 isof...   117   3e-26
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo...   117   3e-26

>gi|45545405 nuclear receptor subfamily 5, group A, member 2 isoform
           1 [Homo sapiens]
          Length = 541

 Score = 1094 bits (2829), Expect = 0.0
 Identities = 541/541 (100%), Positives = 541/541 (100%)

Query: 1   MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQG 60
           MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQG
Sbjct: 1   MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQG 60

Query: 61  QMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRY 120
           QMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRY
Sbjct: 61  QMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRY 120

Query: 121 TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ 180
           TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ
Sbjct: 121 TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ 180

Query: 181 QKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPF 240
           QKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPF
Sbjct: 181 QKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPF 240

Query: 241 VTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS 300
           VTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS
Sbjct: 241 VTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS 300

Query: 301 IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA 360
           IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA
Sbjct: 301 IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA 360

Query: 361 RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA 420
           RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA
Sbjct: 361 RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA 420

Query: 421 GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA 480
           GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA
Sbjct: 421 GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA 480

Query: 481 LLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
           LLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR
Sbjct: 481 LLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540

Query: 541 A 541
           A
Sbjct: 541 A 541


>gi|4504343 nuclear receptor subfamily 5, group A, member 2 isoform
           2 [Homo sapiens]
          Length = 495

 Score =  979 bits (2531), Expect = 0.0
 Identities = 495/541 (91%), Positives = 495/541 (91%), Gaps = 46/541 (8%)

Query: 1   MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQG 60
           MSSNSDTGDLQESLKHGLTPI                                       
Sbjct: 1   MSSNSDTGDLQESLKHGLTPI--------------------------------------- 21

Query: 61  QMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRY 120
                  VSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRY
Sbjct: 22  -------VSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRY 74

Query: 121 TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ 180
           TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ
Sbjct: 75  TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ 134

Query: 181 QKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPF 240
           QKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPF
Sbjct: 135 QKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPF 194

Query: 241 VTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS 300
           VTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS
Sbjct: 195 VTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS 254

Query: 301 IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA 360
           IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA
Sbjct: 255 IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA 314

Query: 361 RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA 420
           RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA
Sbjct: 315 RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA 374

Query: 421 GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA 480
           GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA
Sbjct: 375 GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA 434

Query: 481 LLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
           LLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR
Sbjct: 435 LLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494

Query: 541 A 541
           A
Sbjct: 495 A 495


>gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Homo
           sapiens]
          Length = 461

 Score =  560 bits (1442), Expect = e-159
 Identities = 288/470 (61%), Positives = 356/470 (75%), Gaps = 13/470 (2%)

Query: 74  VNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKT 133
           ++YSYDEDL+ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNK YTC E+Q+C+IDKT
Sbjct: 1   MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT 60

Query: 134 QRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKL 193
           QRKRCP+CRFQKCL+VGM+LEAVRADRMRGGRNKFGPMYKRDRALKQQKKA IRANG KL
Sbjct: 61  QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL 120

Query: 194 EAMSQV-IQAMPSDLTISSAIQNIHSAS-KGLPLNHAALPPTDYDRSPFVTSPISMTMP- 250
           E    + +   P          ++H    KGL     A P  D     F    + M +P 
Sbjct: 121 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGD-----FGAPALPMAVPG 175

Query: 251 PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLK 310
            HG L GY  Y  FP RAIKSEYP+PY S P+  + Y Y + +  S   ++P LIL+LL+
Sbjct: 176 AHGPLAGY-LYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPF--SGGPNVPELILQLLQ 232

Query: 311 CEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELK 370
            EPDE QV+A+I+  LQ+    +S+ ++ + FGL+C+MADQT  SIV+WAR  + F+EL+
Sbjct: 233 LEPDEDQVRARILGCLQEP--TKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELE 290

Query: 371 VDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSH 430
           V DQM LLQNCWSELL+ DHIYRQV HGKEGSI LVTGQ+V+ + +A+QAG+ L++L+  
Sbjct: 291 VADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLR 350

Query: 431 AQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYP 490
           AQELV +L +LQ D++EFVCLKF++LFSLD+K L N  LV+  QE+ NAALLDYT+C+YP
Sbjct: 351 AQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 410

Query: 491 QQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
              +KF QLLL L E+RA+SMQA+EYLY+KHL  ++P NNLLIEML AK+
Sbjct: 411 HCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460


>gi|53729327 nuclear receptor subfamily 6, group A, member 1 isoform
           2 [Homo sapiens]
          Length = 475

 Score =  168 bits (425), Expect = 1e-41
 Identities = 117/441 (26%), Positives = 197/441 (44%), Gaps = 52/441 (11%)

Query: 79  DEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRC 138
           D   +  C +CGD+ +G HYG+++CE CKGFFKR++ N + Y C  ++NC + + QR RC
Sbjct: 49  DRAEQRTCLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRC 108

Query: 139 PYCRFQKCLSVGMKLEAVRADRMRGGRNK-FGPMYKRDRALKQQKKALIRANGLKLEAMS 197
            YCR  KCL +GM  +A+R D M GGRNK  GP+    +  +++ + ++     + EA  
Sbjct: 109 QYCRLLKCLQMGMNRKAIREDGMPGGRNKSIGPV----QISEEEIERIMSGQEFEEEANH 164

Query: 198 QVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQG 257
                     +  +     +  S G  L+  ++    +    F    + M++PPH     
Sbjct: 165 WSNHGDSDHSSPGNRASESNQPSPGSTLSSRSVELNGF--MAFREQYMGMSVPPH----- 217

Query: 258 YQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEP-DEP 316
              Y + P     S +         S+   SY          S+ H +L     EP   P
Sbjct: 218 ---YQYIPHLFSYSGHSPLLPQQARSLDPQSY----------SLIHQLLSAEDLEPLGTP 264

Query: 317 QVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMK 376
            +     A  Q E            F L+C++AD+ LF  + W +   FF EL + D   
Sbjct: 265 MLIEDGYAVTQAE-----------LFALLCRLADELLFRQIAWIKKLPFFCELSIKDYTC 313

Query: 377 LLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVA 436
           LL + W EL++L  +    V+ K+     + G+  D +   S +   L+       E++ 
Sbjct: 314 LLSSTWQELILLSSL---TVYSKQ-----IFGELADVTAKYSPSDEELHRFSDEGMEVIE 365

Query: 437 KL-------RSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNY 489
           +L         L+    E+ C+K +   + D++ L +   +E + ++      D+T   Y
Sbjct: 366 RLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKY 425

Query: 490 PQQTEKFGQLLLRLPEIRAIS 510
             Q  +F  L++ LPEIR I+
Sbjct: 426 THQPNRFPDLMMCLPEIRYIA 446


>gi|53729325 nuclear receptor subfamily 6, group A, member 1 isoform
           1 [Homo sapiens]
          Length = 480

 Score =  167 bits (422), Expect = 3e-41
 Identities = 118/446 (26%), Positives = 199/446 (44%), Gaps = 51/446 (11%)

Query: 74  VNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKT 133
           ++ S D   +  C +CGD+ +G HYG+++CE CKGFFKR++ N + Y C  ++NC + + 
Sbjct: 48  ISVSDDRAEQRTCLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRK 107

Query: 134 QRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNK-FGPMYKRDRALKQQKKALIRANGLK 192
           QR RC YCR  KCL +GM  +A+R D M GGRNK  GP+    +  +++ + ++     +
Sbjct: 108 QRNRCQYCRLLKCLQMGMNRKAIREDGMPGGRNKSIGPV----QISEEEIERIMSGQEFE 163

Query: 193 LEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPH 252
            EA            +  +     +  S G  L+ +     +     F    + M++PPH
Sbjct: 164 EEANHWSNHGDSDHSSPGNRASESNQPSPGSTLSSSRSVELN-GFMAFREQYMGMSVPPH 222

Query: 253 GSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCE 312
                   Y + P     S +         S+   SY          S+ H +L     E
Sbjct: 223 --------YQYIPHLFSYSGHSPLLPQQARSLDPQSY----------SLIHQLLSAEDLE 264

Query: 313 P-DEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKV 371
           P   P +     A  Q E            F L+C++AD+ LF  + W +   FF EL +
Sbjct: 265 PLGTPMLIEDGYAVTQAE-----------LFALLCRLADELLFRQIAWIKKLPFFCELSI 313

Query: 372 DDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHA 431
            D   LL + W EL++L  +    V+ K+     + G+  D +   S +   L+      
Sbjct: 314 KDYTCLLSSTWQELILLSSL---TVYSKQ-----IFGELADVTAKYSPSDEELHRFSDEG 365

Query: 432 QELVAKL-------RSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDY 484
            E++ +L         L+    E+ C+K +   + D++ L +   +E + ++      D+
Sbjct: 366 MEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYICQDF 425

Query: 485 TMCNYPQQTEKFGQLLLRLPEIRAIS 510
           T   Y  Q  +F  L++ LPEIR I+
Sbjct: 426 TEYKYTHQPNRFPDLMMCLPEIRYIA 451


>gi|4506755 retinoid X receptor, alpha [Homo sapiens]
          Length = 462

 Score =  134 bits (338), Expect = 2e-31
 Identities = 80/195 (41%), Positives = 122/195 (62%), Gaps = 6/195 (3%)

Query: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 404
           +C+ AD+ LF++VEWA+    F EL +DDQ+ LL+  W+ELLI    +R +   K+G I 
Sbjct: 268 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDG-IL 325

Query: 405 LVTGQQVDY-SIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 463
           L TG  V   S  ++  GA  + +++   ELV+K+R +Q D+ E  CL+ +VLF+ D K 
Sbjct: 326 LATGLHVHRNSAHSAGVGAIFDRVLT---ELVSKMRDMQMDKTELGCLRAIVLFNPDSKG 382

Query: 464 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 523
           L N   VE ++E+V A+L  Y    YP+Q  +F +LLLRLP +R+I ++  E+L++  L 
Sbjct: 383 LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 442

Query: 524 GDVPYNNLLIEMLHA 538
           GD P +  L+EML A
Sbjct: 443 GDTPIDTFLMEMLEA 457



 Score =  118 bits (295), Expect = 2e-26
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           + +C +CGD+ SG HYG+ +CE CKGFFKRTV+ +  YTC +N++C IDK QR RC YCR
Sbjct: 132 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCR 191

Query: 143 FQKCLSVGMKLEAVRADRMRG 163
           +QKCL++GMK EAV+ +R RG
Sbjct: 192 YQKCLAMGMKREAVQEERQRG 212


>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
          Length = 463

 Score =  130 bits (328), Expect = 2e-30
 Identities = 76/193 (39%), Positives = 117/193 (60%), Gaps = 6/193 (3%)

Query: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 404
           +C  AD+ LF++VEWA+    F +L ++DQ+ LL+  W+ELLI    +R V    +  I 
Sbjct: 269 ICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSV--SVQDGIL 326

Query: 405 LVTGQQVDYSIIASQA-GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 463
           L TG  V  S   S   G+  + +++   ELV+K++ +Q D+ E  CL+ +VLF+ D K 
Sbjct: 327 LATGLHVHRSSAHSAGVGSIFDRVLT---ELVSKMKDMQMDKSELGCLRAIVLFNPDAKG 383

Query: 464 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 523
           L N   VE ++E+V A L  YT   YP+Q  +F +LLLRLP +R+I ++  E+L++  L 
Sbjct: 384 LSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 443

Query: 524 GDVPYNNLLIEML 536
           GD P +  L+EML
Sbjct: 444 GDTPIDTFLMEML 456



 Score =  114 bits (284), Expect = 3e-25
 Identities = 46/81 (56%), Positives = 63/81 (77%)

Query: 82  LEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYC 141
           ++ +C +CGD+ SG HYG+ +CE CKGFFKRT++ +  YTC +N++C IDK QR RC YC
Sbjct: 135 VKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYC 194

Query: 142 RFQKCLSVGMKLEAVRADRMR 162
           R+QKCL +GMK EAV+ +R R
Sbjct: 195 RYQKCLVMGMKREAVQEERQR 215


>gi|11415052 retinoid X receptor, beta [Homo sapiens]
          Length = 533

 Score =  130 bits (326), Expect = 4e-30
 Identities = 75/195 (38%), Positives = 118/195 (60%), Gaps = 6/195 (3%)

Query: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 404
           +C+ AD+ LF++VEWA+    F  L +DDQ+ LL+  W+ELLI    +R +       I 
Sbjct: 339 ICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSI--DVRDGIL 396

Query: 405 LVTGQQVDY-SIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 463
           L TG  V   S  ++  GA  + +++   ELV+K+R ++ D+ E  CL+ ++LF+ D K 
Sbjct: 397 LATGLHVHRNSAHSAGVGAIFDRVLT---ELVSKMRDMRMDKTELGCLRAIILFNPDAKG 453

Query: 464 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 523
           L N   VE ++E+V A+L  Y    YP+Q  +F +LLLRLP +R+I ++  E+L++  L 
Sbjct: 454 LSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 513

Query: 524 GDVPYNNLLIEMLHA 538
           GD P +  L+EML A
Sbjct: 514 GDTPIDTFLMEMLEA 528



 Score =  116 bits (291), Expect = 5e-26
 Identities = 46/81 (56%), Positives = 63/81 (77%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           + LC +CGD+ SG HYG+ +CE CKGFFKRT++ +  Y+C +N++C +DK QR RC YCR
Sbjct: 202 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 261

Query: 143 FQKCLSVGMKLEAVRADRMRG 163
           +QKCL+ GMK EAV+ +R RG
Sbjct: 262 YQKCLATGMKREAVQEERQRG 282


>gi|19743907 RAR-related orphan receptor B [Homo sapiens]
          Length = 459

 Score =  127 bits (320), Expect = 2e-29
 Identities = 124/460 (26%), Positives = 221/460 (48%), Gaps = 51/460 (11%)

Query: 86  CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 145
           C +CGDK SG HYG++TCE CKGFF+R+ QNN  Y+C   +NC ID+T R RC +CR QK
Sbjct: 10  CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69

Query: 146 CLSVGMKLEAVRADRM--RGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAM 203
           CL++GM  +AV+  RM  +   + +  + K  + L++Q++   + +G + EA+++V  + 
Sbjct: 70  CLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQ---QQSG-EAEALARVYSS- 124

Query: 204 PSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGH 263
               +IS+ + N+++ + G   N   +   D  +S    +  S    P  S  G    G 
Sbjct: 125 ----SISNGLSNLNNETSGTYANGHVI---DLPKSEGYYNVDSGQPSPDQS--GLDMTG- 174

Query: 264 FPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTS---SPASIPHLILELLKCEPDEPQV-- 318
              + IK E     TS P ++  YS  ++ Q +   +   I  +   ++K   +  Q   
Sbjct: 175 --IKQIKQEPIYDLTSVP-NLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTM 231

Query: 319 -QAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSI---VEWARSSIFFRELKVDDQ 374
            +   +A+          ++  S   L  + A Q   +I   VE+A+    F EL  +DQ
Sbjct: 232 EELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQ 291

Query: 375 MKLLQNCWSELLIL------DHIYRQVV-HGKEGSIFLVTGQQVDYSIIASQAGATLNNL 427
           + LL++   E++++      + +   V+  GK G      G Q+ +  + S      ++L
Sbjct: 292 ILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYG------GMQM-FKALGS------DDL 338

Query: 428 MSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMC 487
           ++ A +    L SLQ  + E       VL S D   L   + V+ +QE++  AL      
Sbjct: 339 VNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQK 398

Query: 488 NYPQQTEKFGQLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 526
           N+    E   +L+ ++P I A+ ++  E+   +K  + ++
Sbjct: 399 NH-LDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPEI 437


>gi|19743901 RAR-related orphan receptor A isoform b [Homo sapiens]
          Length = 556

 Score =  124 bits (312), Expect = 2e-28
 Identities = 118/485 (24%), Positives = 204/485 (42%), Gaps = 33/485 (6%)

Query: 51  GLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFF 110
           G+  S  + G+ P + +  +     Y   +     C +CGDK SG HYG++TCE CKGFF
Sbjct: 71  GVCCSWRQNGKPPYSQKEDKEVQTGYMNAQIEIIPCKICGDKSSGIHYGVITCEGCKGFF 130

Query: 111 KRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGP 170
           +R+ Q+N  Y+C   +NC ID+T R RC +CR QKCL+VGM  +AV          KFG 
Sbjct: 131 RRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAV----------KFGR 180

Query: 171 MYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAAL 230
           M K     KQ+          +++   +  Q  P +    +   NI  ++ GL   H  L
Sbjct: 181 MSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNI--SANGLTELHDDL 233

Query: 231 PPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYM 290
                  +P  +   S     +  +Q            IK E    YT +       S+ 
Sbjct: 234 SNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFT 293

Query: 291 --DSYQTSSPASIPHLILELLKCEPD------EPQVQAKIMAYLQQEQANRSKHEKLSTF 342
             ++  T S A + HL   + K   +      E   Q     +LQ+E  N    ++   +
Sbjct: 294 NGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMW 353

Query: 343 GLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGS 402
            L      + +  +VE+A+    F EL  +DQ+ LL+    E++ +     +    +  +
Sbjct: 354 QLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMC--RAFDSQNNT 411

Query: 403 IFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVK 462
           ++   G+     +  S       + +S   E    L S+   + E       VL S D  
Sbjct: 412 VYF-DGKYASPDVFKSLG---CEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRS 467

Query: 463 NLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAI-SMQAEEYLYYKH 521
            L+    +E +Q+++  AL      N+ ++     +L+ ++  +RA+     E+ + +K 
Sbjct: 468 WLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILTKLICKVSTLRALCGRHTEKLMAFKA 526

Query: 522 LNGDV 526
           +  D+
Sbjct: 527 IYPDI 531


>gi|19743905 RAR-related orphan receptor A isoform d [Homo sapiens]
          Length = 468

 Score =  124 bits (311), Expect = 2e-28
 Identities = 113/450 (25%), Positives = 192/450 (42%), Gaps = 33/450 (7%)

Query: 86  CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 145
           C +CGDK SG HYG++TCE CKGFF+R+ Q+N  Y+C   +NC ID+T R RC +CR QK
Sbjct: 18  CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 77

Query: 146 CLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPS 205
           CL+VGM  +AV          KFG M K     KQ+          +++   +  Q  P 
Sbjct: 78  CLAVGMSRDAV----------KFGRMSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPG 122

Query: 206 DLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 265
           +    +   NI  ++ GL   H  L       +P  +   S     +  +Q         
Sbjct: 123 EAEPLTPTYNI--SANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD 180

Query: 266 SRAIKSEYPDPYTSSPESIMGYSYM--DSYQTSSPASIPHLILELLKCEPD------EPQ 317
              IK E    YT +       S+   ++  T S A + HL   + K   +      E  
Sbjct: 181 INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL 240

Query: 318 VQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKL 377
            Q     +LQ+E  N    ++   + L      + +  +VE+A+    F EL  +DQ+ L
Sbjct: 241 QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL 300

Query: 378 LQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAK 437
           L+    E++ +     +    +  +++   G+     +  S       + +S   E    
Sbjct: 301 LKAGSLEVVFIRMC--RAFDSQNNTVYF-DGKYASPDVFKSLG---CEDFISFVFEFGKS 354

Query: 438 LRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 497
           L S+   + E       VL S D   L+    +E +Q+++  AL      N+ ++     
Sbjct: 355 LCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILT 413

Query: 498 QLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 526
           +L+ ++  +RA+     E+ + +K +  D+
Sbjct: 414 KLICKVSTLRALCGRHTEKLMAFKAIYPDI 443


>gi|4506577 RAR-related orphan receptor A isoform c [Homo sapiens]
          Length = 548

 Score =  124 bits (311), Expect = 2e-28
 Identities = 113/450 (25%), Positives = 192/450 (42%), Gaps = 33/450 (7%)

Query: 86  CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 145
           C +CGDK SG HYG++TCE CKGFF+R+ Q+N  Y+C   +NC ID+T R RC +CR QK
Sbjct: 98  CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157

Query: 146 CLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPS 205
           CL+VGM  +AV          KFG M K     KQ+          +++   +  Q  P 
Sbjct: 158 CLAVGMSRDAV----------KFGRMSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPG 202

Query: 206 DLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 265
           +    +   NI  ++ GL   H  L       +P  +   S     +  +Q         
Sbjct: 203 EAEPLTPTYNI--SANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD 260

Query: 266 SRAIKSEYPDPYTSSPESIMGYSYM--DSYQTSSPASIPHLILELLKCEPD------EPQ 317
              IK E    YT +       S+   ++  T S A + HL   + K   +      E  
Sbjct: 261 INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL 320

Query: 318 VQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKL 377
            Q     +LQ+E  N    ++   + L      + +  +VE+A+    F EL  +DQ+ L
Sbjct: 321 QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL 380

Query: 378 LQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAK 437
           L+    E++ +     +    +  +++   G+     +  S       + +S   E    
Sbjct: 381 LKAGSLEVVFIRMC--RAFDSQNNTVYF-DGKYASPDVFKSLG---CEDFISFVFEFGKS 434

Query: 438 LRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 497
           L S+   + E       VL S D   L+    +E +Q+++  AL      N+ ++     
Sbjct: 435 LCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILT 493

Query: 498 QLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 526
           +L+ ++  +RA+     E+ + +K +  D+
Sbjct: 494 KLICKVSTLRALCGRHTEKLMAFKAIYPDI 523


>gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens]
          Length = 523

 Score =  124 bits (311), Expect = 2e-28
 Identities = 113/450 (25%), Positives = 192/450 (42%), Gaps = 33/450 (7%)

Query: 86  CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 145
           C +CGDK SG HYG++TCE CKGFF+R+ Q+N  Y+C   +NC ID+T R RC +CR QK
Sbjct: 73  CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 132

Query: 146 CLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPS 205
           CL+VGM  +AV          KFG M K     KQ+          +++   +  Q  P 
Sbjct: 133 CLAVGMSRDAV----------KFGRMSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPG 177

Query: 206 DLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 265
           +    +   NI  ++ GL   H  L       +P  +   S     +  +Q         
Sbjct: 178 EAEPLTPTYNI--SANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD 235

Query: 266 SRAIKSEYPDPYTSSPESIMGYSYM--DSYQTSSPASIPHLILELLKCEPD------EPQ 317
              IK E    YT +       S+   ++  T S A + HL   + K   +      E  
Sbjct: 236 INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL 295

Query: 318 VQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKL 377
            Q     +LQ+E  N    ++   + L      + +  +VE+A+    F EL  +DQ+ L
Sbjct: 296 QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL 355

Query: 378 LQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAK 437
           L+    E++ +     +    +  +++   G+     +  S       + +S   E    
Sbjct: 356 LKAGSLEVVFIRMC--RAFDSQNNTVYF-DGKYASPDVFKSLG---CEDFISFVFEFGKS 409

Query: 438 LRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 497
           L S+   + E       VL S D   L+    +E +Q+++  AL      N+ ++     
Sbjct: 410 LCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILT 468

Query: 498 QLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 526
           +L+ ++  +RA+     E+ + +K +  D+
Sbjct: 469 KLICKVSTLRALCGRHTEKLMAFKAIYPDI 498


>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
           sapiens]
          Length = 598

 Score =  122 bits (305), Expect = 1e-27
 Identities = 51/85 (60%), Positives = 62/85 (72%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           E LC VCGD  +  HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 260 EGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 319

Query: 143 FQKCLSVGMKLEAVRADRMRGGRNK 167
           FQKCL+VGM  E VR D ++G R +
Sbjct: 320 FQKCLAVGMVKEVVRTDSLKGRRGR 344



 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 9/171 (5%)

Query: 359 WARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIAS 418
           WA     F +L   DQ  L ++ + EL +L   YR   +  EG +    G  +       
Sbjct: 420 WAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRS--NPVEGKLIFCNGVVLHRLQCVR 477

Query: 419 QAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVN 478
             G  +++++    E  + L+++  D   F C+  L + + +   L+  + VE +Q ++ 
Sbjct: 478 GFGEWIDSIV----EFSSNLQNMNIDISAFSCIAALAMVT-ERHGLKEPKRVEELQNKIV 532

Query: 479 AALLDYTMCNYP--QQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
             L D+   N     +     +LL +LPE+R +  Q  + ++Y  L   VP
Sbjct: 533 NCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVP 583


>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
           b [Homo sapiens]
          Length = 637

 Score =  121 bits (303), Expect = 2e-27
 Identities = 51/85 (60%), Positives = 61/85 (71%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           E  C VCGD  +  HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 300 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 359

Query: 143 FQKCLSVGMKLEAVRADRMRGGRNK 167
           FQKCLSVGM  E VR D ++G R +
Sbjct: 360 FQKCLSVGMVKEVVRTDSLKGRRGR 384


>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
           c [Homo sapiens]
          Length = 443

 Score =  121 bits (303), Expect = 2e-27
 Identities = 51/85 (60%), Positives = 61/85 (71%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           E  C VCGD  +  HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 289 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 348

Query: 143 FQKCLSVGMKLEAVRADRMRGGRNK 167
           FQKCLSVGM  E VR D ++G R +
Sbjct: 349 FQKCLSVGMVKEVVRTDSLKGRRGR 373


>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
           a [Homo sapiens]
          Length = 626

 Score =  121 bits (303), Expect = 2e-27
 Identities = 51/85 (60%), Positives = 61/85 (71%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           E  C VCGD  +  HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 289 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 348

Query: 143 FQKCLSVGMKLEAVRADRMRGGRNK 167
           FQKCLSVGM  E VR D ++G R +
Sbjct: 349 FQKCLSVGMVKEVVRTDSLKGRRGR 373


>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
           a [Homo sapiens]
          Length = 626

 Score =  121 bits (303), Expect = 2e-27
 Identities = 51/85 (60%), Positives = 61/85 (71%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           E  C VCGD  +  HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 289 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 348

Query: 143 FQKCLSVGMKLEAVRADRMRGGRNK 167
           FQKCLSVGM  E VR D ++G R +
Sbjct: 349 FQKCLSVGMVKEVVRTDSLKGRRGR 373


>gi|45545429 estrogen-related receptor gamma isoform 2 [Homo
           sapiens]
          Length = 435

 Score =  118 bits (295), Expect = 2e-26
 Identities = 61/139 (43%), Positives = 77/139 (55%), Gaps = 7/139 (5%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           + LC VCGD  SGYHYG+ +CE+CK FFKRT+Q N  Y+C     C+I K +RK C  CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161

Query: 143 FQKCLSVGMKLEAVRADRMRGGRNKF-------GPMYKRDRALKQQKKALIRANGLKLEA 195
           F KCL VGM  E VR DR+RGGR K+          Y   + ++  KK   +     L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221

Query: 196 MSQVIQAMPSDLTISSAIQ 214
             + I AMP      S I+
Sbjct: 222 EPEKIYAMPDPTVPDSDIK 240



 Score =  108 bits (270), Expect = 1e-23
 Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 19/249 (7%)

Query: 294 QTSSPASIPH--LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 351
           Q   PA  P+  ++  LL  EP+      KI A +       S  + L+T   +C +AD+
Sbjct: 202 QLVQPAKKPYNKIVSHLLVAEPE------KIYA-MPDPTVPDSDIKALTT---LCDLADR 251

Query: 352 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQV 411
            L  I+ WA+    F  L + DQM LLQ+ W E+LIL  +YR +    E    LV     
Sbjct: 252 ELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE----LVYAD-- 305

Query: 412 DYSIIASQAG-ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLV 470
           DY +   Q+  A L +L +   +LV K +S++ ++ EFV LK + L + D  ++E+ + V
Sbjct: 306 DYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAV 365

Query: 471 EGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNN 530
           + +Q+ ++ AL DY    + +   + G++L+ LP +R  S +A ++ Y   L G VP + 
Sbjct: 366 QKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHK 425

Query: 531 LLIEMLHAK 539
           L +EML AK
Sbjct: 426 LFLEMLEAK 434


>gi|45545427 estrogen-related receptor gamma isoform 2 [Homo
           sapiens]
          Length = 435

 Score =  118 bits (295), Expect = 2e-26
 Identities = 61/139 (43%), Positives = 77/139 (55%), Gaps = 7/139 (5%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           + LC VCGD  SGYHYG+ +CE+CK FFKRT+Q N  Y+C     C+I K +RK C  CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161

Query: 143 FQKCLSVGMKLEAVRADRMRGGRNKF-------GPMYKRDRALKQQKKALIRANGLKLEA 195
           F KCL VGM  E VR DR+RGGR K+          Y   + ++  KK   +     L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221

Query: 196 MSQVIQAMPSDLTISSAIQ 214
             + I AMP      S I+
Sbjct: 222 EPEKIYAMPDPTVPDSDIK 240



 Score =  108 bits (270), Expect = 1e-23
 Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 19/249 (7%)

Query: 294 QTSSPASIPH--LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 351
           Q   PA  P+  ++  LL  EP+      KI A +       S  + L+T   +C +AD+
Sbjct: 202 QLVQPAKKPYNKIVSHLLVAEPE------KIYA-MPDPTVPDSDIKALTT---LCDLADR 251

Query: 352 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQV 411
            L  I+ WA+    F  L + DQM LLQ+ W E+LIL  +YR +    E    LV     
Sbjct: 252 ELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE----LVYAD-- 305

Query: 412 DYSIIASQAG-ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLV 470
           DY +   Q+  A L +L +   +LV K +S++ ++ EFV LK + L + D  ++E+ + V
Sbjct: 306 DYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAV 365

Query: 471 EGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNN 530
           + +Q+ ++ AL DY    + +   + G++L+ LP +R  S +A ++ Y   L G VP + 
Sbjct: 366 QKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHK 425

Query: 531 LLIEMLHAK 539
           L +EML AK
Sbjct: 426 LFLEMLEAK 434


>gi|45545433 estrogen-related receptor gamma isoform 1 [Homo
           sapiens]
          Length = 458

 Score =  118 bits (295), Expect = 2e-26
 Identities = 61/139 (43%), Positives = 77/139 (55%), Gaps = 7/139 (5%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           + LC VCGD  SGYHYG+ +CE+CK FFKRT+Q N  Y+C     C+I K +RK C  CR
Sbjct: 125 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 184

Query: 143 FQKCLSVGMKLEAVRADRMRGGRNKF-------GPMYKRDRALKQQKKALIRANGLKLEA 195
           F KCL VGM  E VR DR+RGGR K+          Y   + ++  KK   +     L A
Sbjct: 185 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 244

Query: 196 MSQVIQAMPSDLTISSAIQ 214
             + I AMP      S I+
Sbjct: 245 EPEKIYAMPDPTVPDSDIK 263



 Score =  108 bits (270), Expect = 1e-23
 Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 19/249 (7%)

Query: 294 QTSSPASIPH--LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 351
           Q   PA  P+  ++  LL  EP+      KI A +       S  + L+T   +C +AD+
Sbjct: 225 QLVQPAKKPYNKIVSHLLVAEPE------KIYA-MPDPTVPDSDIKALTT---LCDLADR 274

Query: 352 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQV 411
            L  I+ WA+    F  L + DQM LLQ+ W E+LIL  +YR +    E    LV     
Sbjct: 275 ELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE----LVYAD-- 328

Query: 412 DYSIIASQAG-ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLV 470
           DY +   Q+  A L +L +   +LV K +S++ ++ EFV LK + L + D  ++E+ + V
Sbjct: 329 DYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAV 388

Query: 471 EGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNN 530
           + +Q+ ++ AL DY    + +   + G++L+ LP +R  S +A ++ Y   L G VP + 
Sbjct: 389 QKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHK 448

Query: 531 LLIEMLHAK 539
           L +EML AK
Sbjct: 449 LFLEMLEAK 457


>gi|197209821 estrogen-related receptor gamma isoform 2 [Homo
           sapiens]
          Length = 435

 Score =  118 bits (295), Expect = 2e-26
 Identities = 61/139 (43%), Positives = 77/139 (55%), Gaps = 7/139 (5%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           + LC VCGD  SGYHYG+ +CE+CK FFKRT+Q N  Y+C     C+I K +RK C  CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161

Query: 143 FQKCLSVGMKLEAVRADRMRGGRNKF-------GPMYKRDRALKQQKKALIRANGLKLEA 195
           F KCL VGM  E VR DR+RGGR K+          Y   + ++  KK   +     L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221

Query: 196 MSQVIQAMPSDLTISSAIQ 214
             + I AMP      S I+
Sbjct: 222 EPEKIYAMPDPTVPDSDIK 240



 Score =  108 bits (270), Expect = 1e-23
 Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 19/249 (7%)

Query: 294 QTSSPASIPH--LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 351
           Q   PA  P+  ++  LL  EP+      KI A +       S  + L+T   +C +AD+
Sbjct: 202 QLVQPAKKPYNKIVSHLLVAEPE------KIYA-MPDPTVPDSDIKALTT---LCDLADR 251

Query: 352 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQV 411
            L  I+ WA+    F  L + DQM LLQ+ W E+LIL  +YR +    E    LV     
Sbjct: 252 ELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE----LVYAD-- 305

Query: 412 DYSIIASQAG-ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLV 470
           DY +   Q+  A L +L +   +LV K +S++ ++ EFV LK + L + D  ++E+ + V
Sbjct: 306 DYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAV 365

Query: 471 EGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNN 530
           + +Q+ ++ AL DY    + +   + G++L+ LP +R  S +A ++ Y   L G VP + 
Sbjct: 366 QKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHK 425

Query: 531 LLIEMLHAK 539
           L +EML AK
Sbjct: 426 LFLEMLEAK 434


>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
           sapiens]
          Length = 598

 Score =  117 bits (294), Expect = 2e-26
 Identities = 55/109 (50%), Positives = 70/109 (64%), Gaps = 2/109 (1%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           E  C VCGD  S  HYG+ TCE CKGFFKRTVQ N +Y C+ N++C +DK +R RC +CR
Sbjct: 264 EGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCR 323

Query: 143 FQKCLSVGMKLEAVRADRMRG--GRNKFGPMYKRDRALKQQKKALIRAN 189
           FQKCL+VGM  E VR D ++G  GR    P    D +      +L+RA+
Sbjct: 324 FQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAH 372



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 356 IVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSI 415
           I +WA     F EL   DQ  LL++ + EL IL   YR      EG +   +G  +    
Sbjct: 417 IRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRS--KPGEGKLIFCSGLVLHRLQ 474

Query: 416 IASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQE 475
            A   G  ++++++ ++ L     SL  D   F CL  LVL + D   L+  + VE +Q 
Sbjct: 475 CARGFGDWIDSILAFSRSL----HSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQN 529

Query: 476 QVNAALLDYT--MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
           ++ + L ++   +   PQ      +LL +LPE+R +  Q  + ++Y  L   VP
Sbjct: 530 RIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVP 583


>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
           sapiens]
          Length = 598

 Score =  117 bits (294), Expect = 2e-26
 Identities = 55/109 (50%), Positives = 70/109 (64%), Gaps = 2/109 (1%)

Query: 83  EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 142
           E  C VCGD  S  HYG+ TCE CKGFFKRTVQ N +Y C+ N++C +DK +R RC +CR
Sbjct: 264 EGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCR 323

Query: 143 FQKCLSVGMKLEAVRADRMRG--GRNKFGPMYKRDRALKQQKKALIRAN 189
           FQKCL+VGM  E VR D ++G  GR    P    D +      +L+RA+
Sbjct: 324 FQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAH 372



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 356 IVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSI 415
           I +WA     F EL   DQ  LL++ + EL IL   YR      EG +   +G  +    
Sbjct: 417 IRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRS--KPGEGKLIFCSGLVLHRLQ 474

Query: 416 IASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQE 475
            A   G  ++++++ ++ L     SL  D   F CL  LVL + D   L+  + VE +Q 
Sbjct: 475 CARGFGDWIDSILAFSRSL----HSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQN 529

Query: 476 QVNAALLDYT--MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
           ++ + L ++   +   PQ      +LL +LPE+R +  Q  + ++Y  L   VP
Sbjct: 530 RIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVP 583


>gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Homo
           sapiens]
          Length = 404

 Score =  117 bits (293), Expect = 3e-26
 Identities = 70/193 (36%), Positives = 105/193 (54%), Gaps = 5/193 (2%)

Query: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 403
           +C++A + LFS VEWAR + FF EL V DQ+ LL+  WSEL +L+     + +H      
Sbjct: 202 VCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP--- 258

Query: 404 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 463
            L+    +  + +A++      + +   QE V KL  LQ D  E+ CLK + LF+ D   
Sbjct: 259 -LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACG 317

Query: 464 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 523
           L +   VE +QE+   AL +Y    YP Q ++FG+LLLRLP +RA+       L++  L 
Sbjct: 318 LSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLV 377

Query: 524 GDVPYNNLLIEML 536
           G  P   L+ +ML
Sbjct: 378 GKTPIETLIRDML 390



 Score =  104 bits (259), Expect = 2e-22
 Identities = 43/76 (56%), Positives = 55/76 (72%)

Query: 86  CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 145
           C VCGDK SG HYG+ TCE CK FFKR+++ N  YTC  N++CQID+  R +C YCR +K
Sbjct: 56  CVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKK 115

Query: 146 CLSVGMKLEAVRADRM 161
           C  VGM+ EAV+  R+
Sbjct: 116 CFRVGMRKEAVQRGRI 131


>gi|223555953 nuclear receptor subfamily 2, group F, member 2
           isoform c [Homo sapiens]
          Length = 261

 Score =  117 bits (292), Expect = 3e-26
 Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 403
           +C++A + LFS VEWAR+  FF +L++ DQ+ LL+  WSEL +L+     + +H      
Sbjct: 59  ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP--- 115

Query: 404 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 463
            L+    +  S +++       + +   QE V KL++L  D  E+ CLK +VLF+ D   
Sbjct: 116 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 174

Query: 464 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 523
           L +   VE +QE+   AL +Y    YP Q  +FG+LLLRLP +R +S    E L++  L 
Sbjct: 175 LSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 234

Query: 524 GDVPYNNLLIEML 536
           G  P   L+ +ML
Sbjct: 235 GKTPIETLIRDML 247


>gi|223555951 nuclear receptor subfamily 2, group F, member 2
           isoform c [Homo sapiens]
          Length = 261

 Score =  117 bits (292), Expect = 3e-26
 Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 403
           +C++A + LFS VEWAR+  FF +L++ DQ+ LL+  WSEL +L+     + +H      
Sbjct: 59  ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP--- 115

Query: 404 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 463
            L+    +  S +++       + +   QE V KL++L  D  E+ CLK +VLF+ D   
Sbjct: 116 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 174

Query: 464 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 523
           L +   VE +QE+   AL +Y    YP Q  +FG+LLLRLP +R +S    E L++  L 
Sbjct: 175 LSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 234

Query: 524 GDVPYNNLLIEML 536
           G  P   L+ +ML
Sbjct: 235 GKTPIETLIRDML 247


>gi|223555949 nuclear receptor subfamily 2, group F, member 2
           isoform b [Homo sapiens]
          Length = 281

 Score =  117 bits (292), Expect = 3e-26
 Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 403
           +C++A + LFS VEWAR+  FF +L++ DQ+ LL+  WSEL +L+     + +H      
Sbjct: 79  ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP--- 135

Query: 404 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 463
            L+    +  S +++       + +   QE V KL++L  D  E+ CLK +VLF+ D   
Sbjct: 136 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 194

Query: 464 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 523
           L +   VE +QE+   AL +Y    YP Q  +FG+LLLRLP +R +S    E L++  L 
Sbjct: 195 LSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 254

Query: 524 GDVPYNNLLIEML 536
           G  P   L+ +ML
Sbjct: 255 GKTPIETLIRDML 267


>gi|14149746 nuclear receptor subfamily 2, group F, member 2 isoform
           a [Homo sapiens]
          Length = 414

 Score =  117 bits (292), Expect = 3e-26
 Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 403
           +C++A + LFS VEWAR+  FF +L++ DQ+ LL+  WSEL +L+     + +H      
Sbjct: 212 ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP--- 268

Query: 404 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 463
            L+    +  S +++       + +   QE V KL++L  D  E+ CLK +VLF+ D   
Sbjct: 269 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 327

Query: 464 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 523
           L +   VE +QE+   AL +Y    YP Q  +FG+LLLRLP +R +S    E L++  L 
Sbjct: 328 LSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 387

Query: 524 GDVPYNNLLIEML 536
           G  P   L+ +ML
Sbjct: 388 GKTPIETLIRDML 400



 Score =  106 bits (264), Expect = 6e-23
 Identities = 46/76 (60%), Positives = 54/76 (71%)

Query: 86  CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 145
           C VCGDK SG HYG  TCE CK FFKR+V+ N  YTC  N+NC ID+  R +C YCR +K
Sbjct: 79  CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138

Query: 146 CLSVGMKLEAVRADRM 161
           CL VGM+ EAV+  RM
Sbjct: 139 CLKVGMRREAVQRGRM 154


>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
           sapiens]
          Length = 423

 Score =  117 bits (292), Expect = 3e-26
 Identities = 68/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)

Query: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 403
           +C++A + LFS VEWAR+  FF +L++ DQ+ LL+  WSEL +L+     + +H      
Sbjct: 219 ICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAP--- 275

Query: 404 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 463
            L+    +  S +++       + +   QE V KL++L  D  E+ CLK +VLF+ D   
Sbjct: 276 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 334

Query: 464 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 523
           L +   +E +QE+   AL +Y    YP Q  +FG+LLLRLP +R +S    E L++  L 
Sbjct: 335 LSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 394

Query: 524 GDVPYNNLLIEML 536
           G  P   L+ +ML
Sbjct: 395 GKTPIETLIRDML 407



 Score =  107 bits (266), Expect = 4e-23
 Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 11/105 (10%)

Query: 57  GEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN 116
           G++GQ P     SQ         + +E  C VCGDK SG HYG  TCE CK FFKR+V+ 
Sbjct: 68  GDKGQGPPGSGQSQ---------QHIE--CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRR 116

Query: 117 NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRM 161
           N  YTC  N+NC ID+  R +C YCR +KCL VGM+ EAV+  RM
Sbjct: 117 NLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRM 161


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,459,755
Number of Sequences: 37866
Number of extensions: 930249
Number of successful extensions: 2750
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2414
Number of HSP's gapped (non-prelim): 252
length of query: 541
length of database: 18,247,518
effective HSP length: 107
effective length of query: 434
effective length of database: 14,195,856
effective search space: 6161001504
effective search space used: 6161001504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.