BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|45238845 urocortin 3 preproprotein [Homo sapiens] (161 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|45238845 urocortin 3 preproprotein [Homo sapiens] 323 5e-89 gi|15082240 urocortin 2 preproprotein [Homo sapiens] 39 0.003 gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo... 32 0.18 gi|187829485 autism susceptibility candidate 2 isoform 3 [Homo s... 30 1.2 gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 30 1.2 gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 30 1.2 gi|221316599 chromogranin B precursor [Homo sapiens] 29 1.5 gi|4507803 urocortin preproprotein [Homo sapiens] 29 2.0 gi|167234422 hematopoietic cell-specific Lyn substrate 1 [Homo s... 28 2.6 gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 28 3.4 gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s... 28 3.4 gi|124378039 SEC16 homolog A [Homo sapiens] 28 3.4 gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 28 3.4 gi|4503041 corticotropin releasing hormone precursor [Homo sapiens] 28 4.5 gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] 28 4.5 gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] 28 4.5 gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] 28 4.5 gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens] 28 4.5 gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] 28 4.5 gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens] 28 4.5 gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 28 4.5 gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 28 4.5 gi|60097902 filaggrin [Homo sapiens] 27 5.8 gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens] 27 5.8 gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 27 5.8 gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 27 5.8 gi|21314720 Smad nuclear interacting protein [Homo sapiens] 27 5.8 gi|148922889 scleraxis homolog B [Homo sapiens] 27 7.6 gi|239753937 PREDICTED: similar to hCG2036828 [Homo sapiens] 27 7.6 gi|25952134 dispatched A [Homo sapiens] 27 7.6 >gi|45238845 urocortin 3 preproprotein [Homo sapiens] Length = 161 Score = 323 bits (827), Expect = 5e-89 Identities = 161/161 (100%), Positives = 161/161 (100%) Query: 1 MLMPVHFLLLLLLLLGGPRTGLPHKFYKAKPIFSCLNTALSEAEKGQWEDASLLSKRSFH 60 MLMPVHFLLLLLLLLGGPRTGLPHKFYKAKPIFSCLNTALSEAEKGQWEDASLLSKRSFH Sbjct: 1 MLMPVHFLLLLLLLLGGPRTGLPHKFYKAKPIFSCLNTALSEAEKGQWEDASLLSKRSFH 60 Query: 61 YLRSRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSPHRTKF 120 YLRSRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSPHRTKF Sbjct: 61 YLRSRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSPHRTKF 120 Query: 121 TLSLDVPTNIMNLLFNIAKAKNLRAQAAANAHLMAQIGRKK 161 TLSLDVPTNIMNLLFNIAKAKNLRAQAAANAHLMAQIGRKK Sbjct: 121 TLSLDVPTNIMNLLFNIAKAKNLRAQAAANAHLMAQIGRKK 161 >gi|15082240 urocortin 2 preproprotein [Homo sapiens] Length = 112 Score = 38.5 bits (88), Expect = 0.003 Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 118 TKFTLSLDVPTNIMNLLFNIAKAKNLRAQAAANAHLMAQIG 158 ++ LSLDVP ++ +L A+A+ R QA NA ++A++G Sbjct: 70 SRIVLSLDVPIGLLQILLEQARARAAREQATTNARILARVG 110 >gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo sapiens] Length = 1483 Score = 32.3 bits (72), Expect = 0.18 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 16/101 (15%) Query: 35 CLNTALSEAEKGQWEDASLLSKRSFHYLRSR----------------DASSGEEEEGKEK 78 CL AL E G+W+ + + R R D EEEE +E+ Sbjct: 1213 CLRPALYEVPDGEWQCPACQPATARRNSRGRNYTEESASEDSEDDESDEEEEEEEEEEEE 1272 Query: 79 KTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSPHRTK 119 + + ++G R R T S P + + K PH T+ Sbjct: 1273 EDYEVAGLRLRPRKTIRGKHSVIPPAARSGRRPGKKPHSTR 1313 >gi|187829485 autism susceptibility candidate 2 isoform 3 [Homo sapiens] Length = 266 Score = 29.6 bits (65), Expect = 1.2 Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 60 HYLRSRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSP 115 H LR + S + + + + +GA GG R R +S A G ++D K P Sbjct: 8 HGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP 63 >gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo sapiens] Length = 1235 Score = 29.6 bits (65), Expect = 1.2 Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 60 HYLRSRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSP 115 H LR + S + + + + +GA GG R R +S A G ++D K P Sbjct: 8 HGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP 63 >gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sapiens] Length = 1259 Score = 29.6 bits (65), Expect = 1.2 Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 60 HYLRSRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSP 115 H LR + S + + + + +GA GG R R +S A G ++D K P Sbjct: 8 HGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPP 63 >gi|221316599 chromogranin B precursor [Homo sapiens] Length = 677 Score = 29.3 bits (64), Expect = 1.5 Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 13/119 (10%) Query: 19 RTGLPHKFYKAKPIFSCLNTALSEAEKGQWED---------ASLLSKRSFHYLRSRDASS 69 RT H +++P S +L EKG ++ ASL KR H R AS Sbjct: 278 RTRPRHHHGRSRPDRSSQGGSLPSEEKGHPQEESEESNVSMASLGEKRDHHSTHYR-ASE 336 Query: 70 GEEEEGKEKKTFPISGARGGARGTRYRYVSQAQ---PRGKPRQDTAKSPHRTKFTLSLD 125 E E G+E K +P A RYR + PR + + + R +L LD Sbjct: 337 EEPEYGEEIKGYPGVQAPEDLEWERYRGRGSEEYRAPRPQSEESWDEEDKRNYPSLELD 395 >gi|4507803 urocortin preproprotein [Homo sapiens] Length = 124 Score = 28.9 bits (63), Expect = 2.0 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Query: 85 GAR---GGARGTRY----RYVSQAQPRGKPRQDTAKSPHRTKFTLSLDVPTNIMNLLFNI 137 GAR GGAR R+ +A P + P R +LS+D+ +++ L + Sbjct: 43 GARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLEL 102 Query: 138 AKAKNLRAQAAANAHLMAQIGR 159 A+ ++ R +A N + +G+ Sbjct: 103 ARTQSQRERAEQNRIIFDSVGK 124 >gi|167234422 hematopoietic cell-specific Lyn substrate 1 [Homo sapiens] Length = 486 Score = 28.5 bits (62), Expect = 2.6 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 78 KKTFPISGARGGARGTRYRYVSQAQPRGKPRQD 110 KKT PI A G RG + ++ S A+ + K ++ Sbjct: 223 KKTTPIEAASSGTRGLKAKFESMAEEKRKREEE 255 >gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo sapiens] Length = 2506 Score = 28.1 bits (61), Expect = 3.4 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 23/106 (21%) Query: 16 GGPRTGLP--HKFYKAKPIFSCLNTALSEAEKGQWEDASLLSKRSFHYLRSRDASSGEEE 73 G PRTG H+ ++A E+G + A +R+ H SR A GE E Sbjct: 945 GSPRTGADGEHRRHRAHR---------RPGEEGPEDKAE---RRARHREGSRPARGGEGE 992 Query: 74 EGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSPHRTK 119 G GG R R+R+ + A G R++ + HR + Sbjct: 993 G---------EGPDGGERRRRHRHGAPATYEGDARREDKERRHRRR 1029 >gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo sapiens] Length = 2261 Score = 28.1 bits (61), Expect = 3.4 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 23/106 (21%) Query: 16 GGPRTGLP--HKFYKAKPIFSCLNTALSEAEKGQWEDASLLSKRSFHYLRSRDASSGEEE 73 G PRTG H+ ++A E+G + A +R+ H SR A GE E Sbjct: 946 GSPRTGADGEHRRHRAHR---------RPGEEGPEDKAE---RRARHREGSRPARGGEGE 993 Query: 74 EGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSPHRTK 119 G GG R R+R+ + A G R++ + HR + Sbjct: 994 G---------EGPDGGERRRRHRHGAPATYEGDARREDKERRHRRR 1030 >gi|124378039 SEC16 homolog A [Homo sapiens] Length = 2357 Score = 28.1 bits (61), Expect = 3.4 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 82 PISGARGGARGTRYRYVSQAQPRGKPRQDTAKSPHRTKFTLS-LDVPTNI 130 P++ A GTR RYV P G R + A +P L+ L +P+N+ Sbjct: 2178 PVNMYSRRAAGTRARYVDVLNPSGTQRSEPALAPADFVAPLAPLPIPSNL 2227 >gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapiens] Length = 1478 Score = 28.1 bits (61), Expect = 3.4 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Query: 49 EDASLLSKRSFHYLRSRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPR 108 +DA + R L + A +E+E ++K A G G + + ++QA+ R + Sbjct: 934 QDAKEAASREREGLERQVAGLQQEKESLQEKLKAAKAAAGSLPGLQAQ-LAQAEQRAQSL 992 Query: 109 QDTAKSPHRT-KFTLSLDVPTNIMNLLFNIAKAKNLRAQ 146 Q+ A T KF LS ++ L + K+LR Q Sbjct: 993 QEAAHQELNTLKFQLSAEIMDYQSRLKNAGEECKSLRGQ 1031 >gi|4503041 corticotropin releasing hormone precursor [Homo sapiens] Length = 196 Score = 27.7 bits (60), Expect = 4.5 Identities = 13/38 (34%), Positives = 24/38 (63%) Query: 122 LSLDVPTNIMNLLFNIAKAKNLRAQAAANAHLMAQIGR 159 +SLD+ +++ + +A+A+ L QA +N LM IG+ Sbjct: 159 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIGK 196 >gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] Length = 2355 Score = 27.7 bits (60), Expect = 4.5 Identities = 14/34 (41%), Positives = 16/34 (47%) Query: 98 VSQAQPRGKPRQDTAKSPHRTKFTLSLDVPTNIM 131 V Q + G PR DT SP +F DV IM Sbjct: 893 VIQQETTGTPRSDTVPSPRDLQFVEVTDVKVTIM 926 >gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] Length = 2477 Score = 27.7 bits (60), Expect = 4.5 Identities = 14/34 (41%), Positives = 16/34 (47%) Query: 98 VSQAQPRGKPRQDTAKSPHRTKFTLSLDVPTNIM 131 V Q + G PR DT SP +F DV IM Sbjct: 893 VIQQETTGTPRSDTVPSPRDLQFVEVTDVKVTIM 926 >gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] Length = 2330 Score = 27.7 bits (60), Expect = 4.5 Identities = 14/34 (41%), Positives = 16/34 (47%) Query: 98 VSQAQPRGKPRQDTAKSPHRTKFTLSLDVPTNIM 131 V Q + G PR DT SP +F DV IM Sbjct: 893 VIQQETTGTPRSDTVPSPRDLQFVEVTDVKVTIM 926 >gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens] Length = 2296 Score = 27.7 bits (60), Expect = 4.5 Identities = 14/34 (41%), Positives = 16/34 (47%) Query: 98 VSQAQPRGKPRQDTAKSPHRTKFTLSLDVPTNIM 131 V Q + G PR DT SP +F DV IM Sbjct: 893 VIQQETTGTPRSDTVPSPRDLQFVEVTDVKVTIM 926 >gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] Length = 2421 Score = 27.7 bits (60), Expect = 4.5 Identities = 14/34 (41%), Positives = 16/34 (47%) Query: 98 VSQAQPRGKPRQDTAKSPHRTKFTLSLDVPTNIM 131 V Q + G PR DT SP +F DV IM Sbjct: 893 VIQQETTGTPRSDTVPSPRDLQFVEVTDVKVTIM 926 >gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens] Length = 2176 Score = 27.7 bits (60), Expect = 4.5 Identities = 14/34 (41%), Positives = 16/34 (47%) Query: 98 VSQAQPRGKPRQDTAKSPHRTKFTLSLDVPTNIM 131 V Q + G PR DT SP +F DV IM Sbjct: 893 VIQQETTGTPRSDTVPSPRDLQFVEVTDVKVTIM 926 >gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo sapiens] Length = 271 Score = 27.7 bits (60), Expect = 4.5 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Query: 80 TFPISGAR--GGARGTRYRYVSQAQPRGKPRQD 110 T P GA+ GG R T R ++AQPRG+ +D Sbjct: 4 TAPFGGAQEAGGRRLTSRRENARAQPRGRAEED 36 >gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] Length = 1215 Score = 27.7 bits (60), Expect = 4.5 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 89 GARGTRYRYVSQAQPRG-KPRQDTAKSPHRTKFTLSLD 125 G G+ ++ A P+G QD++ PHRT FT +++ Sbjct: 483 GNHGSELPNLTNALPQGANANQDSSNRPHRTVFTRAIE 520 >gi|60097902 filaggrin [Homo sapiens] Length = 4061 Score = 27.3 bits (59), Expect = 5.8 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 42 EAEKGQWEDASLLSKRSFHYLRSRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQA 101 E+ +GQ ++S S RSF Y SS E+ E +T P +G R G+R + R S Sbjct: 1425 ESARGQSGESSGRS-RSFLY----QVSSHEQSESTHGQTAPSTGGRQGSRHEQARN-SSR 1478 Query: 102 QPRGKPRQDTAK 113 + QDT + Sbjct: 1479 HSASQDGQDTIR 1490 >gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens] Length = 1621 Score = 27.3 bits (59), Expect = 5.8 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%) Query: 68 SSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRG------KPRQDTAKSPHRTKFT 121 S + E G KKT + +G RG + R S ++ G K + T+K P +T F Sbjct: 1517 SDSDSEFGIPKKT---TTPKGKGRGAKKRKASGSENEGDYNPGRKTSKTTSKKPKKTSFD 1573 Query: 122 LSLDV 126 DV Sbjct: 1574 QDSDV 1578 >gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4 [Homo sapiens] Length = 3321 Score = 27.3 bits (59), Expect = 5.8 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 67 ASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSPHRTKFTLSLDV 126 A E+EEG++ K F + GA G G SQ + GK D+ +T+ + Sbjct: 2826 ALPSEDEEGQDDKDFYLRGA-VGLSGDHSALESQIRQLGKALDDSRFQIQQTENIIRSKT 2884 Query: 127 PT 128 PT Sbjct: 2885 PT 2886 >gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1 [Homo sapiens] Length = 8797 Score = 27.3 bits (59), Expect = 5.8 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 67 ASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKSPHRTKFTLSLDV 126 A E+EEG++ K F + GA G G SQ + GK D+ +T+ + Sbjct: 8302 ALPSEDEEGQDDKDFYLRGA-VGLSGDHSALESQIRQLGKALDDSRFQIQQTENIIRSKT 8360 Query: 127 PT 128 PT Sbjct: 8361 PT 8362 >gi|21314720 Smad nuclear interacting protein [Homo sapiens] Length = 396 Score = 27.3 bits (59), Expect = 5.8 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 10/43 (23%) Query: 86 ARGGARGTRYRYVSQAQPRGK----------PRQDTAKSPHRT 118 AR G RG R R VS++ P+ K PR +SPH + Sbjct: 61 ARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHS 103 >gi|148922889 scleraxis homolog B [Homo sapiens] Length = 201 Score = 26.9 bits (58), Expect = 7.6 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 15/105 (14%) Query: 64 SRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQ--------AQPRGKPRQDTAKSP 115 S D G + G ++K + AR G +G R R + +P +PRQ + Sbjct: 23 SEDEDRGSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTANA 82 Query: 116 HRTKFTLSLDVPTNIMNLLF-------NIAKAKNLRAQAAANAHL 153 T S++ + L ++K + LR ++ +HL Sbjct: 83 RERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHL 127 >gi|239753937 PREDICTED: similar to hCG2036828 [Homo sapiens] Length = 275 Score = 26.9 bits (58), Expect = 7.6 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 63 RSRDASSGEEEEGKEKKTFPISGARGGARGTRYRYVSQAQPRGKPRQDTAKS 114 ++++ EEEEG + FP + + G RG+R + + + +P A S Sbjct: 40 KAQEEEEAEEEEGNRR--FPNTLSEGAVRGSRLSALGRPRRESEPGLSAAPS 89 >gi|25952134 dispatched A [Homo sapiens] Length = 1524 Score = 26.9 bits (58), Expect = 7.6 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Query: 17 GPRTGLPHKFYKAKPIFSCLNTALSEAEKGQWEDASLLSK 56 GP++ L H+FY+ +P+ S TA EK +E+ + S+ Sbjct: 1182 GPKSELEHEFYELEPLASHSCTA---PEKTTYEETHICSE 1218 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,997,031 Number of Sequences: 37866 Number of extensions: 256870 Number of successful extensions: 978 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 954 Number of HSP's gapped (non-prelim): 41 length of query: 161 length of database: 18,247,518 effective HSP length: 94 effective length of query: 67 effective length of database: 14,688,114 effective search space: 984103638 effective search space used: 984103638 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.