Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 4507947

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507947 tyrosyl-tRNA synthetase [Homo sapiens]
         (528 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507947 tyrosyl-tRNA synthetase [Homo sapiens]                    1051   0.0  
gi|215490011 small inducible cytokine subfamily E, member 1 isof...   170   3e-42
gi|215490009 small inducible cytokine subfamily E, member 1 isof...   170   3e-42
gi|45006986 small inducible cytokine subfamily E, member 1 isofo...   170   3e-42
gi|47419920 tryptophanyl-tRNA synthetase isoform b [Homo sapiens]      39   0.012
gi|47419918 tryptophanyl-tRNA synthetase isoform b [Homo sapiens]      39   0.012
gi|47419916 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]      39   0.012
gi|47419914 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]      39   0.012
gi|191251777 breast carcinoma amplified sequence 1 [Homo sapiens]      36   0.099
gi|110349719 titin isoform N2-A [Homo sapiens]                         35   0.17 
gi|157266317 ataxia telangiectasia and Rad3 related protein [Hom...    33   0.49 
gi|169218238 PREDICTED: similar to ataxia telangiectasia and Rad...    33   0.49 
gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens]              32   1.1  
gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens]              32   1.1  
gi|19913414 adaptor-related protein complex 2, alpha 1 subunit i...    32   1.1  
gi|19913416 adaptor-related protein complex 2, alpha 1 subunit i...    32   1.1  
gi|21361176 aldehyde dehydrogenase 1A1 [Homo sapiens]                  32   1.4  
gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]           31   3.2  
gi|144953876 signal-regulatory protein beta 1 isoform 1 precurso...    30   4.2  
gi|144953878 signal-regulatory protein beta 1 isoform 2 precurso...    30   4.2  
gi|209529703 signal-regulatory protein beta 1 isoform 3 precurso...    30   5.4  
gi|7661990 mastermind-like 1 [Homo sapiens]                            30   5.4  
gi|239755097 PREDICTED: hypothetical protein XP_002346214 [Homo ...    30   7.1  
gi|239749610 PREDICTED: hypothetical protein XP_002347102 [Homo ...    30   7.1  
gi|87299628 biorientation of chromosomes in cell division 1-like...    29   9.3  
gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [H...    29   9.3  
gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [H...    29   9.3  
gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [H...    29   9.3  
gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precurs...    29   9.3  
gi|14717403 protocadherin alpha subfamily C, 1 isoform 2 precurs...    29   9.3  

>gi|4507947 tyrosyl-tRNA synthetase [Homo sapiens]
          Length = 528

 Score = 1051 bits (2719), Expect = 0.0
 Identities = 528/528 (100%), Positives = 528/528 (100%)

Query: 1   MGDAPSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIA 60
           MGDAPSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIA
Sbjct: 1   MGDAPSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIA 60

Query: 61  DFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKG 120
           DFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKG
Sbjct: 61  DFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKG 120

Query: 121 TDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD 180
           TDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD
Sbjct: 121 TDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD 180

Query: 181 AQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKED 240
           AQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKED
Sbjct: 181 AQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKED 240

Query: 241 VKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFA 300
           VKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFA
Sbjct: 241 VKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFA 300

Query: 301 AEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEP 360
           AEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEP
Sbjct: 301 AEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEP 360

Query: 361 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 420
           EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV
Sbjct: 361 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 420

Query: 421 VVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEE 480
           VVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEE
Sbjct: 421 VVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEE 480

Query: 481 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528
           LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS
Sbjct: 481 LKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528


>gi|215490011 small inducible cytokine subfamily E, member 1 isoform
           b precursor [Homo sapiens]
          Length = 336

 Score =  170 bits (430), Expect = 3e-42
 Identities = 86/171 (50%), Positives = 121/171 (70%), Gaps = 6/171 (3%)

Query: 343 DPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTV 402
           +  ++K  +   + +S+P +V  SRLD+R+G IIT  KHPDADSLYVE++DVGE  PRTV
Sbjct: 156 EKKEKKQQSIAGSADSKPIDV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTV 213

Query: 403 VSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSA 462
           VSGLV  VP E++Q+R+V++LCNLKP KMRGV SQ M++CAS      ++E L PP GS 
Sbjct: 214 VSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSV 270

Query: 463 PGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTK 513
           PG+ +    +  G+PD+EL PKKK++E++Q D   ++EC+A +K   F  K
Sbjct: 271 PGDRITFDAF-PGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVK 320


>gi|215490009 small inducible cytokine subfamily E, member 1 isoform
           a precursor [Homo sapiens]
          Length = 312

 Score =  170 bits (430), Expect = 3e-42
 Identities = 86/171 (50%), Positives = 121/171 (70%), Gaps = 6/171 (3%)

Query: 343 DPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTV 402
           +  ++K  +   + +S+P +V  SRLD+R+G IIT  KHPDADSLYVE++DVGE  PRTV
Sbjct: 132 EKKEKKQQSIAGSADSKPIDV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTV 189

Query: 403 VSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSA 462
           VSGLV  VP E++Q+R+V++LCNLKP KMRGV SQ M++CAS      ++E L PP GS 
Sbjct: 190 VSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSV 246

Query: 463 PGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTK 513
           PG+ +    +  G+PD+EL PKKK++E++Q D   ++EC+A +K   F  K
Sbjct: 247 PGDRITFDAF-PGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVK 296


>gi|45006986 small inducible cytokine subfamily E, member 1 isoform
           a precursor [Homo sapiens]
          Length = 312

 Score =  170 bits (430), Expect = 3e-42
 Identities = 86/171 (50%), Positives = 121/171 (70%), Gaps = 6/171 (3%)

Query: 343 DPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTV 402
           +  ++K  +   + +S+P +V  SRLD+R+G IIT  KHPDADSLYVE++DVGE  PRTV
Sbjct: 132 EKKEKKQQSIAGSADSKPIDV--SRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTV 189

Query: 403 VSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSA 462
           VSGLV  VP E++Q+R+V++LCNLKP KMRGV SQ M++CAS      ++E L PP GS 
Sbjct: 190 VSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSP---EKIEILAPPNGSV 246

Query: 463 PGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTK 513
           PG+ +    +  G+PD+EL PKKK++E++Q D   ++EC+A +K   F  K
Sbjct: 247 PGDRITFDAF-PGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVK 296


>gi|47419920 tryptophanyl-tRNA synthetase isoform b [Homo sapiens]
          Length = 430

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 186 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKK 243
           IDQ   F       P +GY K   L +   P L G  +KMS+S+  S I L D  + +K 
Sbjct: 270 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 329

Query: 244 KLKK 247
           K+ K
Sbjct: 330 KVNK 333


>gi|47419918 tryptophanyl-tRNA synthetase isoform b [Homo sapiens]
          Length = 430

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 186 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKK 243
           IDQ   F       P +GY K   L +   P L G  +KMS+S+  S I L D  + +K 
Sbjct: 270 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 329

Query: 244 KLKK 247
           K+ K
Sbjct: 330 KVNK 333


>gi|47419916 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]
          Length = 471

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 186 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKK 243
           IDQ   F       P +GY K   L +   P L G  +KMS+S+  S I L D  + +K 
Sbjct: 311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370

Query: 244 KLKK 247
           K+ K
Sbjct: 371 KVNK 374


>gi|47419914 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]
          Length = 471

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 186 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKK 243
           IDQ   F       P +GY K   L +   P L G  +KMS+S+  S I L D  + +K 
Sbjct: 311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370

Query: 244 KLKK 247
           K+ K
Sbjct: 371 KVNK 374


>gi|191251777 breast carcinoma amplified sequence 1 [Homo sapiens]
          Length = 584

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 72/322 (22%), Positives = 123/322 (38%), Gaps = 52/322 (16%)

Query: 215 VPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKAFCE-PGNVE----------------- 256
           VPGL+G    S +  +  D++D KE   ++L  A C  PG+ E                 
Sbjct: 227 VPGLSGQ---SDDVPAGKDIVDGKEKEGQELGTADCSVPGDPEGLETAKDDSQAAAIAEN 283

Query: 257 NNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFA--AEVVHPGDLKNSVE 314
           NN ++SF K ++ P K+E      E  G  K+ T   DL+ D A        G  KNS  
Sbjct: 284 NNSIMSFFKTLVSPNKAE-TKKDPEDTGAEKSPTTSADLKSDKANFTSQETQGAGKNS-- 340

Query: 315 VALNKLLDPI--REKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPEEVIPSRLDIRV 372
               K  +P    +   TP   K  +     P+   P+ K   K S  E+ +P+  +  V
Sbjct: 341 ----KGCNPSGHTQSVTTPEPAKEGTKEKSGPT-SLPLGKLFWKKSVKEDSVPTGAEENV 395

Query: 373 ---GKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDR--LVVVLCNLK 427
                +  ++      +L    ++ G+A P    + L     +EE + R  L+  L  + 
Sbjct: 396 VCESPVEIIKSKEVESALQTVDLNEGDAAPEPTEAKL----KREESKPRTSLMAFLRQMS 451

Query: 428 PQKMRGVESQGML-----LCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELK 482
            +   G+     +      C + +   + + P +P    AP      KG E    D++  
Sbjct: 452 VKGDGGITHSEEINGKDSSCQTSDSTEKTITPPEPEPTGAP-----QKGKEGSSKDKKSA 506

Query: 483 PKKKVFEKLQADFKISEECIAQ 504
            +    +  + + K   +C  Q
Sbjct: 507 AEMNKQKSNKQEAKEPAQCTEQ 528


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 12/150 (8%)

Query: 342   PDPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRT 401
             P   +++P    PA   EP+++IP +   +V  I   E  P  +    + I+  + +PR 
Sbjct: 10825 PVAEEEEPEVPPPAVPEEPKKIIPEK---KVPVIKKPEAPPPKEPEPEKVIEKPKLKPRP 10881

Query: 402   VVSGLVQFVPKEELQDRLVVVLCNLK---PQKMRGVESQGMLLCASIEGINRQVEPLDPP 458
                      PKE++++++  +    K   P+K + V  +  L    + G  ++V  L P 
Sbjct: 10882 PPPPPAP--PKEDVKEKIFQLKAIPKKKVPEKPQ-VPEKVELTPLKVPGGEKKVRKLLPE 10938

Query: 459   AGSAPGEHVFVKGYEKGQPDEE---LKPKK 485
                 P E V +K   + +P+EE   ++PKK
Sbjct: 10939 RKPEPKEEVVLKSVLRKRPEEEEPKVEPKK 10968



 Score = 32.7 bits (73), Expect = 0.84
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 5/165 (3%)

Query: 326   EKFNTPALKKLAS--AAYPD-PSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHP 382
             EK   P  KK+ +  A  P+ P K  P  K P    +  E  P+++     K+I  EK P
Sbjct: 10015 EKVPVPVPKKVEAPPAKVPEVPKKPVPEKKVPVPAPKKVEAPPAKVPEVPKKLIPEEKKP 10074

Query: 383   DADSLYVEKIDVGEAEPRTVVSGLVQFVPKEE-LQDRLVVVLCNLKPQKMRGVESQGMLL 441
                   VE       + R  V   V    +EE L +  +V    + P++   +  +  +L
Sbjct: 10075 TPVPKKVEAPPPKVPKKREPVPVPVALPQEEEVLFEEEIVPEEEVLPEEEEVLPEEEEVL 10134

Query: 442   CASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKK 486
                 E +  + E + P     P E  +V   E+  P+EE+ P+ K
Sbjct: 10135 -PEEEEVLPEEEEIPPEEEEVPPEEEYVPEEEEFVPEEEVLPEVK 10178


>gi|157266317 ataxia telangiectasia and Rad3 related protein [Homo
           sapiens]
          Length = 2644

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 60  ADFLKAG-CEVTILFADLHAYLDNMKAPWE-LLELRVSYYENVIKAMLESIGVPLEKLKF 117
           +D LKA  C +      L  +L  + A +E  L++R  Y  N+ KA+L+ +G+ ++  ++
Sbjct: 339 SDLLKAALCHL------LQYFLKFVPAGYESALQVRKVYVRNICKALLDVLGIEVD-AEY 391

Query: 118 IKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQA--LDEE 175
           + G  Y   K  ++++       TQ ++  + ++ +   +   LS  L P  +A    EE
Sbjct: 392 LLGPLYAALKMESMEIIEEIQCQTQQENLSSNSDGISP-KRRRLSSSLNPSKRAPKQTEE 450

Query: 176 YLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG 220
              VD     I    +   AE    +L YS    L NP++  L G
Sbjct: 451 IKHVDMNQKSILWSALKQKAESLQISLEYS---GLKNPVIEMLEG 492


>gi|169218238 PREDICTED: similar to ataxia telangiectasia and Rad3
           related protein, partial [Homo sapiens]
          Length = 2105

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 60  ADFLKAG-CEVTILFADLHAYLDNMKAPWE-LLELRVSYYENVIKAMLESIGVPLEKLKF 117
           +D LKA  C +      L  +L  + A +E  L++R  Y  N+ KA+L+ +G+ ++  ++
Sbjct: 97  SDLLKAALCHL------LQYFLKFVPAGYESALQVRKVYVRNICKALLDVLGIEVD-AEY 149

Query: 118 IKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQA--LDEE 175
           + G  Y   K  ++++       TQ ++  + ++ +   +   LS  L P  +A    EE
Sbjct: 150 LLGPLYAALKMESMEIIEEIQCQTQQENLSSNSDGISP-KRRRLSSSLNPSKRAPKQTEE 208

Query: 176 YLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG 220
              VD     I    +   AE    +L YS    L NP++  L G
Sbjct: 209 IKHVDMNQKSILWSALKQKAESLQISLEYS---GLKNPVIEMLEG 250


>gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens]
          Length = 1256

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 253 GNVENNGVL--SFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLK 310
           G V    VL  S  ++  +P K++F    +E  G  K    +VD        VVHP   +
Sbjct: 186 GKVHGKQVLEPSVSENRTWPQKTDFADTEEEVKGPEKIINEHVD------KTVVHPKVKR 239

Query: 311 NSVEVALNKLLDPIREKFNTPALKKLA 337
           NS+  +L+KLL        +P   KLA
Sbjct: 240 NSLTASLDKLLKEATGTSPSPLQAKLA 266


>gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens]
          Length = 1272

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 253 GNVENNGVL--SFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLK 310
           G V    VL  S  ++  +P K++F    +E  G  K    +VD        VVHP   +
Sbjct: 186 GKVHGKQVLEPSVSENRTWPQKTDFADTEEEVKGPEKIINEHVD------KTVVHPKVKR 239

Query: 311 NSVEVALNKLLDPIREKFNTPALKKLA 337
           NS+  +L+KLL        +P   KLA
Sbjct: 240 NSLTASLDKLLKEATGTSPSPLQAKLA 266


>gi|19913414 adaptor-related protein complex 2, alpha 1 subunit
           isoform 1 [Homo sapiens]
          Length = 977

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 256 ENNGVLSFIKHVLFPLKSEFV--ILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSV 313
           +NNGVL   + +   +KSEF   + R   + GNKT   +    ++F+  VVHPGDL+  +
Sbjct: 750 KNNGVLFENQLLQIGVKSEFRQNLGRMYLFYGNKTSVQF----QNFSPTVVHPGDLQTQL 805

Query: 314 EVALNKL 320
            V   ++
Sbjct: 806 AVQTKRV 812


>gi|19913416 adaptor-related protein complex 2, alpha 1 subunit
           isoform 2 [Homo sapiens]
          Length = 955

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 256 ENNGVLSFIKHVLFPLKSEFV--ILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSV 313
           +NNGVL   + +   +KSEF   + R   + GNKT   +    ++F+  VVHPGDL+  +
Sbjct: 728 KNNGVLFENQLLQIGVKSEFRQNLGRMYLFYGNKTSVQF----QNFSPTVVHPGDLQTQL 783

Query: 314 EVALNKL 320
            V   ++
Sbjct: 784 AVQTKRV 790


>gi|21361176 aldehyde dehydrogenase 1A1 [Homo sapiens]
          Length = 501

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 205 SKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFI 264
           +K+  L NP+ PG+T       E+  KI  LD  E  KK+  K  C  G   N G   F+
Sbjct: 327 AKKYILGNPLTPGVTQGPQIDKEQYDKI--LDLIESGKKEGAKLECGGGPWGNKGY--FV 382

Query: 265 KHVLFP-LKSEFVILRDEKWG 284
           +  +F  +  E  I ++E +G
Sbjct: 383 QPTVFSNVTDEMRIAKEEIFG 403


>gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]
          Length = 1292

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 343 DPSKQKPMAKGPAKN-SEPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRT 401
           D S + P  KG +K  SE E   P             E+ PD  +  VE  D G  EP  
Sbjct: 409 DHSMEDPDKKGESKTKSEAESASP-------------EETPDGSASPVEMQDEGAEEPHE 455

Query: 402 VVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGS 461
               L  F+ KE   DRL     +   +     +    +  ++    + Q       +GS
Sbjct: 456 AGEQLPPFLLKEGRDDRLHSAEQDADDEAADDTDDTSSVTSSASSTTSSQ-------SGS 508

Query: 462 APGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISC 519
                  +    K    +  + K K+    +   +++ E +      + M + GS+ C
Sbjct: 509 GTSRKKSIPLSIKNLKRKHKRKKNKITRDFKPGDRVAVEVVTTMTSADVMWQDGSVEC 566


>gi|144953876 signal-regulatory protein beta 1 isoform 1 precursor
          [Homo sapiens]
          Length = 398

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  PSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLK 64
          PSP   + L+   L  V GE++L+ I  E+ + +  G + T +  +   +P+  I  F  
Sbjct: 11 PSPFLLMTLLLGRLTGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRG 70

Query: 65 AGCEVTILFADLHAYLDNMKAPWEL 89
          AG    +++     +   +    EL
Sbjct: 71 AGAGRELIYNQKEGHFPRVTTVSEL 95


>gi|144953878 signal-regulatory protein beta 1 isoform 2 precursor
          [Homo sapiens]
          Length = 181

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/85 (23%), Positives = 38/85 (44%)

Query: 5  PSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLK 64
          PSP   + L+   L  V GE++L+ I  E+ + +  G + T +  +   +P+  I  F  
Sbjct: 11 PSPFLLMTLLLGRLTGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRG 70

Query: 65 AGCEVTILFADLHAYLDNMKAPWEL 89
          AG    +++     +   +    EL
Sbjct: 71 AGAGRELIYNQKEGHFPRVTTVSEL 95


>gi|209529703 signal-regulatory protein beta 1 isoform 3 precursor
          [Homo sapiens]
          Length = 398

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 5  PSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLK 64
          PSP   + L+   L  V GEE+L+ I  ++ + +  G + T    V   +P+  I  F  
Sbjct: 11 PSPFLLMTLLLGRLTGVAGEEELQVIQPDKSISVAAGESATLHCTVTSLIPVGPIQWFRG 70

Query: 65 AG 66
          AG
Sbjct: 71 AG 72


>gi|7661990 mastermind-like 1 [Homo sapiens]
          Length = 1016

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 343 DPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTV 402
           +PS+  P++       EP E +P  +   VG I      PD        +++ E E + +
Sbjct: 203 NPSESFPLSLNKELKQEPVEDLPCMITGTVGSISQSNLMPD--------LNLNEQEWKEL 254

Query: 403 VSGLVQFVPKEELQD 417
           +  L + VP E+++D
Sbjct: 255 IEELNRSVPDEDMKD 269


>gi|239755097 PREDICTED: hypothetical protein XP_002346214 [Homo
           sapiens]
          Length = 207

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 421 VVLCNLKPQKMR-GVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDE 479
           V +C++ P +   G E+Q +LLCA +   +R V P  P   ++P         EKG+ D 
Sbjct: 22  VSVCDVVPTRQGCGAEAQSLLLCAGVGLPDRCVFPTAPTLANSP---------EKGKFDV 72

Query: 480 ELKPKKKV 487
              P+  V
Sbjct: 73  THPPRMAV 80


>gi|239749610 PREDICTED: hypothetical protein XP_002347102 [Homo
           sapiens]
          Length = 207

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 421 VVLCNLKPQKMR-GVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDE 479
           V +C++ P +   G E+Q +LLCA +   +R V P  P   ++P         EKG+ D 
Sbjct: 22  VSVCDVVPTRQGCGAEAQSLLLCAGVGLPDRCVFPTAPTLANSP---------EKGKFDV 72

Query: 480 ELKPKKKV 487
              P+  V
Sbjct: 73  THPPRMAV 80


>gi|87299628 biorientation of chromosomes in cell division 1-like
            [Homo sapiens]
          Length = 3051

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 433  GVESQGMLLCASIEG---INRQVEPLDPPAGSA-----PGEHVFVKGYEKGQPDEEL 481
            G ES+G+L+C S EG   I   VE ++  AG+A           + G EKG  D ++
Sbjct: 1890 GEESEGVLICESAEGDSQIGTVVEHVEAEAGAAIMNANENNVDSMSGTEKGSKDTDI 1946


>gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [Homo
           sapiens]
          Length = 464

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 127 KEYTLDVYRLSSVVTQHDSKKAGAE---VVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 183
           K Y + V +   V+ + + K   AE   ++K V+HP L GL Y   Q  ++ Y  +D   
Sbjct: 186 KFYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHY-SFQTTEKLYFVLDFVN 244

Query: 184 GG-----------IDQRKIFTFAEKYLPALGYSKRVHLM 211
           GG             + +   +A +   ALGY   + ++
Sbjct: 245 GGELFFHLQRERSFPEHRARFYAAEIASALGYLHSIKIV 283


>gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
           sapiens]
          Length = 496

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 127 KEYTLDVYRLSSVVTQHDSKKAGAE---VVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 183
           K Y + V +   V+ + + K   AE   ++K V+HP L GL Y   Q  ++ Y  +D   
Sbjct: 186 KFYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHY-SFQTTEKLYFVLDFVN 244

Query: 184 GG-----------IDQRKIFTFAEKYLPALGYSKRVHLM 211
           GG             + +   +A +   ALGY   + ++
Sbjct: 245 GGELFFHLQRERSFPEHRARFYAAEIASALGYLHSIKIV 283


>gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
           sapiens]
          Length = 496

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 127 KEYTLDVYRLSSVVTQHDSKKAGAE---VVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 183
           K Y + V +   V+ + + K   AE   ++K V+HP L GL Y   Q  ++ Y  +D   
Sbjct: 186 KFYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHY-SFQTTEKLYFVLDFVN 244

Query: 184 GG-----------IDQRKIFTFAEKYLPALGYSKRVHLM 211
           GG             + +   +A +   ALGY   + ++
Sbjct: 245 GGELFFHLQRERSFPEHRARFYAAEIASALGYLHSIKIV 283


>gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 963

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 25/133 (18%)

Query: 354 PAKNSEPEEVIPSRLDIRVGKIITVEKHPDADS-----------------LYVEKIDVGE 396
           P   S P E++P     R G ++T     DADS                 L+    ++GE
Sbjct: 560 PRNGSVPVEIVPR--SARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISANIGE 617

Query: 397 AEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLD 456
                +V      +P + ++ R+VVV+ +     +    + G+LL  S+  +    E + 
Sbjct: 618 LRTARLV------LPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVW 671

Query: 457 PPAGSAPGEHVFV 469
            P G    +++++
Sbjct: 672 EPGGQLSAQNLYL 684


>gi|14717403 protocadherin alpha subfamily C, 1 isoform 2 precursor
           [Homo sapiens]
          Length = 818

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 25/133 (18%)

Query: 354 PAKNSEPEEVIPSRLDIRVGKIITVEKHPDADS-----------------LYVEKIDVGE 396
           P   S P E++P     R G ++T     DADS                 L+    ++GE
Sbjct: 560 PRNGSVPVEIVPR--SARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISANIGE 617

Query: 397 AEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLD 456
                +V      +P + ++ R+VVV+ +     +    + G+LL  S+  +    E + 
Sbjct: 618 LRTARLV------LPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVW 671

Query: 457 PPAGSAPGEHVFV 469
            P G    +++++
Sbjct: 672 EPGGQLSAQNLYL 684


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,880,675
Number of Sequences: 37866
Number of extensions: 966166
Number of successful extensions: 2339
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2313
Number of HSP's gapped (non-prelim): 49
length of query: 528
length of database: 18,247,518
effective HSP length: 107
effective length of query: 421
effective length of database: 14,195,856
effective search space: 5976455376
effective search space used: 5976455376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press