Guide to the Human Genome
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Name: AIMP1 Sequence: fasta or formatted (312aa) NCBI GI: 45006986
Description:

small inducible cytokine subfamily E, member 1 isoform a precursor

Referenced in:

tRNA Enzymes

Other entries for this name:
alt mRNA [312aa] small inducible cytokine subfamily E, member 1 isoform a precursor
alt prot [336aa] small inducible cytokine subfamily E, member 1 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         23           1
 C cysteine            1.6          5           1
 D aspartate           4.5         14           1
 E glutamate           9.6         30           2
 F phenylalanine       1.3          4           1
 G glycine             6.4         20           2
 H histidine           1.3          4           1
 I isoleucine          7.4         23           2
 K lysine             11.9         37           3
 L leucine             7.7         24           2
 M methionine          2.6          8           1
 N asparagine          4.2         13           2
 P proline             5.4         17           2
 Q glutamine           6.1         19           2
 R arginine            3.5         11           1
 S serine              6.1         19           2
 T threonine           4.2         13           2
 V valine              7.7         24           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine subfamily E, member 1 isofo... 
AIMP1                 1.000   small inducible cytokine subfamily E, member 1 isof...
AIMP1                 1.000   small inducible cytokine subfamily E, member 1 isof...
YARS                  0.247   tyrosyl-tRNA synthetase 
CLIP2                 0.026   CAP-GLY domain containing linker protein 2 isoform ...
CLIP2                 0.026   CAP-GLY domain containing linker protein 2 isoform 2...
INCENP                0.026   inner centromere protein antigens 135/155kDa isofor...
USP8                  0.026   ubiquitin specific peptidase 8 
USP8                  0.026   ubiquitin specific peptidase 8 
USP8                  0.026   ubiquitin specific peptidase 8 
MIA3                  0.024   melanoma inhibitory activity family, member 3 [Homo...
DDX46                 0.024   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
EIF5B                 0.024   eukaryotic translation initiation factor 5B 
CCDC88A               0.022   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.022   coiled-coil domain containing 88A isoform 1 
GOLGA4                0.022   golgi autoantigen, golgin subfamily a, 4 
CGN                   0.022   cingulin 
DTNB                  0.022   dystrobrevin, beta isoform 3 
DTNB                  0.022   dystrobrevin, beta isoform 2 
CEP290                0.020   centrosomal protein 290kDa 
MYH2                  0.020   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.020   myosin, heavy chain 2, skeletal muscle, adult [Homo...
CENPE                 0.020   centromere protein E 
WNK1                  0.020   WNK lysine deficient protein kinase 1 
CROCC                 0.020   ciliary rootlet coiled-coil 
AP3D1                 0.019   adaptor-related protein complex 3, delta 1 subunit ...
NDEL1                 0.019   nudE nuclear distribution gene E homolog (A. nidulan...
NDEL1                 0.019   nudE nuclear distribution gene E homolog (A. nidulan...
ERC2                  0.019   cytomatrix protein p110 
NIN                   0.019   ninein isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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