PCDHAC1 4292

Name: PCDHAC1	Sequence: fasta or formatted (963aa)		NCBI GI: 14717401
Description: protocadherin alpha subfamily C, 1 isoform 1 precursor		Referenced in: Cadherins and Related Proteins
Other entries for this name: alt prot [818aa] protocadherin alpha subfamily C, 1 isoform 2 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.7 74 3 C cysteine 1.6 15 2 D aspartate 6.3 61 3 E glutamate 5.9 57 2 F phenylalanine 3.5 34 2 G glycine 7.7 74 2 H histidine 1.9 18 1 I isoleucine 3.7 36 2 K lysine 3.3 32 8 L leucine 10.5 101 3 M methionine 0.8 8 1 N asparagine 4.9 47 2 P proline 7.0 67 2 Q glutamine 3.7 36 2 R arginine 5.5 53 2 S serine 9.7 93 3 T threonine 5.2 50 2 V valine 8.3 80 5 W tryptophan 0.6 6 1 Y tyrosine 2.2 21 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin alpha subfamily C, 1 isoform 1 precurs... PCDHAC1 0.834 protocadherin alpha subfamily C, 1 isoform 2 precurs... PCDHAC2 0.456 protocadherin alpha subfamily C, 2 isoform 1 precurso... PCDHA8 0.418 protocadherin alpha 8 isoform 1 precursor PCDHGA10 0.315 protocadherin gamma subfamily A, 10 isoform 1 precur... PCDHGA11 0.312 protocadherin gamma subfamily A, 11 isoform 1 precur... PCDHGA12 0.308 protocadherin gamma subfamily A, 12 isoform 1 precurs... PCDHGA3 0.306 protocadherin gamma subfamily A, 3 isoform 1 precurs... PCDHGA4 0.304 protocadherin gamma subfamily A, 4 isoform 1 precurs... PCDHGA9 0.303 protocadherin gamma subfamily A, 9 isoform 1 precurs... PCDHGA8 0.302 protocadherin gamma subfamily A, 8 isoform 1 precurs... PCDHGA5 0.301 protocadherin gamma subfamily A, 5 isoform 1 precurs... PCDHGA10 0.301 protocadherin gamma subfamily A, 10 isoform 2 precur... PCDHGA11 0.301 protocadherin gamma subfamily A, 11 isoform 2 precur... PCDHGC4 0.298 protocadherin gamma subfamily C, 4 isoform 1 precurs... PCDHGA6 0.298 protocadherin gamma subfamily A, 6 isoform 1 precurs... PCDHGA7 0.297 protocadherin gamma subfamily A, 7 isoform 1 precurs... PCDHAC2 0.297 protocadherin alpha subfamily C, 2 isoform 2 precurs... PCDHGA12 0.294 protocadherin gamma subfamily A, 12 isoform 2 precur... PCDHGB7 0.294 protocadherin gamma subfamily B, 7 isoform 1 precurs... PCDHGA2 0.293 protocadherin gamma subfamily A, 2 isoform 1 precurs... PCDHGB1 0.293 protocadherin gamma subfamily B, 1 isoform 1 precurs... PCDHGC5 0.293 protocadherin gamma subfamily C, 5 isoform 1 precurs... PCDHGC4 0.292 protocadherin gamma subfamily C, 4 isoform 2 precurs... PCDHGA1 0.291 protocadherin gamma subfamily A, 1 isoform 1 precurs... PCDHGA3 0.290 protocadherin gamma subfamily A, 3 isoform 2 precurs... PCDHGA4 0.290 protocadherin gamma subfamily A, 4 isoform 2 precurs... PCDHGA8 0.289 protocadherin gamma subfamily A, 8 isoform 2 precurso... PCDHGA9 0.288 protocadherin gamma subfamily A, 9 isoform 2 precurs... PCDHGA5 0.288 protocadherin gamma subfamily A, 5 isoform 2 precurs... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.