Search of human proteins with 4507715

Search of human proteins with 4507715

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507715 thyroid transcription factor 1 isoform 2 [Homo
sapiens]
         (371 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi...   758   0.0  
gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]    758   0.0  
gi|157426823 NK2 homeobox 4 [Homo sapiens]                            357   1e-98
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap...   144   2e-34
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]   137   2e-32
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap...   134   1e-31
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]   130   2e-30
gi|31377777 NK2 homeobox 8 [Homo sapiens]                             127   2e-29
gi|4502365 NK3 homeobox 2 [Homo sapiens]                               91   1e-18
gi|19923352 NK3 homeobox 1 [Homo sapiens]                              86   4e-17
gi|89257348 homeo box HB9 [Homo sapiens]                               84   3e-16
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     78   1e-14
gi|11386181 H2.0-like homeobox [Homo sapiens]                          77   2e-14
gi|63054872 ladybird homeobox 1 [Homo sapiens]                         77   2e-14
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]                   77   2e-14
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             75   9e-14
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  75   9e-14
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  75   9e-14
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  75   9e-14
gi|116805350 homeo box (H6 family) 1 [Homo sapiens]                    75   9e-14
gi|157743259 H6 family homeobox 3 [Homo sapiens]                       75   1e-13
gi|84570137 homeobox B3 [Homo sapiens]                                 74   2e-13
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  74   2e-13
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  74   2e-13
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]                74   2e-13
gi|147901462 brain specific homeobox [Homo sapiens]                    73   5e-13
gi|70608170 H6 family homeobox 2 [Homo sapiens]                        72   1e-12
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]           71   2e-12
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]            71   2e-12
gi|19923391 homeobox D3 [Homo sapiens]                                 70   2e-12

>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
           sapiens]
          Length = 401

 Score =  758 bits (1956), Expect = 0.0
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH 60
           MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH
Sbjct: 31  MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH 90

Query: 61  HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP 120
           HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP
Sbjct: 91  HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP 150

Query: 121 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF 180
           RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF
Sbjct: 151 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF 210

Query: 181 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG 240
           KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG
Sbjct: 211 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG 270

Query: 241 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA 300
           GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA
Sbjct: 271 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA 330

Query: 301 AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM 360
           AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM
Sbjct: 331 AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM 390

Query: 361 SCSTLLYGRTW 371
           SCSTLLYGRTW
Sbjct: 391 SCSTLLYGRTW 401


>gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]
          Length = 371

 Score =  758 bits (1956), Expect = 0.0
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH 60
           MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH
Sbjct: 1   MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH 60

Query: 61  HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP 120
           HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP
Sbjct: 61  HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP 120

Query: 121 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF 180
           RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF
Sbjct: 121 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF 180

Query: 181 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG 240
           KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG
Sbjct: 181 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG 240

Query: 241 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA 300
           GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA
Sbjct: 241 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAAQAA 300

Query: 301 AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM 360
           AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM
Sbjct: 301 AAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDYGTM 360

Query: 361 SCSTLLYGRTW 371
           SCSTLLYGRTW
Sbjct: 361 SCSTLLYGRTW 371


>gi|157426823 NK2 homeobox 4 [Homo sapiens]
          Length = 354

 Score =  357 bits (916), Expect = 1e-98
 Identities = 217/404 (53%), Positives = 249/404 (61%), Gaps = 83/404 (20%)

Query: 1   MSMSPKHTTPFSVSDILSPLEESYKKVG--MEGG--GLGAPLAAYRQGQAAPP------- 49
           MS+SPKHTTPFSVSDILSP+EE+YKK    M+G   GLGAPL A    +A PP       
Sbjct: 1   MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAA 60

Query: 50  -TAAMQ-QHAVGHHGAVTAA------------YHMTAAGVPQLSHSAVGGYCNGNLGNMS 95
             A MQ  HA+  H A  AA            YHM   GV Q  H A+G YCNG LGNM 
Sbjct: 61  TVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPP-GVSQFPHGAMGSYCNGGLGNMG 119

Query: 96  ELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAP 155
           ELP Y D MR  A+  GWYGANPDPR+ +ISRFMGP++G+N++GMG L  + D +K++ P
Sbjct: 120 ELPAYTDGMRGGAA-TGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGP 178

Query: 156 L-----PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ 210
           L      +APRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ
Sbjct: 179 LHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ 238

Query: 211 NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC 270
           NHRYKMKRQAKDKAA QQLQQ+       GG G P        SPRRVAVPVLVKDGKPC
Sbjct: 239 NHRYKMKRQAKDKAA-QQLQQE-------GGLGPP---PPPPPSPRRVAVPVLVKDGKPC 287

Query: 271 QAGA--PAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSP 328
           Q GA  P PG A                                     G QP +   +P
Sbjct: 288 QNGASTPTPGQA-------------------------------------GPQPPAPTPAP 310

Query: 329 DLAHHAASPAALQGQVSSLSHLNSSGSDY-GTMSCSTLLYGRTW 371
           +L   + SP AL G    L+ L+++  +Y G +  + LLYGRTW
Sbjct: 311 ELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW 354


>gi|148746211 NK2 transcription factor related, locus 3 [Homo
           sapiens]
          Length = 364

 Score =  144 bits (362), Expect = 2e-34
 Identities = 130/368 (35%), Positives = 164/368 (44%), Gaps = 46/368 (12%)

Query: 1   MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGH 60
           M  SP  +TPFSV DIL+ LE+ ++     G  L A L  +    +AP   A  +     
Sbjct: 2   MLPSPVTSTPFSVKDILN-LEQQHQH--FHGAHLQADLEHHFH--SAPCMLAAAEGTQFS 56

Query: 61  HGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDP 120
            G                S +A  G+ +  L     +      +R+S S P  +   P+ 
Sbjct: 57  DGGEEDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYV---HTVLRDSCSEPKEHEEEPE- 112

Query: 121 RFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRF 180
               + R     S      +   G      ++  P P + RRK RVLFSQAQV+ELERRF
Sbjct: 113 ----VVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRS-RRKPRVLFSQAQVFELERRF 167

Query: 181 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGG 240
           KQQ+YLSAPEREHLAS + LT TQVKIWFQN RYK KRQ +DK+ +              
Sbjct: 168 KQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLE-------------- 213

Query: 241 GTGCPQQQQAQQQSPRRVAVPVLVKDGKPC------------QAGAPAPGAASLQGHAQQ 288
                    A    PRRVAVPVLV+DGKPC              GA A    S   +   
Sbjct: 214 -----LGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYG 268

Query: 289 QAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQS-PDLAHHAASPAALQGQVSSL 347
            +   A AA AAAAA +  S   G     G   G  G S    A   A  AA  G   ++
Sbjct: 269 NSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNV 328

Query: 348 SHLNSSGS 355
           S+L   GS
Sbjct: 329 SNLGGFGS 336


>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
          Length = 273

 Score =  137 bits (344), Expect = 2e-32
 Identities = 81/150 (54%), Positives = 95/150 (63%), Gaps = 29/150 (19%)

Query: 161 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 220
           +RKRRVLFS+AQ YELERRF+QQ+YLSAPEREHLAS+I LTPTQVKIWFQNHRYKMKR  
Sbjct: 128 KRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRAR 187

Query: 221 KDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQA-GAPAPGA 279
            +K  +               T  P        SPRRVAVPVLV+DGKPC A  A    A
Sbjct: 188 AEKGMEV--------------TPLP--------SPRRVAVPVLVRDGKPCHALKAQDLAA 225

Query: 280 ASLQ------GHAQQQAQHQAQAAQAAAAA 303
           A+ Q       ++ Q  QH    AQ ++A+
Sbjct: 226 ATFQAGIPFSAYSAQSLQHMQYNAQYSSAS 255


>gi|210147470 NK2 transcription factor related, locus 6 [Homo
           sapiens]
          Length = 219

 Score =  134 bits (337), Expect = 1e-31
 Identities = 101/236 (42%), Positives = 115/236 (48%), Gaps = 40/236 (16%)

Query: 118 PDPRFPAISRFMGPASGMNMSGMGGLGSLGD-VSKNMAPLPSA-PRRKRRVLFSQAQVYE 175
           P P   A S    P  G       G+G+ GD V    +  P A  RRK RVLFSQAQV  
Sbjct: 9   PQPGLNAAS----PLGGGTRVPERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLA 64

Query: 176 LERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGG 235
           LERRFKQQ+YLSAPEREHLAS + LT TQVKIWFQN RYK KRQ +DK+ +         
Sbjct: 65  LERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLEL-------- 116

Query: 236 GGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQ 295
                  G P        +PRRVAVPVLV+DGKPC    P PGA +            + 
Sbjct: 117 ------AGHP-------LTPRRVAVPVLVRDGKPCL--GPGPGAPAFPSPYSAAVSPYSC 161

Query: 296 AAQAAAAAISVGSGGAGLGAHPGHQP---------GSAGQSPDLAHHAASPAALQG 342
               + A    G G    GA  G  P         G  GQ+     H A  A LQG
Sbjct: 162 YGGYSGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHGGQNATPQGHLA--ATLQG 215


>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
          Length = 324

 Score =  130 bits (326), Expect = 2e-30
 Identities = 126/377 (33%), Positives = 165/377 (43%), Gaps = 59/377 (15%)

Query: 1   MSMSPKHT-TPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVG 59
           M  SP  T TPFSV DIL+ LE+  + +   G      L+A  +   AP +  +      
Sbjct: 1   MFPSPALTPTPFSVKDILN-LEQQQRSLAAAG-----ELSARLEATLAPSSCMLAAFKPE 54

Query: 60  HHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYG---A 116
            +    AA    A G+P+L               +   P          + P +Y    +
Sbjct: 55  AYAGPEAA----APGLPELR------------AELGRAPSPAKCASAFPAAPAFYPRAYS 98

Query: 117 NPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKR-RVLFSQAQVYE 175
           +PDP           A    +  +     L     + A  P A RR++ RVLFSQAQVYE
Sbjct: 99  DPDPAKDP------RAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYE 152

Query: 176 LERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGG 235
           LERRFKQQ+YLSAPER+ LAS++ LT TQVKIWFQN RYK KRQ +D+  +         
Sbjct: 153 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLEL-------- 204

Query: 236 GGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQ 295
                  G P          RR+AVPVLV+DGKPC  G  AP A +  G       + A 
Sbjct: 205 ------VGLP---PPPPPPARRIAVPVLVRDGKPC-LGDSAPYAPA-YGVGLNPYGYNAY 253

Query: 296 AAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSP-DLAHHAASPAALQGQVSSLSHLNSSG 354
            A       +   G +   A+P      AG SP   A  AA+   +   V  L+ + S G
Sbjct: 254 PAYPGYGGAACSPGYSCTAAYP------AGPSPAQPATAAANNNFVNFGVGDLNAVQSPG 307

Query: 355 SDYGTMSCSTLLYGRTW 371
                   STL   R W
Sbjct: 308 IPQSNSGVSTLHGIRAW 324


>gi|31377777 NK2 homeobox 8 [Homo sapiens]
          Length = 239

 Score =  127 bits (319), Expect = 2e-29
 Identities = 96/247 (38%), Positives = 117/247 (47%), Gaps = 38/247 (15%)

Query: 99  PYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPS 158
           P QD        P      PDP    +    G     + S +    S  D S+  +  P+
Sbjct: 18  PEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLET--SPPDSSQRPSARPA 75

Query: 159 AP------RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNH 212
           +P      R+KRRVLFS+AQ  ELERRF+QQ+YLSAPERE LAS++ LTPTQVKIWFQNH
Sbjct: 76  SPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNH 135

Query: 213 RYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQA 272
           RYK+KR     AA+                    +  A     RRV VPVLV+DG+PC  
Sbjct: 136 RYKLKRARAPGAAESP------------DLAASAELHAAPGLLRRVVVPVLVRDGQPCGG 183

Query: 273 GAPAP-GAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLA 331
           G     G A+        AQ +  A  AAA           L  +P   PGSA       
Sbjct: 184 GGGGEVGTAA--------AQEKCGAPPAAACP---------LPGYPAFGPGSALGLFPAY 226

Query: 332 HHAASPA 338
            H ASPA
Sbjct: 227 QHLASPA 233


>gi|4502365 NK3 homeobox 2 [Homo sapiens]
          Length = 333

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 47/82 (57%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 139 GMGGLGSLGDVSKNMAPLPSAPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASM 197
           G GG G  G   +   P    PR+KR R  FS AQV+ELERRF  Q+YLS PER  LA+ 
Sbjct: 183 GGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAAS 242

Query: 198 IHLTPTQVKIWFQNHRYKMKRQ 219
           + LT TQVKIWFQN RYK KR+
Sbjct: 243 LKLTETQVKIWFQNRRYKTKRR 264


>gi|19923352 NK3 homeobox 1 [Homo sapiens]
          Length = 234

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 40/63 (63%), Positives = 46/63 (73%)

Query: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
           P  P+++ R  FS  QV ELER+F  QKYLSAPER HLA  + LT TQVKIWFQN RYK 
Sbjct: 120 PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKT 179

Query: 217 KRQ 219
           KR+
Sbjct: 180 KRK 182


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 43/82 (52%), Positives = 56/82 (68%), Gaps = 2/82 (2%)

Query: 162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR--Q 219
           R+ R  F+  Q+ ELE +FK  KYLS P+R  +A+ + LT TQVKIWFQN R K KR  +
Sbjct: 242 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301

Query: 220 AKDKAAQQQLQQDSGGGGGGGG 241
           AK++AAQ+  +Q  GGGG G G
Sbjct: 302 AKEQAAQEAEKQKGGGGGAGKG 323



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 48/142 (33%), Positives = 60/142 (42%), Gaps = 26/142 (18%)

Query: 234 GGGGGGGGTG---------------CPQQQ-QAQQQSPRRVAVPVLVKDGKPCQAGAPAP 277
           GGGGGGG +G                P  + +A+  SP R+         KP   GA   
Sbjct: 43  GGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGG 102

Query: 278 GAASLQGHA-QQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHH--- 333
           G  +  GH       H   AA AAAAA +  +GG  LG HPG   G AG     A +   
Sbjct: 103 GGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHP 162

Query: 334 ------AASPAALQGQVSSLSH 349
                 AA+ AAL GQ  +LS+
Sbjct: 163 VYGYSAAAAAAALAGQHPALSY 184


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 62/190 (32%), Positives = 84/190 (44%), Gaps = 23/190 (12%)

Query: 161 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 220
           +R+ R  F+ AQ+ ELER F +  Y     RE LA  I LT  +V++WFQN R K ++Q 
Sbjct: 98  QRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQE 157

Query: 221 KDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKD------------GK 268
           +  AA     ++   G     +   + ++A+   P     P    +            G 
Sbjct: 158 RAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGG 217

Query: 269 PCQAGAP------APGAASLQGHAQQQAQHQAQAAQAAAAAISVG---SGGAGLGAHPGH 319
           P  AGAP       PG    +G A   A   A AA AAAAA + G   +GG G G  PG 
Sbjct: 218 PSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPG- 276

Query: 320 QPGSAGQSPD 329
            PG     PD
Sbjct: 277 -PGPITSIPD 285


>gi|11386181 H2.0-like homeobox [Homo sapiens]
          Length = 488

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 5/191 (2%)

Query: 156 LPSAPRRKR---RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNH 212
           +P   +RKR   R +FS  Q   LE+RF+ QKY++ P+R+ LA+M+ LT  QVK+WFQN 
Sbjct: 268 MPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNR 327

Query: 213 RYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPC-Q 271
           R K  R +K+  AQ+   +++G    GG      +Q  +  S           D +    
Sbjct: 328 RMKW-RHSKEAQAQKDKDKEAGEKPSGGAPAADGEQDERSPSRSEGEAESESSDSESLDM 386

Query: 272 AGAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLA 331
           A +        +    Q    +A    A   A S GSGG+  G        SA      +
Sbjct: 387 APSDTERTEGSERSLHQTTVIKAPVTGALITASSAGSGGSSGGGGNSFSFSSASSLSSSS 446

Query: 332 HHAASPAALQG 342
             A   ++L G
Sbjct: 447 TSAGCASSLGG 457


>gi|63054872 ladybird homeobox 1 [Homo sapiens]
          Length = 281

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 55/142 (38%), Positives = 70/142 (49%), Gaps = 34/142 (23%)

Query: 161 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 220
           RRK R  F+  Q+YELE+RF  QKYLS  +R+ +A  + LT  QV  WFQN R K+KR  
Sbjct: 125 RRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDL 184

Query: 221 K------------------DKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPV 262
           +                  D  A  +L+Q+S    GGGG GC + +        R   PV
Sbjct: 185 EEMKADVESAKKLGPSGQMDIVALAELEQNSEATAGGGG-GCGRAKS-------RPGSPV 236

Query: 263 LVKDGKPCQAGAP-APGAASLQ 283
           L         GAP APGA +LQ
Sbjct: 237 L-------PPGAPKAPGAGALQ 251


>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
          Length = 284

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 78/238 (32%), Positives = 103/238 (43%), Gaps = 33/238 (13%)

Query: 11  FSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVGHHGAVTAAYHM 70
           F +  ILS  E         GGGLG      R GQ      A      G+HGA       
Sbjct: 19  FGIDQILSGPETP-------GGGLGLG----RGGQGHGENGAFSG---GYHGASGYGPAG 64

Query: 71  TAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRN--SASGPGWYGANPDPRFPAIS-- 126
           + A +P  S    GG           +PP           SG G  G      FP +   
Sbjct: 65  SLAPLPGSSGVGPGGVIRVPAHRPLPVPPPAGGAPAVPGPSGLGGAGGLAGLTFPWMDSG 124

Query: 127 -RFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKR-RVLFSQAQVYELERRFKQQK 184
            RF        +S   G   +G   +N  P    P+RK+ R  FS++QV ELERRF +QK
Sbjct: 125 RRFAKDRLTAALSPFSGTRRIGHPYQNRTP----PKRKKPRTSFSRSQVLELERRFLRQK 180

Query: 185 YLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ-AKDKAAQQ--------QLQQDS 233
           YL++ ER  LA  + +T  QVK WFQN R K +RQ A+++ A++         LQQD+
Sbjct: 181 YLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLLLHLQQDA 238


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 141 GGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHL 200
           G  GS     + + P  + PRR R   F+  Q+  LE +F+  +YLS  ER +LA  + L
Sbjct: 144 GSPGSPRPRRRRLEPNCAKPRRARTA-FTYEQLVALENKFRATRYLSVCERLNLALSLSL 202

Query: 201 TPTQVKIWFQNHRYKMKRQ--AKDKAAQ---QQLQQDSGGGGGGGGTG 243
           T TQVKIWFQN R K K+Q    D AAQ      Q  + GGGGGGG+G
Sbjct: 203 TETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSG 250


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 141 GGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHL 200
           G  GS     + + P  + PRR R   F+  Q+  LE +F+  +YLS  ER +LA  + L
Sbjct: 166 GSPGSPRPRRRRLEPNCAKPRRARTA-FTYEQLVALENKFRATRYLSVCERLNLALSLSL 224

Query: 201 TPTQVKIWFQNHRYKMKRQ--AKDKAAQ---QQLQQDSGGGGGGGGTG 243
           T TQVKIWFQN R K K+Q    D AAQ      Q  + GGGGGGG+G
Sbjct: 225 TETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSG 272


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 141 GGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHL 200
           G  GS     + + P  + PRR R   F+  Q+  LE +F+  +YLS  ER +LA  + L
Sbjct: 166 GSPGSPRPRRRRLEPNCAKPRRARTA-FTYEQLVALENKFRATRYLSVCERLNLALSLSL 224

Query: 201 TPTQVKIWFQNHRYKMKRQ--AKDKAAQ---QQLQQDSGGGGGGGGTG 243
           T TQVKIWFQN R K K+Q    D AAQ      Q  + GGGGGGG+G
Sbjct: 225 TETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSG 272


>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 141 GGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHL 200
           G  GS     + + P  + PRR R   F+  Q+  LE +F+  +YLS  ER +LA  + L
Sbjct: 166 GSPGSPRPRRRRLEPNCAKPRRARTA-FTYEQLVALENKFRATRYLSVCERLNLALSLSL 224

Query: 201 TPTQVKIWFQNHRYKMKRQ--AKDKAAQ---QQLQQDSGGGGGGGGTG 243
           T TQVKIWFQN R K K+Q    D AAQ      Q  + GGGGGGG+G
Sbjct: 225 TETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSG 272


>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
          Length = 348

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 21/200 (10%)

Query: 79  SHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMN-M 137
           +H   GG  + +  +       ++  R   + P   G     R  A     GPA+G    
Sbjct: 120 AHGGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEA 179

Query: 138 SGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASM 197
           S +  + +    ++    +    ++K R +FS++QV++LE  F  ++YLS+ ER  LA+ 
Sbjct: 180 SELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAAS 239

Query: 198 IHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRR 257
           + LT TQVKIWFQN R K KRQ    AA+ +    S  G                 + R 
Sbjct: 240 LQLTETQVKIWFQNRRNKWKRQL---AAELEAASLSPPG-----------------AQRL 279

Query: 258 VAVPVLVKDGKPCQAGAPAP 277
           V VPVL  +  P  A A  P
Sbjct: 280 VRVPVLYHESPPAAAAAGPP 299


>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 34/63 (53%), Positives = 47/63 (74%)

Query: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
           P+  ++K R +FS++QV++LE  F  ++YLS+ ER  LA+ +HLT TQVKIWFQN R K 
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282

Query: 217 KRQ 219
           KRQ
Sbjct: 283 KRQ 285


>gi|84570137 homeobox B3 [Homo sapiens]
          Length = 431

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 66/237 (27%), Positives = 92/237 (38%), Gaps = 16/237 (6%)

Query: 130 GPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAP 189
           G   G   SG  G G  G    + +P  SA  ++ R  ++ AQ+ ELE+ F   +YL  P
Sbjct: 157 GGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRP 216

Query: 190 EREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQ 249
            R  +A++++L+  Q+KIWFQN R K K+  K K     L   SGG    G    P Q  
Sbjct: 217 RRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKG----LASSSGGPSPAGSPPQPMQST 272

Query: 250 AQQQSPRRVAVPVLVKDGKPCQAGA-------PAPGAASLQGHAQQQAQHQAQAAQAAAA 302
           A   +      P       P    A       P+     L+G    Q      A +    
Sbjct: 273 AGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPH 332

Query: 303 AISVGSGGAGLGAHPGH--QPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDY 357
            +    G  G     G     G  G +  L   A    +L G ++ LSH  S   DY
Sbjct: 333 VLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAG--PSLYG-LNHLSHHPSGNLDY 386


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 53/133 (39%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 158 SAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 217
           S   R+ R  F+  Q+  LE +FK  +YLS  ER +LA  + LT TQVKIWFQN R K K
Sbjct: 659 SGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 718

Query: 218 RQAKDKAAQQQLQQDSGGG---GGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGA 274
           +Q  +  A        GGG   G G GTG P        SP     P+    G    AG 
Sbjct: 719 KQ--NPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSP-----PMGAPLGMHGPAGY 771

Query: 275 PAPGAASLQGHAQ 287
           PA G   L   AQ
Sbjct: 772 PAHGPGGLVCAAQ 784


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 53/133 (39%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 158 SAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 217
           S   R+ R  F+  Q+  LE +FK  +YLS  ER +LA  + LT TQVKIWFQN R K K
Sbjct: 94  SGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 153

Query: 218 RQAKDKAAQQQLQQDSGGG---GGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGA 274
           +Q  +  A        GGG   G G GTG P        SP     P+    G    AG 
Sbjct: 154 KQ--NPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSP-----PMGAPLGMHGPAGY 206

Query: 275 PAPGAASLQGHAQ 287
           PA G   L   AQ
Sbjct: 207 PAHGPGGLVCAAQ 219


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 53/133 (39%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 158 SAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 217
           S   R+ R  F+  Q+  LE +FK  +YLS  ER +LA  + LT TQVKIWFQN R K K
Sbjct: 256 SGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 315

Query: 218 RQAKDKAAQQQLQQDSGGG---GGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGA 274
           +Q  +  A        GGG   G G GTG P        SP     P+    G    AG 
Sbjct: 316 KQ--NPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSP-----PMGAPLGMHGPAGY 368

Query: 275 PAPGAASLQGHAQ 287
           PA G   L   AQ
Sbjct: 369 PAHGPGGLVCAAQ 381


>gi|147901462 brain specific homeobox [Homo sapiens]
          Length = 233

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 5/101 (4%)

Query: 161 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 220
           RRK R +FS +Q+  LE+RF+ Q+YLS PER  LA+ + L+ TQVK WFQN R K K+Q 
Sbjct: 110 RRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169

Query: 221 KDKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVP 261
           +     +   +     G     G P+  +A   +  R+++P
Sbjct: 170 R-----KSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLP 205


>gi|70608170 H6 family homeobox 2 [Homo sapiens]
          Length = 273

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 45/114 (39%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 106 NSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRR 165
           +  SGPG     P    P+ S F      +  +G    GS             A ++K R
Sbjct: 95  SGGSGPGGLERTPFLS-PSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAGAAKKKTR 153

Query: 166 VLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 219
            +FS++QVY+LE  F  ++YLS+ ER  LAS + LT TQVK WFQN R K KRQ
Sbjct: 154 TVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQ 207


>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
          Length = 283

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%)

Query: 162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 221
           ++ R  +++AQ+ ELE+ F   KY+S P R  LA M++LT   +KIWFQN R K K++ +
Sbjct: 147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE-E 205

Query: 222 DKAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAP 275
           DK      ++  G   GGGG   P+Q  A       +A+P     G      AP
Sbjct: 206 DK------KRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPGGAVPPAAP 253


>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
          Length = 255

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 70/253 (27%), Positives = 98/253 (38%), Gaps = 29/253 (11%)

Query: 48  PPTAAMQQHAVGHHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNS 107
           PP   M    + H        H      P  ++S+   +    LG      PY +++ + 
Sbjct: 25  PPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRP-LGY-----PYVNSVSSH 78

Query: 108 ASGPGWYGANPDPRFPAI--SRFMGPASGMNMSGM--GGLGSLGDVSKNMAPLPSAPRRK 163
           AS P        P   ++  SR   P +    S +  GG        K +        RK
Sbjct: 79  ASSPYISSVQSYPGSASLAQSRLEDPGADSEKSTVVEGGEVRFNGKGKKI--------RK 130

Query: 164 RRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD- 222
            R ++S  Q+  L RRF+Q +YL+ PER  LA+ + LT TQVKIWFQN R K K+  K  
Sbjct: 131 PRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQG 190

Query: 223 KAAQQQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASL 282
            AA +     +G     G    P        S +          G    AG+  P   S 
Sbjct: 191 GAALEGSALANGRALSAGSPPVPPGWNPNSSSGK----------GSGGNAGSYIPSYTSW 240

Query: 283 QGHAQQQAQHQAQ 295
              A Q+A  Q Q
Sbjct: 241 YPSAHQEAMQQPQ 253


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 68/262 (25%), Positives = 102/262 (38%), Gaps = 18/262 (6%)

Query: 115 GANPDPRFPAISRFMGP---ASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQA 171
           G N       IS+ + P    S  N        + G+  ++ +P P    ++ R  ++ A
Sbjct: 146 GPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSP-PGPASKRVRTAYTSA 204

Query: 172 QVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKA-----AQ 226
           Q+ ELE+ F   +YL  P R  +A++++LT  Q+KIWFQN R K K+  K K      A 
Sbjct: 205 QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPAS 264

Query: 227 QQLQQDSGGGGGGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHA 286
           Q  ++    GG  G      Q             P      +P   G  A   A L    
Sbjct: 265 QSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGL-AAYTAPLSSCL 323

Query: 287 QQQAQHQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSS 346
            QQ ++ A   +    A    +GG    A+    P   G      +   S A   G V +
Sbjct: 324 PQQKRYAAPEFEPHPMA---SNGGGFASANLQGSPVYVG-----GNFVESMAPASGPVFN 375

Query: 347 LSHLNSSGSDYGTMSCSTLLYG 368
           L HL+   S     SC+  + G
Sbjct: 376 LGHLSHPSSASVDYSCAAQIPG 397


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.127    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,917,354
Number of Sequences: 37866
Number of extensions: 920361
Number of successful extensions: 8804
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 318
Number of HSP's that attempted gapping in prelim test: 6082
Number of HSP's gapped (non-prelim): 2320
length of query: 371
length of database: 18,247,518
effective HSP length: 104
effective length of query: 267
effective length of database: 14,309,454
effective search space: 3820624218
effective search space used: 3820624218
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.