SHH 29444

Name: SHH	Sequence: fasta or formatted (462aa)		NCBI GI: 4506939
Description: sonic hedgehog preproprotein		Referenced in: Hedgehog and Related Pathways
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.3 57 2 C cysteine 1.5 7 1 D aspartate 5.6 26 2 E glutamate 5.6 26 2 F phenylalanine 2.8 13 1 G glycine 10.6 49 5 H histidine 3.2 15 2 I isoleucine 2.8 13 2 K lysine 4.3 20 2 L leucine 11.5 53 3 M methionine 1.1 5 1 N asparagine 2.2 10 1 P proline 5.0 23 2 Q glutamine 1.9 9 1 R arginine 7.4 34 2 S serine 7.1 33 2 T threonine 4.5 21 2 V valine 6.1 28 2 W tryptophan 1.3 6 1 Y tyrosine 3.0 14 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sonic hedgehog preproprotein IHH 0.500 Indian hedgehog homolog DHH 0.460 desert hedgehog preproprotein POU3F3 0.013 POU class 3 homeobox 3 EVX2 0.013 even-skipped homeobox 2 SUZ12 0.011 joined to JAZF1 LOC100292058 0.011 PREDICTED: hypothetical protein XP_002344766 LOC100290367 0.011 PREDICTED: hypothetical protein XP_002347417 LOC100288730 0.011 PREDICTED: hypothetical protein XP_002343287 ANO8 0.010 anoctamin 8 ZIC2 0.010 zinc finger protein of the cerebellum 2 KCNQ3 0.010 potassium voltage-gated channel KQT-like protein 3 [H... CCDC85C 0.009 coiled-coil domain containing 85C SOX4 0.009 SRY (sex determining region Y)-box 4 FUSSEL18 0.009 PREDICTED: functional smad suppressing element 18 [... FUSSEL18 0.009 PREDICTED: functional smad suppressing element 18 [... FUSSEL18 0.009 PREDICTED: functional smad suppressing element 18 [... ZNF282 0.009 zinc finger protein 282 RFX1 0.009 regulatory factor X1 LOC645602 0.009 PREDICTED: hypothetical protein LOC645602 0.009 PREDICTED: hypothetical protein LOC645602 0.009 PREDICTED: hypothetical protein KIF26A 0.009 kinesin family member 26A GDF7 0.009 growth differentiation factor 7 preproprotein DACH1 0.008 dachshund homolog 1 isoform b DACH1 0.008 dachshund homolog 1 isoform a DACH1 0.008 dachshund homolog 1 isoform c COL17A1 0.008 alpha 1 type XVII collagen ARID1B 0.008 AT rich interactive domain 1B (SWI1-like) isoform 2 ... MARCH9 0.008 membrane-associated RING-CH protein IX Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.