Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: IHH Sequence: fasta or formatted (411aa) NCBI GI: 119392086
Description:

Indian hedgehog homolog

Referenced in:

Hedgehog and Related Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         45           3
 C cysteine            1.5          6           1
 D aspartate           4.4         18           1
 E glutamate           5.6         23           2
 F phenylalanine       3.9         16           1
 G glycine             8.3         34           2
 H histidine           4.4         18           2
 I isoleucine          1.7          7           2
 K lysine              3.2         13           1
 L leucine            11.4         47           5
 M methionine          1.2          5           1
 N asparagine          1.9          8           1
 P proline             6.8         28           2
 Q glutamine           2.7         11           1
 R arginine            8.3         34           3
 S serine              6.6         27           2
 T threonine           4.4         18           2
 V valine              8.3         34           2
 W tryptophan          1.9          8           1
 Y tyrosine            2.7         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Indian hedgehog homolog 
SHH                   0.554   sonic hedgehog preproprotein 
DHH                   0.523   desert hedgehog preproprotein 
C16orf79              0.012   hypothetical protein LOC283870 
DPYS                  0.011   dihydropyrimidinase 
GABBR2                0.007   G protein-coupled receptor 51 
NBEAL2                0.006   neurobeachin-like 2 
ARHGAP28              0.006   Rho GTPase activating protein 28 isoform a 
CGREF1                0.006   cell growth regulator with EF-hand domain 1 
ARHGAP28              0.006   Rho GTPase activating protein 28 isoform b 
CCDC79                0.005   coiled-coil domain containing 79 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press