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Search of human proteins with 4506783
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506783 Sin3A-associated protein, 30kDa [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506783 Sin3A-associated protein, 30kDa [Homo sapiens] 445 e-125
gi|13375862 SAP30-like isoform 1 [Homo sapiens] 248 3e-66
gi|197099936 SAP30-like isoform 2 [Homo sapiens] 164 7e-41
gi|197099958 SAP30-like isoform 3 [Homo sapiens] 153 1e-37
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 47 1e-05
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 45 4e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 44 8e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 44 8e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 44 8e-05
gi|12707580 paired-like homeobox 2b [Homo sapiens] 43 2e-04
gi|197313672 carnitine deficiency-associated gene expressed in v... 41 7e-04
gi|8923710 carnitine deficiency-associated gene expressed in ven... 41 7e-04
gi|9257222 forkhead box O1 [Homo sapiens] 41 0.001
gi|7706435 headcase [Homo sapiens] 41 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.001
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 40 0.001
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 40 0.001
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 40 0.001
gi|13775236 scratch [Homo sapiens] 40 0.001
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|7661892 REST corepressor 1 [Homo sapiens] 40 0.002
gi|24497554 homeobox A13 [Homo sapiens] 40 0.002
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 40 0.002
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 40 0.002
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 39 0.003
gi|133922582 zinc finger protein 358 [Homo sapiens] 39 0.003
gi|126090909 engrailed homeobox 1 [Homo sapiens] 39 0.003
>gi|4506783 Sin3A-associated protein, 30kDa [Homo sapiens]
Length = 220
Score = 445 bits (1144), Expect = e-125
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MNGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG 60
MNGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG
Sbjct: 1 MNGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG 60
Query: 61 PGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQ 120
PGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQ
Sbjct: 61 PGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQ 120
Query: 121 SVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVE 180
SVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVE
Sbjct: 121 SVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVE 180
Query: 181 IVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH 220
IVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH
Sbjct: 181 IVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH 220
>gi|13375862 SAP30-like isoform 1 [Homo sapiens]
Length = 183
Score = 248 bits (633), Expect = 3e-66
Identities = 123/171 (71%), Positives = 139/171 (81%), Gaps = 4/171 (2%)
Query: 51 SAAGPPGA---AGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSAR 107
S GPP A A PG GQ CCL EDGERC R AGNASFSKR+QKSISQKK+K+++DKS R
Sbjct: 10 SREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKLKLDIDKSVR 69
Query: 108 HLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKL 167
HLYICD+HKN IQSVRN+RKRK S DDGGDSP D D PEVDL+QLQVNTLRRYKRH+KL
Sbjct: 70 HLYICDFHKNFIQSVRNKRKRKTS-DDGGDSPEHDTDIPEVDLFQLQVNTLRRYKRHYKL 128
Query: 168 PTRPGLNKAQLVEIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSG 218
TRPG NKAQL E V HFR+IPVNEK+TL YFIY VK++K++ D K + G
Sbjct: 129 QTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKSEGG 179
>gi|197099936 SAP30-like isoform 2 [Homo sapiens]
Length = 142
Score = 164 bits (414), Expect = 7e-41
Identities = 91/171 (53%), Positives = 105/171 (61%), Gaps = 45/171 (26%)
Query: 51 SAAGPPGA---AGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSAR 107
S GPP A A PG GQ CCL EDGERC R AGNASFSKR+QKSISQKK+K+++DKS
Sbjct: 10 SREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKLKLDIDKS-- 67
Query: 108 HLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKL 167
VDL+QLQVNTLRRYKRH+KL
Sbjct: 68 ----------------------------------------VDLFQLQVNTLRRYKRHYKL 87
Query: 168 PTRPGLNKAQLVEIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSG 218
TRPG NKAQL E V HFR+IPVNEK+TL YFIY VK++K++ D K + G
Sbjct: 88 QTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKSEGG 138
>gi|197099958 SAP30-like isoform 3 [Homo sapiens]
Length = 137
Score = 153 bits (387), Expect = 1e-37
Identities = 87/171 (50%), Positives = 100/171 (58%), Gaps = 50/171 (29%)
Query: 51 SAAGPPGA---AGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSAR 107
S GPP A A PG GQ CCL EDGERC R AGNASFSKR+QKSISQKK+K+++DKS
Sbjct: 10 SREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKLKLDIDKS-- 67
Query: 108 HLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKL 167
LQVNTLRRYKRH+KL
Sbjct: 68 ---------------------------------------------LQVNTLRRYKRHYKL 82
Query: 168 PTRPGLNKAQLVEIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSG 218
TRPG NKAQL E V HFR+IPVNEK+TL YFIY VK++K++ D K + G
Sbjct: 83 QTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKSEGG 133
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 47.4 bits (111), Expect = 1e-05
Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 6 PDEMSRGGDAAAAVAAVVAAAAAAASA---GNGTGAGTGAEVPGAGAVSAAGPPGAAGPG 62
P S AAAA AA AAAAAA SA G G+G+G G G+ S G GA G G
Sbjct: 447 PQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGGAGGGG 506
Query: 63 PGQLCCLREDGERCGRAAGNASFSKRIQK 91
G G G A G++ S +
Sbjct: 507 GG------SSGGGSGTAGGHSGLSSNFNE 529
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 45.4 bits (106), Expect = 4e-05
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 15 AAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGE 74
A A AA + AAAA +A +G GAG GAE G+G SA G G G G G+ G
Sbjct: 136 AEARGAATLPAAAATTTALDGPGAGGGAERGGSGRSSAGGGGGGGGGGGGR-------GS 188
Query: 75 RCGRAAG 81
R GR G
Sbjct: 189 RRGRGGG 195
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 44.3 bits (103), Expect = 8e-05
Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 12 GGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAA---GPGPGQLCC 68
GG A AVAA AAAAAAA+AG G G G G G G +S+ G GPG G
Sbjct: 274 GGAGAGAVAA--AAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAAS 331
Query: 69 LREDGERCGRAAG 81
L + G AAG
Sbjct: 332 LSK--AAAGSAAG 342
Score = 34.7 bits (78), Expect = 0.066
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 31 SAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
S G G G G GA GAGAV+AA AA G G
Sbjct: 262 SGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 30.8 bits (68), Expect = 0.95
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 29 AASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
+ G G GAG G GA A +AA AAG G G
Sbjct: 262 SGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG 297
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 12 GGDAAAAVAAVVAAAAAAASAGNGTGAGT------GAEVPGAGAVSAAGPPGAAGPG 62
GG AA +AA AS G G AG G + PG G + +A A PG
Sbjct: 164 GGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPG 220
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 18 AVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAG--------PPGAAGPGPGQ 65
A AA AA A+AG G G GA+ A AA PG GP G+
Sbjct: 399 AAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGR 454
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 44.3 bits (103), Expect = 8e-05
Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 12 GGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAA---GPGPGQLCC 68
GG A AVAA AAAAAAA+AG G G G G G G +S+ G GPG G
Sbjct: 274 GGAGAGAVAA--AAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAAS 331
Query: 69 LREDGERCGRAAG 81
L + G AAG
Sbjct: 332 LSK--AAAGSAAG 342
Score = 34.7 bits (78), Expect = 0.066
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 31 SAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
S G G G G GA GAGAV+AA AA G G
Sbjct: 262 SGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 30.8 bits (68), Expect = 0.95
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 29 AASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
+ G G GAG G GA A +AA AAG G G
Sbjct: 262 SGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG 297
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 12 GGDAAAAVAAVVAAAAAAASAGNGTGAGT------GAEVPGAGAVSAAGPPGAAGPG 62
GG AA +AA AS G G AG G + PG G + +A A PG
Sbjct: 164 GGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPG 220
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 18 AVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAG--------PPGAAGPGPGQ 65
A AA AA A+AG G G GA+ A AA PG GP G+
Sbjct: 399 AAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGR 454
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 44.3 bits (103), Expect = 8e-05
Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 12 GGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAA---GPGPGQLCC 68
GG A AVAA AAAAAAA+AG G G G G G G +S+ G GPG G
Sbjct: 274 GGAGAGAVAA--AAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAAS 331
Query: 69 LREDGERCGRAAG 81
L + G AAG
Sbjct: 332 LSK--AAAGSAAG 342
Score = 34.7 bits (78), Expect = 0.066
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 31 SAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
S G G G G GA GAGAV+AA AA G G
Sbjct: 262 SGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 30.8 bits (68), Expect = 0.95
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 29 AASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
+ G G GAG G GA A +AA AAG G G
Sbjct: 262 SGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGG 297
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 12 GGDAAAAVAAVVAAAAAAASAGNGTGAGT------GAEVPGAGAVSAAGPPGAAGPG 62
GG AA +AA AS G G AG G + PG G + +A A PG
Sbjct: 164 GGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPG 220
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 18 AVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAG--------PPGAAGPGPGQ 65
A AA AA A+AG G G GA+ A AA PG GP G+
Sbjct: 399 AAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGR 454
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 17/59 (28%)
Query: 8 EMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPG---AAGPGP 63
E +GG AAAA AA AAAAAAA+A AG ++AAG PG A GPGP
Sbjct: 235 EPGKGGAAAAAAAAAAAAAAAAAAA--------------AGGLAAAGGPGQGWAPGPGP 279
Score = 30.8 bits (68), Expect = 0.95
Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 41 GAEVPGAGAVSAAGPPGAAGP-GPG 64
GA G G S AG PGAAGP GPG
Sbjct: 209 GANGGGGGGPSPAGAPGAAGPGGPG 233
Score = 28.1 bits (61), Expect = 6.1
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 5 TPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAA----- 59
TP + GG A AA G G G A A A +AA AA
Sbjct: 205 TPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLA 264
Query: 60 ---GPGPG 64
GPG G
Sbjct: 265 AAGGPGQG 272
>gi|197313672 carnitine deficiency-associated gene expressed in
ventricle 3 isoform a [Homo sapiens]
Length = 213
Score = 41.2 bits (95), Expect = 7e-04
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 7 DEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQL 66
+ +R AA A + ++ AA +AG G GAGT PG G ++A GAAGPG
Sbjct: 23 ERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTR---PGDGGTASA---GAAGPGAATK 76
Query: 67 CCLREDGE 74
+++ E
Sbjct: 77 AVTKDEDE 84
Score = 27.7 bits (60), Expect = 8.0
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 25 AAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNAS 84
AA+AA +AG+ G+ +G GAAG G G + G AAG +
Sbjct: 28 AASAAGAAGSAGGS--------------SGAAGAAGGGAGAGTRPGDGGTASAGAAGPGA 73
Query: 85 FSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSP 139
+K + K + K EL++ DY +Q+++ +++ D++ P
Sbjct: 74 ATKAVTKDEDEWK---ELEQKE-----VDYSGLRVQAMQISSEKEEDDNEKRQDP 120
>gi|8923710 carnitine deficiency-associated gene expressed in
ventricle 3 isoform b [Homo sapiens]
Length = 258
Score = 41.2 bits (95), Expect = 7e-04
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 7 DEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQL 66
+ +R AA A + ++ AA +AG G GAGT PG G ++A GAAGPG
Sbjct: 23 ERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTR---PGDGGTASA---GAAGPGAATK 76
Query: 67 CCLREDGE 74
+++ E
Sbjct: 77 AVTKDEDE 84
Score = 27.7 bits (60), Expect = 8.0
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 25 AAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNAS 84
AA+AA +AG+ G+ +G GAAG G G + G AAG +
Sbjct: 28 AASAAGAAGSAGGS--------------SGAAGAAGGGAGAGTRPGDGGTASAGAAGPGA 73
Query: 85 FSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSP 139
+K + K + K EL++ DY +Q+++ +++ D++ P
Sbjct: 74 ATKAVTKDEDEWK---ELEQKE-----VDYSGLRVQAMQISSEKEEDDNEKRQDP 120
>gi|9257222 forkhead box O1 [Homo sapiens]
Length = 655
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/97 (36%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 15 AAAAVAAVVAAAAAAASAGNGTGAGTGAEV------------PGAGAVSAAGPPGAAGPG 62
A +VAA VAAAAAAA+ G G G E PG + PP AAGP
Sbjct: 86 APGSVAAAVAAAAAAAATGGLCGDFQGPEAGCLHPAPPQPPPPGPLSQHPPVPPAAAGPL 145
Query: 63 PGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVK 99
GQ R+ A GN S++ I K+I K
Sbjct: 146 AGQ---PRKSSSSRRNAWGNLSYADLITKAIESSAEK 179
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 40.8 bits (94), Expect = 0.001
Identities = 22/55 (40%), Positives = 25/55 (45%)
Query: 10 SRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
S G + A+ AA AA A+AG A G AGA A G GA G G G
Sbjct: 18 SSGDEQENGAGALAAAGAAGAAAGGALAAAAGCGAAAAGAPGAGGAAGAGGAGTG 72
Score = 39.3 bits (90), Expect = 0.003
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 9 MSRGGDAAAAVAAVVAAAA---AAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPG 62
++ G A AA +AAAA AAA+ G G GA G GA +AA GAA G
Sbjct: 30 LAAAGAAGAAAGGALAAAAGCGAAAAGAPGAGGAAGAGGAGTGAANAAAAAGAAAAG 86
Score = 29.6 bits (65), Expect = 2.1
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 13 GDAAAAVAAVVAAAAAAASAGN-----GTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLC 67
G A AA A AAAA A AG G G G AGA +AAG P L
Sbjct: 41 GGALAAAAGCGAAAAGAPGAGGAAGAGGAGTGAANAAAAAGA-AAAGDAKNEAPCATPLI 99
Query: 68 C 68
C
Sbjct: 100 C 100
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.4 bits (93), Expect = 0.001
Identities = 25/60 (41%), Positives = 26/60 (43%)
Query: 6 PDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQ 65
P E S G A AA VAA A AG AG A AG GP GPGPG+
Sbjct: 129 PPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGK 188
Score = 31.6 bits (70), Expect = 0.56
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 6 PDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQ 65
P GG A AA A AA A +G PG GA +AA PG P +
Sbjct: 300 PAAAQNGGSAGAAPAPAPAAGGPAGVSGQ----------PGPGAAAAAPAPGVKAESPKR 349
Query: 66 LCCLREDGERCGRAAGNAS 84
+ + A+G AS
Sbjct: 350 VVQAAPPAAQTLAASGPAS 368
Score = 30.8 bits (68), Expect = 0.95
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 26 AAAAASAGNGTGAGTGAEVPGAG-AVSAAGPPGAAGPGP 63
AAAA + GN +G+ A GAG A A G PGAA P
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPP 90
Score = 29.6 bits (65), Expect = 2.1
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 11 RGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGA-GAVSAAGPPGAAGPGPG 64
R + AA A + + S GAG A GA GA P G A PG G
Sbjct: 46 RTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGG 100
Score = 29.6 bits (65), Expect = 2.1
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 12 GGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPG----AAGPGPG 64
G A AA AAA G GA G +G PG AA P PG
Sbjct: 285 GHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPG 341
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 40.4 bits (93), Expect = 0.001
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 6 PDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
PD+ GG AAA+ + AA++ AAS G G AG P SA P +AGP PG
Sbjct: 62 PDD---GGVAAASSGSAQAASSPAASVGTGV-AGGAVSTPAPAPASAPAPGPSAGPPPG 116
Score = 36.6 bits (83), Expect = 0.017
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 10 SRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
+ GG A V AA++ +A A + A G V G GAVS P A+ P PG
Sbjct: 55 AEGGAAGPDDGGVAAASSGSAQAASSPAASVGTGVAG-GAVSTPAPAPASAPAPG 108
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 40.4 bits (93), Expect = 0.001
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 6 PDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
PD+ GG AAA+ + AA++ AAS G G AG P SA P +AGP PG
Sbjct: 62 PDD---GGVAAASSGSAQAASSPAASVGTGV-AGGAVSTPAPAPASAPAPGPSAGPPPG 116
Score = 36.6 bits (83), Expect = 0.017
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 10 SRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPG 64
+ GG A V AA++ +A A + A G V G GAVS P A+ P PG
Sbjct: 55 AEGGAAGPDDGGVAAASSGSAQAASSPAASVGTGVAG-GAVSTPAPAPASAPAPG 108
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 40.4 bits (93), Expect = 0.001
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 19 VAAVVAAAAAAASAGNGTGAGTGAE---VPGAGAVSAAGPPGAAG 60
+AA AAAAAA +AG G G+G G VPGAG + G PG AG
Sbjct: 1 MAAAAAAAAAAGAAG-GRGSGPGRRRHLVPGAGGEAGEGAPGGAG 44
Score = 32.7 bits (73), Expect = 0.25
Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 12/48 (25%)
Query: 21 AVVAAAAAAASAGNGTGAGTGAE---VPGAGAVSAAGPPGAAGPG-PG 64
A AAAAAAA A G G+G G VPGAG G AG G PG
Sbjct: 2 AAAAAAAAAAGAAGGRGSGPGRRRHLVPGAG--------GEAGEGAPG 41
>gi|13775236 scratch [Homo sapiens]
Length = 348
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/132 (31%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 2 NGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTG--------AGTGAEVPGAGAVSAA 53
+G + + S G AAA A AA A G G G G G GAG + A
Sbjct: 121 DGRSRRKASNAGSAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARA 180
Query: 54 GPPGAAGPGPGQLCCLREDGERCGR---AAGNASFSKRIQKSISQK---------KVKIE 101
G PGAAG G C GE CG+ + N S K+ +S+ + KV +
Sbjct: 181 G-PGAAGAGGRHAC-----GE-CGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVS 233
Query: 102 LDKSARHLYICD 113
+ A HL D
Sbjct: 234 MPAMAMHLLTHD 245
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 4 FTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGP 63
F D+ S A A A++ AAAA+ + A GAGTG G G V+ G AG G
Sbjct: 311 FDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGA 370
Query: 64 G 64
G
Sbjct: 371 G 371
Score = 35.8 bits (81), Expect = 0.029
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 15 AAAAVAAVVAAAAAAASAGNGTGAGTGAEV-PGAGAVSAAGPPGAAGP 61
AAAA +V AA+ A + G G G G A V GAGA + AG GA GP
Sbjct: 331 AAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAG-AGAKGP 377
Score = 34.3 bits (77), Expect = 0.086
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 17 AAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGP-PGAAGPGP 63
+A AA ++ AAA+ AG G G G V G G + AG GA GP
Sbjct: 330 SAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 4 FTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGP 63
F D+ S A A A++ AAAA+ + A GAGTG G G V+ G AG G
Sbjct: 311 FDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGA 370
Query: 64 G 64
G
Sbjct: 371 G 371
Score = 35.8 bits (81), Expect = 0.029
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 15 AAAAVAAVVAAAAAAASAGNGTGAGTGAEV-PGAGAVSAAGPPGAAGP 61
AAAA +V AA+ A + G G G G A V GAGA + AG GA GP
Sbjct: 331 AAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAG-AGAKGP 377
Score = 34.3 bits (77), Expect = 0.086
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 17 AAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGP-PGAAGPGP 63
+A AA ++ AAA+ AG G G G V G G + AG GA GP
Sbjct: 330 SAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 4 FTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGP 63
F D+ S A A A++ AAAA+ + A GAGTG G G V+ G AG G
Sbjct: 311 FDDDDDSLQEAAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGA 370
Query: 64 G 64
G
Sbjct: 371 G 371
Score = 35.8 bits (81), Expect = 0.029
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 15 AAAAVAAVVAAAAAAASAGNGTGAGTGAEV-PGAGAVSAAGPPGAAGP 61
AAAA +V AA+ A + G G G G A V GAGA + AG GA GP
Sbjct: 331 AAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAG-AGAKGP 377
Score = 34.3 bits (77), Expect = 0.086
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 17 AAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGP-PGAAGPGP 63
+A AA ++ AAA+ AG G G G V G G + AG GA GP
Sbjct: 330 SAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
>gi|7661892 REST corepressor 1 [Homo sapiens]
Length = 482
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/55 (45%), Positives = 29/55 (52%)
Query: 11 RGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQ 65
R G AA +A AAA+AAASA + A T A A + SAA AA P GQ
Sbjct: 12 RRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQ 66
Score = 31.2 bits (69), Expect = 0.73
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 16 AAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG 60
AAA +A AAA+AAA+ NG A P + S + G++G
Sbjct: 46 AAASSASAAAASAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGSSG 90
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 3 GFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAA 59
G DE+++ + AAA AA AAAAAA + G G A G +V+AA AA
Sbjct: 25 GLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAA 81
Score = 37.4 bits (85), Expect = 0.010
Identities = 24/61 (39%), Positives = 26/61 (42%)
Query: 6 PDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQ 65
P E AAAA AA AAAAAAAS+ G G A A S + GP
Sbjct: 109 PGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAA 168
Query: 66 L 66
L
Sbjct: 169 L 169
Score = 33.9 bits (76), Expect = 0.11
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 17/75 (22%)
Query: 10 SRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCL 69
S G+A + AA AAAAAAA+A A A S++G PG AGP +
Sbjct: 107 SAPGEAPPSAAAAAAAAAAAAAA--------------AAAASSSGGPGPAGPAGAEAA-- 150
Query: 70 REDGERCGRAAGNAS 84
+ C AA ++S
Sbjct: 151 -KQCSPCSAAAQSSS 164
Score = 33.1 bits (74), Expect = 0.19
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 3 GFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGP 61
G P + AAAA AA AAAAA++S G G GAE + +A ++GP
Sbjct: 110 GEAPPSAAAAAAAAAAAAA--AAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGP 166
Score = 29.3 bits (64), Expect = 2.8
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 23/81 (28%)
Query: 6 PDEMSRGGDAAAAVAAVVAAAAAAASAGN-----------------------GTGAGTGA 42
P + GG+ + A AA AAAAAA N A A
Sbjct: 61 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 120
Query: 43 EVPGAGAVSAAGPPGAAGPGP 63
A A +AA + GPGP
Sbjct: 121 AAAAAAAAAAAAASSSGGPGP 141
Score = 28.1 bits (61), Expect = 6.1
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 3 GFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAV--SAAG--PPGA 58
GF + G + AA AAAAAAA+ A PGA + SA G PP A
Sbjct: 57 GFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSA 116
Query: 59 A 59
A
Sbjct: 117 A 117
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 6 PDEMSRGGDAAAAVAAVVAAAAAAASAG------NGTGAGTGAEVPGAGAVSAAGPPGAA 59
P E +R AAA AA + A + +G G+G G+ PG A GPPG
Sbjct: 585 PQERARVAHAAATAAASLRLATGLGTMNYPTILPSGVGSGKGSTSPGPKGKWAGGPPGTG 644
Query: 60 GPGP 63
G GP
Sbjct: 645 GHGP 648
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 6 PDEMSRGGDAAAAVAAVVAAAAAAASAG------NGTGAGTGAEVPGAGAVSAAGPPGAA 59
P E +R AAA AA + A + +G G+G G+ PG A GPPG
Sbjct: 585 PQERARVAHAAATAAASLRLATGLGTMNYPTILPSGVGSGKGSTSPGPKGKWAGGPPGTG 644
Query: 60 GPGP 63
G GP
Sbjct: 645 GHGP 648
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 39.3 bits (90), Expect = 0.003
Identities = 33/80 (41%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 13 GDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLRED 72
G A+ A V AAAA +AG G A E A A AGP AAGP G + C ++
Sbjct: 131 GAASGAPRWVRTWAAAAVAAGPGRSAPQ-REPRAAWAACPAGPSSAAGPERGHVSCAADE 189
Query: 73 --GERCGRAA--GNASFSKR 88
ER G AA G+A S R
Sbjct: 190 PGTERSGAAAARGSAGASSR 209
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 39.3 bits (90), Expect = 0.003
Identities = 33/80 (41%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 13 GDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLRED 72
G A+ A V AAAA +AG G A E A A AGP AAGP G + C ++
Sbjct: 131 GAASGAPRWVRTWAAAAVAAGPGRSAPQ-REPRAAWAACPAGPSSAAGPERGHVSCAADE 189
Query: 73 --GERCGRAA--GNASFSKR 88
ER G AA G+A S R
Sbjct: 190 PGTERSGAAAARGSAGASSR 209
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 39.3 bits (90), Expect = 0.003
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 14 DAAAAVAAVVAAAAAAASAGNGTGAG-TGAEVPGAGAVSAAGPPGAAGPGPG 64
+ AAA AA AAAAAAA+AG G G G + A + G VS GP + G G
Sbjct: 398 EGAAAAAAAAAAAAAAAAAGLGLGPGLSPASMMRPGQVSLLGPDAVSVLGSG 449
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 38.9 bits (89), Expect = 0.003
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 2 NGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG 60
+G P G A AA AAAAAA +A A ++ G G+ AG PGA G
Sbjct: 181 DGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQG 239
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,724,419
Number of Sequences: 37866
Number of extensions: 521924
Number of successful extensions: 8720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 4907
Number of HSP's gapped (non-prelim): 2688
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.