Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SAP30L Sequence: fasta or formatted (137aa) NCBI GI: 197099958
Description:

SAP30-like isoform 3

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [183aa] SAP30-like isoform 1
alt prot [142aa] SAP30-like isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         11           4
 C cysteine            2.2          3           2
 D aspartate           3.6          5           1
 E glutamate           7.3         10           2
 F phenylalanine       3.6          5           1
 G glycine             6.6          9           2
 H histidine           1.5          2           1
 I isoleucine          3.6          5           1
 K lysine             10.2         14           2
 L leucine             7.3         10           1
 M methionine          1.5          2           1
 N asparagine          5.1          7           1
 P proline             5.1          7           2
 Q glutamine           5.8          8           1
 R arginine            8.0         11           2
 S serine              8.8         12           1
 T threonine           3.6          5           1
 V valine              4.4          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SAP30-like isoform 3 
SAP30L                0.976   SAP30-like isoform 2 
SAP30L                0.913   SAP30-like isoform 1 
SAP30                 0.508   Sin3A-associated protein, 30kDa 
ZCCHC2                0.024   zinc finger, CCHC domain containing 2 
MAGI2                 0.020   membrane associated guanylate kinase, WW and PDZ dom...
AHDC1                 0.020   AT hook, DNA binding motif, containing 1 
ProSAPiP1             0.016   ProSAPiP1 protein 
DUOX1                 0.012   dual oxidase 1 precursor 
DUOX1                 0.012   dual oxidase 1 precursor 
DUOX2                 0.012   dual oxidase 2 precursor 
IGSF9B                0.012   immunoglobulin superfamily, member 9B 
ARHGEF17              0.012   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
PLCH2                 0.008   phospholipase C, eta 2 
KLC3                  0.008   kinesin light chain 3 
GPRIN1                0.008   G protein-regulated inducer of neurite outgrowth 1 ...
PRR12                 0.008   proline rich 12 
DMPK                  0.004   myotonic dystrophy protein kinase isoform 1 
DMPK                  0.004   myotonic dystrophy protein kinase isoform 2 
SDCCAG1               0.004   serologically defined colon cancer antigen 1 
METTL5                0.004   methyltransferase like 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press