Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4506269
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506269 parathyroid hormone-like hormone isoform 2
preproprotein [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39995093 parathyroid hormone-like hormone isoform 1 prepropro... 353 6e-98
gi|39995091 parathyroid hormone-like hormone isoform 1 prepropro... 353 6e-98
gi|39995089 parathyroid hormone-like hormone isoform 2 prepropro... 353 6e-98
gi|4506269 parathyroid hormone-like hormone isoform 2 preproprot... 353 6e-98
gi|193804867 nucleolar and spindle associated protein 1 isoform ... 36 0.015
gi|193804865 nucleolar and spindle associated protein 1 isoform ... 36 0.015
gi|17505234 nucleolar and spindle associated protein 1 isoform 2... 36 0.015
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 34 0.074
gi|4506267 parathyroid hormone preproprotein [Homo sapiens] 33 0.13
gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens] 33 0.13
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.16
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.22
gi|4504695 inhibitor of growth family, member 2 [Homo sapiens] 32 0.22
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 32 0.28
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 32 0.37
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo... 32 0.37
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 32 0.37
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform... 31 0.48
gi|145580597 sarcoma antigen 1 [Homo sapiens] 31 0.48
gi|62243696 stromal antigen 1 [Homo sapiens] 31 0.48
gi|221625528 granzyme B precursor [Homo sapiens] 31 0.63
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 31 0.63
gi|21361891 SH2 domain containing 4A [Homo sapiens] 31 0.63
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 31 0.63
gi|112821690 G protein-regulated inducer of neurite outgrowth 3 ... 30 0.82
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 30 0.82
gi|239757916 PREDICTED: SAGE1-like protein-like [Homo sapiens] 30 1.1
gi|239752427 PREDICTED: SAGE1-like protein-like [Homo sapiens] 30 1.1
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239746945 PREDICTED: SAGE1-like protein-like [Homo sapiens] 30 1.1
>gi|39995093 parathyroid hormone-like hormone isoform 1
preproprotein [Homo sapiens]
Length = 177
Score = 353 bits (905), Expect = 6e-98
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 60
MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
Sbjct: 1 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 60
Query: 61 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 120
HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
Sbjct: 61 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 120
Query: 121 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 175
TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR
Sbjct: 121 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 175
>gi|39995091 parathyroid hormone-like hormone isoform 1
preproprotein [Homo sapiens]
Length = 177
Score = 353 bits (905), Expect = 6e-98
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 60
MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
Sbjct: 1 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 60
Query: 61 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 120
HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
Sbjct: 61 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 120
Query: 121 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 175
TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR
Sbjct: 121 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 175
>gi|39995089 parathyroid hormone-like hormone isoform 2
preproprotein [Homo sapiens]
Length = 175
Score = 353 bits (905), Expect = 6e-98
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 60
MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
Sbjct: 1 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 60
Query: 61 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 120
HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
Sbjct: 61 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 120
Query: 121 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 175
TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR
Sbjct: 121 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 175
>gi|4506269 parathyroid hormone-like hormone isoform 2 preproprotein
[Homo sapiens]
Length = 175
Score = 353 bits (905), Expect = 6e-98
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 60
MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL
Sbjct: 1 MQRRLVQQWSVAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFL 60
Query: 61 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 120
HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK
Sbjct: 61 HHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLK 120
Query: 121 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 175
TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR
Sbjct: 121 TPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 175
>gi|193804867 nucleolar and spindle associated protein 1 isoform 3
[Homo sapiens]
Length = 402
Score = 36.2 bits (82), Expect = 0.015
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 95 FGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGV 152
+G E YL Q N++ YK + K P + K + K++EQE+K+++ + + G+
Sbjct: 341 WGQSKENNYLNQHVNRINFYK-KTYKQPHLQTKEEQRKKREQERKEKKAKVLGMRRGL 397
>gi|193804865 nucleolar and spindle associated protein 1 isoform 1
[Homo sapiens]
Length = 441
Score = 36.2 bits (82), Expect = 0.015
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 95 FGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGV 152
+G E YL Q N++ YK + K P + K + K++EQE+K+++ + + G+
Sbjct: 380 WGQSKENNYLNQHVNRINFYK-KTYKQPHLQTKEEQRKKREQERKEKKAKVLGMRRGL 436
>gi|17505234 nucleolar and spindle associated protein 1 isoform 2
[Homo sapiens]
Length = 440
Score = 36.2 bits (82), Expect = 0.015
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 95 FGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGV 152
+G E YL Q N++ YK + K P + K + K++EQE+K+++ + + G+
Sbjct: 379 WGQSKENNYLNQHVNRINFYK-KTYKQPHLQTKEEQRKKREQERKEKKAKVLGMRRGL 435
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 33.9 bits (76), Expect = 0.074
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 104 LTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
L Q K E KE+ K KKKK K K+K+++KKK++ +
Sbjct: 99 LPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKK 139
Score = 31.6 bits (70), Expect = 0.37
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 106 QETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
+E + E K++ K KKKK K K+K+++KKK++ R
Sbjct: 103 EEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKR 141
Score = 31.2 bits (69), Expect = 0.48
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 106 QETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
+E K + K++ K KKKK K K+K+++KKKR+ +
Sbjct: 106 KEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRK 144
Score = 30.4 bits (67), Expect = 0.82
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 60 LHHLIAEIHTAEIRAT----SEVSPNSKPSPNTKN------HPVRFGSDDEGRYLTQETN 109
+H L+++I T + +T S+ S P +T H + D G L +
Sbjct: 38 IHPLLSKIITPCLLSTHSTHSDPSATVLPGSSTHRLKGKIFHLISIAFCDAGPSLHLPLH 97
Query: 110 KVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
+ +E+ K KKKK K K+K+++KKK++ +
Sbjct: 98 GLPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKK 132
Score = 30.4 bits (67), Expect = 0.82
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 99 DEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
+E + +E K + K++ K KKKK K K+K++ K+KR+ +
Sbjct: 103 EEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRK 148
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 92 PVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
P R ++ + ++ K + K++ K KKKK K KRK + K+KR+ +
Sbjct: 100 PQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRK 152
Score = 28.9 bits (63), Expect = 2.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 106 QETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
++ K + K++ K KKKK K KRK + K+KR+ +
Sbjct: 116 KKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKK 154
Score = 28.1 bits (61), Expect = 4.1
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 84 PSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRT 143
PS + H + + + + ++ K + K++ K KKKK K K+K + K+KR+
Sbjct: 90 PSLHLPLHGLPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKR 149
Query: 144 R 144
+
Sbjct: 150 K 150
Score = 27.7 bits (60), Expect = 5.3
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 106 QETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTGS 155
++ K + K++ K KKKK + KRK + K+K++ + +G G+
Sbjct: 118 KKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKKTGNEGA 167
>gi|4506267 parathyroid hormone preproprotein [Homo sapiens]
Length = 115
Score = 33.1 bits (74), Expect = 0.13
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 11 VAVFLLSYAVPSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFLHHLIAEIH 68
+ + + + S G+SV+ KR+VSE QL+H+ GK + + R +L + ++H
Sbjct: 12 IVMLAICFLTKSDGKSVK------KRSVSEIQLMHNLGKHLNSMERVEWLRKKLQDVH 63
>gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]
Length = 822
Score = 33.1 bits (74), Expect = 0.13
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 111 VETYKEQPLKTPGKK-KKGKPGKRKEQEKKKRRTRSA 146
V+ +E+P+K KK KKGK GK+KE++ KK + +A
Sbjct: 455 VDRERERPVKAGKKKDKKGKKGKKKEKKAKKDKDLTA 491
Score = 27.7 bits (60), Expect = 5.3
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 106 QETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWL 148
++ K + KE+ K K+KKG K KE+++K + + S +L
Sbjct: 350 EKNKKKKKKKEKQPKKAKKQKKGTKEKNKEEDEKWKMSPSLFL 392
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.16
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 74 ATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKR 133
++S S +S S ++ + SD EG L + K P TP K+ + G+
Sbjct: 2538 SSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVA--LKRVPSPTPAPKEAVREGRP 2595
Query: 134 KEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTS 169
E KR+ RS+ S + S S +S++S
Sbjct: 2596 PEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSS 2631
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 77 EVSPNSKPSPNTKNHPVRF--GSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKP---- 130
E S + P+P K + G E +E K K+ ++ KK+K +
Sbjct: 176 ESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPK 235
Query: 131 GKRKEQEKKKRRTRS 145
KRK ++KK++R+RS
Sbjct: 236 SKRKSKDKKRKRSRS 250
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 32.3 bits (72), Expect = 0.22
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 73 RATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPG---KKKKGK 129
+ T E + K + E +E + E KE+ K G KKKK +
Sbjct: 44 KKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKR 103
Query: 130 PGKRKEQEKKKRRTR 144
K +E+EKKK+R R
Sbjct: 104 RRKEEEEEKKKKRRR 118
Score = 31.6 bits (70), Expect = 0.37
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 105 TQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKR 141
T+ET + E +E+ GK+K+ + KRKE+EKKK+
Sbjct: 13 TEETEETEEEEEK----EGKRKEKRKEKRKEKEKKKK 45
Score = 30.4 bits (67), Expect = 0.82
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 69 TAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKG 128
T E T E + K + E + T+ET K + +E+ K K+KK
Sbjct: 10 TEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKK 69
Query: 129 KPGKRKEQEKKK 140
K + +E+E+++
Sbjct: 70 KEEEEREEEEEE 81
Score = 30.4 bits (67), Expect = 0.82
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 105 TQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
T+ET + E +E+ K GK+K+ + KRKE+E KK++T+
Sbjct: 10 TEETEETEETEEEEEKE-GKRKEKRKEKRKEKE-KKKKTK 47
>gi|4504695 inhibitor of growth family, member 2 [Homo sapiens]
Length = 280
Score = 32.3 bits (72), Expect = 0.22
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 30 LSRRLKRAVSEHQLLHDKG--------KSIQDLRRRFFLHHLIAEIHTAEIRATSEVSPN 81
L + L+RA+ Q L D+ + +++ R+ LH + RA+ + +
Sbjct: 82 LQQLLQRALINSQELGDEKIQIVTQMLELVENRARQMELHSQCFQDPAESERASDKAKMD 141
Query: 82 SKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKR 141
S + P R + E R L N +E +QP K+KK K K+K++ K K+
Sbjct: 142 SSQPERSSRRPRRQRTS-ESRDLCHMANGIEDCDDQP----PKEKKSKSAKKKKRSKAKQ 196
Query: 142 RTRSA 146
++
Sbjct: 197 EREAS 201
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 32.0 bits (71), Expect = 0.28
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 97 SDDEGRYLTQETNKV--ETYKEQPLKTPGKKKKGKPGKRKEQEKKKRR 142
S EG +E +V + E TPGKKKK K G +KE++ K +R
Sbjct: 85 SSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKR 132
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 31.6 bits (70), Expect = 0.37
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 21 PSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFLHHLIAEIHTAEIRATSEVSP 80
P + ++GLS R R + + H G S + H I +++ A++ A+ +VSP
Sbjct: 346 PQINQRLKGLSDRFGRNLDTFE--HGGGHS--------YNHKQIEQLYAAQL-ASMQVSP 394
Query: 81 NSK-PS----PNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGK 132
+K PS PNT G +E R + T + QPL + K +P K
Sbjct: 395 GAKMPSTPQPPNTAGTVSPTGIKNEKRGTSPVTQVKDEAAAQPLNLSSRPKTAEPVK 451
>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
sapiens]
Length = 808
Score = 31.6 bits (70), Expect = 0.37
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 21 PSCGRSVEGLSRRLKRAVSEHQLLHDKGKSIQDLRRRFFLHHLIAEIHTAEIRATSEVSP 80
P + ++GLS R R + + H G S + H I +++ A++ A+ +VSP
Sbjct: 333 PQINQRLKGLSDRFGRNLDTFE--HGGGHS--------YNHKQIEQLYAAQL-ASMQVSP 381
Query: 81 NSK-PS----PNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGK 132
+K PS PNT G +E R + T + QPL + K +P K
Sbjct: 382 GAKMPSTPQPPNTAGTVSPTGIKNEKRGTSPVTQVKDEAAAQPLNLSSRPKTAEPVK 438
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 31.6 bits (70), Expect = 0.37
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 75 TSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRK 134
T+E S PSP + P+ GS E R +E K E +++ K K+++ + +R+
Sbjct: 697 TAEGLHPSLPSPTGNSTPL--GSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKERE 754
Query: 135 EQEKKKRR 142
+QEK++ +
Sbjct: 755 KQEKEREK 762
>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
[Homo sapiens]
Length = 845
Score = 31.2 bits (69), Expect = 0.48
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 33 RLKRAVSEHQLLHDKGKSIQDLRRRFFL--HHLIAEIHTAEIRATSEVSPNSKPSPNTKN 90
R+ +AVSE Q KGK ++ + + + A + E E+ +P K
Sbjct: 160 RINKAVSEEQQPALKGKKGKEEKSKGKAKPQNKFAALDNEEEDKEEEIIKEKEPPKQGKE 219
Query: 91 HPVRF--GSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSA 146
+ GS++EG +E E+ + P KK+K K K+ E E++ ++A
Sbjct: 220 KAKKAEQGSEEEGEGEEEEEEGGESKADDPYAHLSKKEKKKLKKQMEYERQVASLKAA 277
>gi|145580597 sarcoma antigen 1 [Homo sapiens]
Length = 904
Score = 31.2 bits (69), Expect = 0.48
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 82 SKPSPNTKNHPVRFGSDDEGRYL-TQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKK 140
S+P+P + H + ++G+ + + E N V T + KKK + KR K+
Sbjct: 9 SQPTPPEELHAAAYVFTNDGQQMRSDEVNLVATGHQS------KKKHSRKSKR-HSSSKR 61
Query: 141 RRTRSAWLD 149
R++ S+WLD
Sbjct: 62 RKSMSSWLD 70
>gi|62243696 stromal antigen 1 [Homo sapiens]
Length = 1258
Score = 31.2 bits (69), Expect = 0.48
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 104 LTQETNKVETYKE-----QPLKTPGKKKKGKPGKRKEQEKKKRRT--RSAWLDSGVTGSG 156
L TN+ + + + + GK+K+G+PG+ KK R++ + +++G+ G+G
Sbjct: 9 LQDSTNETTAHSDAGSELEETEVKGKRKRGRPGRPPSTNKKPRKSPGEKSRIEAGIRGAG 68
>gi|221625528 granzyme B precursor [Homo sapiens]
Length = 247
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 71 EIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKP 130
E T + P +P P+ +P F +D L E T QPL+ P K + KP
Sbjct: 81 EQEPTQQFIPVKRPIPHPAYNPKNFSNDI--MLLQLERKAKRTRAVQPLRLPSNKAQVKP 138
Query: 131 GK 132
G+
Sbjct: 139 GQ 140
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 79 SPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEK 138
S ++ PSP++ H +DEG +T+K+ +++P GKK K K+K+
Sbjct: 210 SKSATPSPSSSVH------EDEG----DDTSKINGGEKRPASDMGKKPKTPKKKKKKDPN 259
Query: 139 KKRRTRSAW 147
+ ++ SA+
Sbjct: 260 EPQKPVSAY 268
>gi|21361891 SH2 domain containing 4A [Homo sapiens]
Length = 454
Score = 30.8 bits (68), Expect = 0.63
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 71 EIRATSEVSPNSKPSPNTKNHPVRFGSDDEG---RYLTQETNKVETYKEQPLKTPGKKKK 127
++ E+ S+P+P + +R S + L N+++ Y K KKK+
Sbjct: 148 KVAEKEELEQGSRPAPTLEEEKIRSLSSSSRNIQQMLADSINRMKAYAFHQKKESMKKKQ 207
Query: 128 GKPGKRKEQEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDSR 175
+ + E+E+ K+ +S W + + L +D SL +R
Sbjct: 208 DEEINQIEEERTKQICKS-WKEDSEWQASLRKSKAADEKRRSLAKQAR 254
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 30.8 bits (68), Expect = 0.63
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 82 SKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKK----GK--PGKRKE 135
+KP+P+ H V FG G+ + +E +E K P + + G+ P + +
Sbjct: 128 TKPTPHLDGHHVVFGQVISGQEVVRE---IENQKTDAASKPFAEVRILSCGELIPKSKVK 184
Query: 136 QEKKKRRTRSAWLDSGVTGSGLEGDHLSDTSTTSLELDS 174
+E+KKR S S + S + D SD+ ++S DS
Sbjct: 185 KEEKKRHKSS----SSSSSSSSDSDSSSDSQSSSDSSDS 219
Score = 28.5 bits (62), Expect = 3.1
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 87 NTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSA 146
N+K +R S+ + +Y + + ++ K K K+ + K E+K+ R+RS
Sbjct: 432 NSKERDIRRNSEKDDKYKNKVKKRAKSKSRSKSKEKSKSKE-RDSKHNRNEEKRMRSRSK 490
Query: 147 WLD 149
D
Sbjct: 491 GRD 493
>gi|112821690 G protein-regulated inducer of neurite outgrowth 3
[Homo sapiens]
Length = 776
Score = 30.4 bits (67), Expect = 0.82
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 75 TSEVSPNSKPSPNTKNHPVRFGSDDEGRYLTQETNKVETYKEQPLKTPGKKKKGKPGKRK 134
+S S PS + K P R E +L ++ V Q TPG KKK K
Sbjct: 615 SSPGSGKKTPSRSVKASPRRPSRVSE--FLKEQKLNVTAAAAQVGLTPGDKKKQLGADSK 672
Query: 135 EQEKKKRRTRS-AWLDSGVT----GSGLEGDHL 162
Q K+ +R R W + G+T G+ L+ + L
Sbjct: 673 LQLKQSKRVRDVVWDEQGMTWEVYGASLDAESL 705
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 30.4 bits (67), Expect = 0.82
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 51 IQDLRRRFFLHHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEG 101
+QDLR LH L+A+ V P +P+P + GSD EG
Sbjct: 346 MQDLRLEGALHLLLAQQQLRARARAGSVRPRGQPTPGEMLPSLPVGSDSEG 396
>gi|239757916 PREDICTED: SAGE1-like protein-like [Homo sapiens]
Length = 944
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 63 LIAEIHTAEIRATSEVSP--NSKPSPNTKNHPVRFGSDDEGRYL-TQETNKVETYKEQPL 119
L+ I E + SP S+P+P + H V + ++G+ + E N+V T +
Sbjct: 29 LVTHIVNYEDYLQIQASPLQTSQPTPPEELHTVGYVFTNDGQQTRSDEVNQVATGHQS-- 86
Query: 120 KTPGKKKKGKPGKRKEQEKKKRRTRSAWLD 149
K+K+ + KR K+R++ S WL+
Sbjct: 87 ----KQKRSRESKR-HSSSKRRKSMSRWLN 111
>gi|239752427 PREDICTED: SAGE1-like protein-like [Homo sapiens]
Length = 944
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 63 LIAEIHTAEIRATSEVSP--NSKPSPNTKNHPVRFGSDDEGRYL-TQETNKVETYKEQPL 119
L+ I E + SP S+P+P + H V + ++G+ + E N+V T +
Sbjct: 29 LVTHIVNYEDYLQIQASPLQTSQPTPPEELHTVGYVFTNDGQQTRSDEVNQVATGHQS-- 86
Query: 120 KTPGKKKKGKPGKRKEQEKKKRRTRSAWLD 149
K+K+ + KR K+R++ S WL+
Sbjct: 87 ----KQKRSRESKR-HSSSKRRKSMSRWLN 111
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 105 TQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTRSAWLDSGVTG 154
T T + E KE+ + +K+K K ++K+++KKK++ + L++ V G
Sbjct: 70 TTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCG 119
Score = 28.9 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 105 TQETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
T++T T +++ K K+K+ + K KE+EKKK++ +
Sbjct: 65 TKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKK 104
Score = 27.3 bits (59), Expect = 6.9
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 46 DKGKSIQDLRRRFFLHHLIAEIHTAEIRATSEVSPNSKPSPNTKNHPVRFGSDDEGRYLT 105
DKG +++ + H+I E +A R + + K T + + T
Sbjct: 5 DKGVAMEKV-------HVITEKESAWKRGRKKKTTKKKKKKKTTMKKKK--KTTTKKKTT 55
Query: 106 QETNKVETYKEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 144
+T K T ++ T K+K+ + K KE+EK+K + +
Sbjct: 56 TKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEK 94
>gi|239746945 PREDICTED: SAGE1-like protein-like [Homo sapiens]
Length = 990
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 63 LIAEIHTAEIRATSEVSP--NSKPSPNTKNHPVRFGSDDEGRYL-TQETNKVETYKEQPL 119
L+ I E + SP S+P+P + H V + ++G+ + E N+V T +
Sbjct: 29 LVTHIVNYEDYLQIQASPLQTSQPTPPEELHTVGYVFTNDGQQTRSDEVNQVATGHQS-- 86
Query: 120 KTPGKKKKGKPGKRKEQEKKKRRTRSAWLD 149
K+K+ + KR K+R++ S WL+
Sbjct: 87 ----KQKRSRESKR-HSSSKRRKSMSRWLN 111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,215,646
Number of Sequences: 37866
Number of extensions: 337304
Number of successful extensions: 2561
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 2094
Number of HSP's gapped (non-prelim): 397
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.