Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GZMB Sequence: fasta or formatted (247aa) NCBI GI: 221625528
Description:

granzyme B precursor

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         16           2
 C cysteine            2.8          7           1
 D aspartate           4.0         10           2
 E glutamate           4.0         10           1
 F phenylalanine       2.8          7           1
 G glycine             7.3         18           2
 H histidine           3.6          9           1
 I isoleucine          5.7         14           2
 K lysine              8.5         21           2
 L leucine             8.9         22           4
 M methionine          2.8          7           1
 N asparagine          3.6          9           2
 P proline             7.3         18           2
 Q glutamine           5.3         13           2
 R arginine            5.7         14           1
 S serine              6.1         15           2
 T threonine           4.9         12           1
 V valine              5.7         14           1
 W tryptophan          1.6          4           1
 Y tyrosine            2.8          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   granzyme B precursor 
GZMH                  0.665   granzyme H 
CTSG                  0.547   cathepsin G preproprotein 
CMA1                  0.445   chymase 1, mast cell preproprotein 
GZMA                  0.290   granzyme A precursor 
PRTN3                 0.271   myeloblastin 
KLK14                 0.271   kallikrein 14 preproprotein 
CFD                   0.261   complement factor D preproprotein 
PRSS1                 0.253   protease, serine, 1 preproprotein 
KLK13                 0.253   kallikrein 13 precursor 
KLK11                 0.251   kallikrein 11 isoform 1 preproprotein 
KLK11                 0.251   kallikrein 11 isoform 2 precursor 
KLK11                 0.251   kallikrein 11 isoform 1 preproprotein 
PRSSL1                0.249   protease, serine-like 1 
KLK15                 0.245   kallikrein-related peptidase 15 isoform 4 preproprot...
KLK8                  0.243   kallikrein 8 isoform 2 
KLK8                  0.243   kallikrein 8 isoform 1 preproprotein 
GZMM                  0.243   granzyme M precursor 
GZMK                  0.239   granzyme K precursor 
PRSS3                 0.229   mesotrypsin isoform 2 preproprotein 
PRSS3                 0.224   mesotrypsin isoform 1 preproprotein 
KLK1                  0.218   kallikrein 1 preproprotein 
KLK4                  0.218   kallikrein-related peptidase 4 preproprotein 
PRSS2                 0.216   protease, serine, 2 preproprotein 
KLK6                  0.216   kallikrein-related peptidase 6 isoform A preproprote...
KLK6                  0.216   kallikrein-related peptidase 6 isoform A preproprotei...
KLK2                  0.214   kallikrein 2, prostatic isoform 1 
KLK7                  0.210   stratum corneum chymotryptic enzyme preproprotein [H...
KLK7                  0.210   stratum corneum chymotryptic enzyme preproprotein [Ho...
KLK5                  0.204   kallikrein-related peptidase 5 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press