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Search of human proteins with 4505787
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505787 elafin preproprotein [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505787 elafin preproprotein [Homo sapiens] 243 2e-65
gi|4507065 secretory leukocyte peptidase inhibitor precursor [Ho... 61 2e-10
gi|21717822 WAP four-disulfide core domain 5 precursor [Homo sap... 50 4e-07
gi|20069858 WAP four-disulfide core domain 12 precursor [Homo sa... 47 4e-06
gi|153946389 WAP four-disulfide core domain 8 precursor [Homo sa... 43 5e-05
gi|153946387 WAP four-disulfide core domain 8 precursor [Homo sa... 43 5e-05
gi|32307109 WAP four-disulfide core domain 3 precursor [Homo sap... 43 6e-05
gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens] 40 5e-04
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens] 40 5e-04
gi|56699495 WAP four-disulfide core domain 2 precursor [Homo sap... 39 7e-04
gi|119395746 Kallmann syndrome 1 protein precursor [Homo sapiens] 39 0.001
gi|10732863 serine peptidase inhibitor-like, with Kunitz and WAP... 36 0.007
gi|31563528 serine peptidase inhibitor-like, with Kunitz and WAP... 35 0.013
gi|18379353 WAP four-disulfide core domain 1 precursor [Homo sap... 33 0.063
gi|22779936 WAP four-disulfide core domain 6 precursor [Homo sap... 33 0.063
gi|239753984 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|169168504 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|169167589 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|16751923 WAP, follistatin/kazal, immunoglobulin, kunitz and n... 30 0.41
gi|66346695 fibrillin 2 precursor [Homo sapiens] 29 0.70
gi|215490011 small inducible cytokine subfamily E, member 1 isof... 29 0.70
gi|215490009 small inducible cytokine subfamily E, member 1 isof... 29 0.70
gi|45006986 small inducible cytokine subfamily E, member 1 isofo... 29 0.70
gi|41327767 ADP-ribosylation factor-like 4D [Homo sapiens] 29 0.70
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 28 1.2
gi|110347412 latent transforming growth factor beta binding prot... 28 1.2
gi|110347431 latent transforming growth factor beta binding prot... 28 1.2
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 28 2.0
gi|7019415 Sec61 alpha 1 subunit [Homo sapiens] 28 2.0
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 27 2.6
>gi|4505787 elafin preproprotein [Homo sapiens]
Length = 117
Score = 243 bits (621), Expect = 2e-65
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MRASSFLIVVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVK 60
MRASSFLIVVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVK
Sbjct: 1 MRASSFLIVVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVK 60
Query: 61 AQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVPQ 117
AQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVPQ
Sbjct: 61 AQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVPQ 117
>gi|4507065 secretory leukocyte peptidase inhibitor precursor [Homo
sapiens]
Length = 132
Score = 61.2 bits (147), Expect = 2e-10
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 59 VKAQEPVKGPVST--KPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVP 116
+K +PV P T KPG CP+ +C MLNPPN C D C KCC G CG +C P
Sbjct: 70 IKCLDPVDTPNPTRRKPGKCPVTYGQCLMLNPPNFCEMDGQCKRDLKCCMGMCGKSCVSP 129
Score = 38.5 bits (88), Expect = 0.001
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 70 STKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVP 116
S K G CP + C D CPG K+CC +CG+ C P
Sbjct: 29 SFKAGVCPPKKSAQCLRYKKPECQSDWQCPGKKRCCPDTCGIKCLDP 75
>gi|21717822 WAP four-disulfide core domain 5 precursor [Homo
sapiens]
Length = 123
Score = 50.1 bits (118), Expect = 4e-07
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 69 VSTKPGSCPIILIRCAMLNPPNR-CLKDTDCPGIKKCCEGSCGMACFVP 116
VS K GSCP +RC L+P N C KD+DC G K+CC +CG C P
Sbjct: 74 VSVKLGSCPEDQLRC--LSPMNHLCHKDSDCSGKKRCCHSACGRDCRDP 120
Score = 37.4 bits (85), Expect = 0.003
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 72 KPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMAC 113
K G CP C +L+ P++C++D+ CP +KCC +C C
Sbjct: 30 KSGGCPPDDGPC-LLSVPDQCVEDSQCPLTRKCCYRACFRQC 70
>gi|20069858 WAP four-disulfide core domain 12 precursor [Homo
sapiens]
Length = 111
Score = 46.6 bits (109), Expect = 4e-06
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 61 AQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVP 116
A E VK + K G CP +RC +PP +C D DC G +KCC CG C +P
Sbjct: 20 AVEGVKEGIE-KAGVCPADNVRCFKSDPP-QCHTDQDCLGERKCCYLHCGFKCVIP 73
>gi|153946389 WAP four-disulfide core domain 8 precursor [Homo
sapiens]
Length = 241
Score = 43.1 bits (100), Expect = 5e-05
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 70 STKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVPQ 117
+ K G CP + C ++ P +CL+D +CP ++KCC CG+ C P+
Sbjct: 195 TVKKGFCPRKPLLCTKIDKP-KCLQDEECPLVEKCC-SHCGLKCMDPR 240
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 72 KPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMAC 113
K G CP+ PP+ C D DCP KCCE CG C
Sbjct: 150 KDGQCPLFPFTERKECPPS-CHSDIDCPQTDKCCESRCGFVC 190
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 69 VSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVP 116
+ KPG CP + C P+ C D DC +KCC +C C P
Sbjct: 44 IKHKPGLCPKERLTCTT-ELPDSCNTDFDCKEYQKCCFFACQKKCMDP 90
>gi|153946387 WAP four-disulfide core domain 8 precursor [Homo
sapiens]
Length = 241
Score = 43.1 bits (100), Expect = 5e-05
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 70 STKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVPQ 117
+ K G CP + C ++ P +CL+D +CP ++KCC CG+ C P+
Sbjct: 195 TVKKGFCPRKPLLCTKIDKP-KCLQDEECPLVEKCC-SHCGLKCMDPR 240
Score = 41.2 bits (95), Expect = 2e-04
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 72 KPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMAC 113
K G CP+ PP+ C D DCP KCCE CG C
Sbjct: 150 KDGQCPLFPFTERKECPPS-CHSDIDCPQTDKCCESRCGFVC 190
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 69 VSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVP 116
+ KPG CP + C P+ C D DC +KCC +C C P
Sbjct: 44 IKHKPGLCPKERLTCTT-ELPDSCNTDFDCKEYQKCCFFACQKKCMDP 90
>gi|32307109 WAP four-disulfide core domain 3 precursor [Homo
sapiens]
Length = 231
Score = 42.7 bits (99), Expect = 6e-05
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 76 CPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVP 116
CP ++ + + L RC+ D CPG+KKCC C +C VP
Sbjct: 76 CPRVIRKQSCLK---RCITDETCPGVKKCCTLGCNKSCVVP 113
Score = 36.2 bits (82), Expect = 0.006
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 74 GSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVP 116
G CP +L+ ++ C+ D +C +KCC+ CG C P
Sbjct: 168 GDCPKVLVGLCIVG----CVMDENCQAGEKCCKSGCGRFCVPP 206
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 74 GSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMAC 113
G CP + C L C D CP KCC CG C
Sbjct: 124 GECPADPLPCEEL-----CDGDASCPQGHKCCSTGCGRTC 158
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 72 KPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMAC 113
K G CP C L C D CP +KCC CG C
Sbjct: 29 KEGECPPHKNPCKEL-----CQGDELCPAEQKCCTTGCGRIC 65
>gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]
Length = 1318
Score = 39.7 bits (91), Expect = 5e-04
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 67 GPVSTKPGSCPIILIRCAMLNPPNR--CLKDTDCPGIKKCCEGSCGMACFVP 116
G +++PG+CP A P+ C D DCPG++KCC S G C P
Sbjct: 112 GQFTSRPGACP------AEGPEPSTSPCSLDIDCPGLEKCCPWSGGRYCMAP 157
>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
Length = 1446
Score = 39.7 bits (91), Expect = 5e-04
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 67 GPVSTKPGSCPIILIRCAMLNPPNR--CLKDTDCPGIKKCCEGSCGMACFVP 116
G +++PG+CP A P+ C D DCPG++KCC S G C P
Sbjct: 112 GQFTSRPGACP------AEGPEPSTSPCSLDIDCPGLEKCCPWSGGRYCMAP 157
>gi|56699495 WAP four-disulfide core domain 2 precursor [Homo
sapiens]
Length = 124
Score = 39.3 bits (90), Expect = 7e-04
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 72 KPGSCPIILIRCAMLNP-PNRCLKDTDCPGIKKCCEGSCG-MACFVP 116
K GSCP + I L ++C D+ CPG KCC CG ++C P
Sbjct: 76 KEGSCPQVNINFPQLGLCRDQCQVDSQCPGQMKCCRNGCGKVSCVTP 122
Score = 35.0 bits (79), Expect = 0.013
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 65 VKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVP 116
V G + K G CP + A N C+ D++C KCC C C +P
Sbjct: 25 VSGTGAEKTGVCPELQ---ADQNCTQECVSDSECADNLKCCSAGCATFCSLP 73
>gi|119395746 Kallmann syndrome 1 protein precursor [Homo sapiens]
Length = 680
Score = 38.5 bits (88), Expect = 0.001
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 92 CLKDTDCPGIKKCCEGSCGMACFVPQ 117
C D +C G+KKCC CG C VP+
Sbjct: 151 CEVDNECSGVKKCCSNGCGHTCQVPK 176
>gi|10732863 serine peptidase inhibitor-like, with Kunitz and WAP
domains 1 isoform 1 precursor [Homo sapiens]
Length = 133
Score = 35.8 bits (81), Expect = 0.007
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 65 VKGPVSTK---PGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMAC 113
V+GP T P CP I C + C KD C KKCC SCG C
Sbjct: 19 VQGPGLTDWLFPRRCPKIREECEF-QERDVCTKDRQCQDNKKCCVFSCGKKC 69
>gi|31563528 serine peptidase inhibitor-like, with Kunitz and WAP
domains 1 isoform 2 [Homo sapiens]
Length = 117
Score = 35.0 bits (79), Expect = 0.013
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 74 GSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMAC 113
G CP I C + C KD C KKCC SCG C
Sbjct: 15 GRCPKIREECEF-QERDVCTKDRQCQDNKKCCVFSCGKKC 53
>gi|18379353 WAP four-disulfide core domain 1 precursor [Homo
sapiens]
Length = 220
Score = 32.7 bits (73), Expect = 0.063
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 68 PVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMAC 113
P + PG+C RC D++CP ++CC C AC
Sbjct: 70 PRTLPPGACQAA-----------RCQADSECPRHRRCCYNGCAYAC 104
>gi|22779936 WAP four-disulfide core domain 6 precursor [Homo
sapiens]
Length = 86
Score = 32.7 bits (73), Expect = 0.063
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 76 CPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMAC 113
CP I + C + ++C K DCP KCC S G C
Sbjct: 33 CPKIKVECEV-EEIDQCTKPRDCPENMKCCPFSRGKKC 69
>gi|239753984 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 58 KVKAQEPVKGPVSTKP----GSCPIILIRCAMLNPPNRCLKDTDCPGIKKC 104
K K+ EPV P ++P S P + LN N+C + C GIK C
Sbjct: 112 KQKSLEPVSSPCLSRPRIPVSSSPAPSCIVSALNLGNKCFQHKRCEGIKTC 162
>gi|169168504 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 58 KVKAQEPVKGPVSTKP----GSCPIILIRCAMLNPPNRCLKDTDCPGIKKC 104
K K+ EPV P ++P S P + LN N+C + C GIK C
Sbjct: 112 KQKSLEPVSSPCLSRPRIPVSSSPAPSCIVSALNLGNKCFQHKRCEGIKTC 162
>gi|169167589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 58 KVKAQEPVKGPVSTKP----GSCPIILIRCAMLNPPNRCLKDTDCPGIKKC 104
K K+ EPV P ++P S P + LN N+C + C GIK C
Sbjct: 112 KQKSLEPVSSPCLSRPRIPVSSSPAPSCIVSALNLGNKCFQHKRCEGIKTC 162
>gi|16751923 WAP, follistatin/kazal, immunoglobulin, kunitz and
netrin domain containing 1 precursor [Homo sapiens]
Length = 548
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 69 VSTKPGSCPIILIRCAMLNPPN----RCLKDTDCPGIKKCCEGSCGM 111
+ + PG CP L ++ + C +D DC +KCC CG+
Sbjct: 26 LGSHPGVCPNQLSPNLWVDAQSTCERECSRDQDCAAAEKCCINVCGL 72
>gi|66346695 fibrillin 2 precursor [Homo sapiens]
Length = 2912
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 50 QVSVKGQDKVKAQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCE--- 106
+++ G++ + E V P S PG+C + + PP +K +C I +C E
Sbjct: 2006 ELTPDGKNCIDTNECVALPGSCSPGTCQNLEGSFRCICPPGYEVKSENCIDINECDEDPN 2065
Query: 107 ----GSC-----GMACFVP 116
GSC G C P
Sbjct: 2066 ICLFGSCTNTPGGFQCLCP 2084
>gi|215490011 small inducible cytokine subfamily E, member 1 isoform
b precursor [Homo sapiens]
Length = 336
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 13 LIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVKAQEPVKGPVSTK 72
+++ ++ AVT V ++ +KG + K ++ KG+ K K Q+ + G +K
Sbjct: 115 MVSENVIQSTAVTTVSSGTKEQIKGGT--GDEKKAKEKIEKKGEKKEKKQQSIAGSADSK 172
Query: 73 P 73
P
Sbjct: 173 P 173
>gi|215490009 small inducible cytokine subfamily E, member 1 isoform
a precursor [Homo sapiens]
Length = 312
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 13 LIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVKAQEPVKGPVSTK 72
+++ ++ AVT V ++ +KG + K ++ KG+ K K Q+ + G +K
Sbjct: 91 MVSENVIQSTAVTTVSSGTKEQIKGGT--GDEKKAKEKIEKKGEKKEKKQQSIAGSADSK 148
Query: 73 P 73
P
Sbjct: 149 P 149
>gi|45006986 small inducible cytokine subfamily E, member 1 isoform
a precursor [Homo sapiens]
Length = 312
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 13 LIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVKAQEPVKGPVSTK 72
+++ ++ AVT V ++ +KG + K ++ KG+ K K Q+ + G +K
Sbjct: 91 MVSENVIQSTAVTTVSSGTKEQIKGGT--GDEKKAKEKIEKKGEKKEKKQQSIAGSADSK 148
Query: 73 P 73
P
Sbjct: 149 P 149
>gi|41327767 ADP-ribosylation factor-like 4D [Homo sapiens]
Length = 201
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 24 VTGVPVKGQDTVKGRVPFNGQDPVKGQV-SVKGQDKVK 60
V VP KG +T K RVP G + QV V GQ+K++
Sbjct: 47 VQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLR 84
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 29 VKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVKAQEPVKGPVSTK 72
++GQ GR GQ ++G KG+ K + V+G + +K
Sbjct: 708 IQGQKGENGRQGIPGQQGIQGHHGAKGERGEKGEPGVRGAIGSK 751
>gi|110347412 latent transforming growth factor beta binding protein
4 isoform b [Homo sapiens]
Length = 1587
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 55 GQDKVKAQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCE 106
G+ ++ + P + P P CP+I + P+RCL D G K C+
Sbjct: 95 GRGLLRRRPPQRAPAGKAPVLCPLICHNGGVCVKPDRCLCPPDFAG--KFCQ 144
>gi|110347431 latent transforming growth factor beta binding protein
4 isoform a [Homo sapiens]
Length = 1624
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 55 GQDKVKAQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCE 106
G+ ++ + P + P P CP+I + P+RCL D G K C+
Sbjct: 132 GRGLLRRRPPQRAPAGKAPVLCPLICHNGGVCVKPDRCLCPPDFAG--KFCQ 181
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 38 RVPFNGQDPVKGQVSVKGQDKVKAQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDT 96
R +NG+ V+G+V K Q + GP TK + L R +LN R L+D+
Sbjct: 1321 RQGYNGRPNVEGKVLPGSNGKPNGQRIINGPQGTK---WVVDLDRGLVLNAEGRYLQDS 1376
>gi|7019415 Sec61 alpha 1 subunit [Homo sapiens]
Length = 476
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 9 VVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVKAQEPVKG- 67
+++ L+AG ++E DT K R FNG + G + GQ V + G
Sbjct: 89 LIMQLLAGAKIIEVG---------DTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGD 139
Query: 68 PVSTKPGSCPIILIR 82
P G C +I I+
Sbjct: 140 PSEMGAGICLLITIQ 154
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 14 IAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVKAQEPVKGPVSTKP 73
+AGT +A +T P T+ P + + + +++ Q PVKG +S +
Sbjct: 1800 LAGTPQAQATMTPPPNLASTTMNLTSPLLQCNMSATNIGIPHTQRLQGQMPVKGHISIRS 1859
Query: 74 GSCPI 78
S P+
Sbjct: 1860 KSAPL 1864
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,940,843
Number of Sequences: 37866
Number of extensions: 225792
Number of successful extensions: 671
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 58
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.