Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: WFDC6 Sequence: fasta or formatted (86aa) NCBI GI: 22779936
Description:

WAP four-disulfide core domain 6 precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.2          1           1
 C cysteine            8.1          7           2
 D aspartate           4.7          4           1
 E glutamate          11.6         10           2
 F phenylalanine       3.5          3           1
 G glycine             8.1          7           1
 H histidine           2.3          2           1
 I isoleucine          7.0          6           1
 K lysine             10.5          9           2
 L leucine            12.8         11           2
 M methionine          2.3          2           1
 N asparagine          1.2          1           1
 P proline             9.3          8           1
 Q glutamine           2.3          2           1
 R arginine            3.5          3           1
 S serine              3.5          3           1
 T threonine           2.3          2           1
 V valine              4.7          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WAP four-disulfide core domain 6 precursor 
SPINLW1               0.404   serine peptidase inhibitor-like, with Kunitz and WAP...
SPINLW1               0.242   serine peptidase inhibitor-like, with Kunitz and WAP...
WFDC8                 0.118   WAP four-disulfide core domain 8 precursor 
WFDC8                 0.118   WAP four-disulfide core domain 8 precursor 
WFDC12                0.099   WAP four-disulfide core domain 12 precursor 
SLPI                  0.081   secretory leukocyte peptidase inhibitor precursor [Ho...
PI3                   0.050   elafin preproprotein 
WFDC5                 0.043   WAP four-disulfide core domain 5 precursor 
WFDC3                 0.043   WAP four-disulfide core domain 3 precursor 
UMODL1                0.037   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.037   uromodulin-like 1 isoform 2 precursor 
SAP130                0.037   Sin3A-associated protein, 130kDa isoform b 
SAP130                0.037   Sin3A-associated protein, 130kDa isoform a 
EMR1                  0.031   egf-like module containing, mucin-like, hormone rece...
LOC100293983          0.025   PREDICTED: similar to mucin, partial 
WFDC2                 0.019   WAP four-disulfide core domain 2 precursor 
SLC12A9               0.019   solute carrier family 12 (potassium/chloride transpo...
SERPINC1              0.012   serpin peptidase inhibitor, clade C, member 1 
R3HDM1                0.012   R3H domain containing 1 
WFDC10A               0.012   WAP four-disulfide core domain 10A precursor 
LTBP3                 0.006   latent transforming growth factor beta binding prot...
LTBP3                 0.006   latent transforming growth factor beta binding prote...
GRM8                  0.006   glutamate receptor, metabotropic 8 isoform b precur...
GRM8                  0.006   glutamate receptor, metabotropic 8 isoform a precur...
PRAMEF7               0.006   PRAME family member 7 
LOC729516             0.006   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.006   PRAME family member 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press