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Search of human proteins with 4505721
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505721 peroxisomal biogenesis factor 12 [Homo sapiens]
(359 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505721 peroxisomal biogenesis factor 12 [Homo sapiens] 731 0.0
gi|30425428 deltex homolog 3 [Homo sapiens] 39 0.009
gi|223278368 neuralized-like [Homo sapiens] 37 0.036
gi|88702791 mouse double minute 4 homolog [Homo sapiens] 37 0.036
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 35 0.080
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 35 0.080
gi|217416388 neuralized homolog 1B [Homo sapiens] 35 0.14
gi|45594312 TNF receptor-associated factor 7 [Homo sapiens] 33 0.30
gi|7662230 ring finger protein 40 [Homo sapiens] 33 0.30
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 32 0.67
gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo ... 32 1.2
gi|156231067 TBC1 domain family, member 8 [Homo sapiens] 32 1.2
gi|22027622 TNF receptor-associated factor 4 [Homo sapiens] 32 1.2
gi|109240538 polycomb group ring finger 1 [Homo sapiens] 32 1.2
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 31 1.5
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 31 1.5
gi|34878777 ring finger protein 20 [Homo sapiens] 31 1.5
gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens] 31 2.0
gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens] 31 2.0
gi|19923717 deltex 3-like [Homo sapiens] 30 3.3
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 30 3.3
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 30 3.3
gi|6005964 ring finger protein 110 [Homo sapiens] 30 4.4
gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens] 29 5.7
gi|34452681 ring finger protein 10 [Homo sapiens] 29 5.7
gi|14149631 ring finger protein 112 [Homo sapiens] 29 5.7
gi|29126241 ferritin mitochondrial [Homo sapiens] 29 7.5
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 29 7.5
gi|31742478 ring finger protein 3 [Homo sapiens] 28 9.7
>gi|4505721 peroxisomal biogenesis factor 12 [Homo sapiens]
Length = 359
Score = 731 bits (1886), Expect = 0.0
Identities = 359/359 (100%), Positives = 359/359 (100%)
Query: 1 MAEHGAHFTAASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFD 60
MAEHGAHFTAASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFD
Sbjct: 1 MAEHGAHFTAASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFD 60
Query: 61 EIFTLLDLLLQQHYLSRTSASFSENFYGLKRIVMGDTHKSQRLASAGLPKQQLWKSIMFL 120
EIFTLLDLLLQQHYLSRTSASFSENFYGLKRIVMGDTHKSQRLASAGLPKQQLWKSIMFL
Sbjct: 61 EIFTLLDLLLQQHYLSRTSASFSENFYGLKRIVMGDTHKSQRLASAGLPKQQLWKSIMFL 120
Query: 121 VLLPYLKVKLEKLVSSLREEDEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLR 180
VLLPYLKVKLEKLVSSLREEDEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLR
Sbjct: 121 VLLPYLKVKLEKLVSSLREEDEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLR 180
Query: 181 YILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINSALKKAV 240
YILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINSALKKAV
Sbjct: 181 YILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINSALKKAV 240
Query: 241 GGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKM 300
GGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKM
Sbjct: 241 GGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKM 300
Query: 301 KTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLYSPEN 359
KTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLYSPEN
Sbjct: 301 KTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLYSPEN 359
>gi|30425428 deltex homolog 3 [Homo sapiens]
Length = 347
Score = 38.5 bits (88), Expect = 0.009
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 279 LPTPPPPVHLDYNSDSPLLPKMK-------TVCPLCRKTRVNDTVLATSGYVFCYRCVFH 331
LP PPPP+ PL P+++ + CP+C N L + FC C+
Sbjct: 138 LPPPPPPL------PPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKCRHSFCEGCITR 191
Query: 332 YVRSHQACPITG 343
++ +ACP+ G
Sbjct: 192 ALQVKKACPMCG 203
>gi|223278368 neuralized-like [Homo sapiens]
Length = 574
Score = 36.6 bits (83), Expect = 0.036
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 282 PPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYV-FCYRCVFHYVRS-HQAC 339
P PV L + +P L + C +C + V DTV+ T G++ CY C ++ H C
Sbjct: 499 PNSPVSLPESPVTPGLGQWSDECTICYEHAV-DTVIYTCGHMCLCYACGLRLKKALHACC 557
Query: 340 PITGYPTEVQHLIKLY 355
PI P ++ +IK Y
Sbjct: 558 PICRRP--IKDIIKTY 571
>gi|88702791 mouse double minute 4 homolog [Homo sapiens]
Length = 490
Score = 36.6 bits (83), Expect = 0.036
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 258 LQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVL 317
++FLD +SSE+QETI S+ D + +K C LC K + ++
Sbjct: 392 VEFLDLAHSSESQETISSMGEQLDNLSEQRTDTENMEDCQNLLKP-CSLCEKRPRDGNII 450
Query: 318 --ATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLY 355
T V C+ C ++ +CPI E+Q +IK++
Sbjct: 451 HGRTGHLVTCFHCARRLKKAGASCPIC--KKEIQLVIKVF 488
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 35.4 bits (80), Expect = 0.080
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 303 VCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTE-VQHL 351
VCP+C + + + G+ FCY+C+ + + CP Y + + HL
Sbjct: 135 VCPICFDM-IEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHL 183
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 35.4 bits (80), Expect = 0.080
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 303 VCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTE-VQHL 351
VCP+C + + + G+ FCY+C+ + + CP Y + + HL
Sbjct: 135 VCPICFDM-IEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHL 183
>gi|217416388 neuralized homolog 1B [Homo sapiens]
Length = 555
Score = 34.7 bits (78), Expect = 0.14
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 267 SENQETIKSLTALPTPP-----PPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSG 321
S NQ + S ++L T P PPV ++ P K C +C V DTV+ T G
Sbjct: 462 SVNQSSSASESSLVTAPSSPLSPPVSPVFSPPEPAGIK-NGECTVCFDGEV-DTVIYTCG 519
Query: 322 YV-FCYRCVFHYVRSHQA-CPITGYPTEVQHLIKLYSP 357
++ C+ C R +A CPI P ++ +IK+Y P
Sbjct: 520 HMCLCHSCGLRLKRQARACCPICRRP--IKDVIKIYRP 555
>gi|45594312 TNF receptor-associated factor 7 [Homo sapiens]
Length = 670
Score = 33.5 bits (75), Expect = 0.30
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 267 SENQETIKSLTALPT----PPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGY 322
SE+ +++S +LP P P V + P +K C LC D V+ T G+
Sbjct: 97 SESSMSLRSTFSLPEEEEEPEPLVFAEQ-------PSVKLCCQLCCSV-FKDPVITTCGH 148
Query: 323 VFCYRCVFHYVRSHQACPI 341
FC RC + CP+
Sbjct: 149 TFCRRCAL----KSEKCPV 163
>gi|7662230 ring finger protein 40 [Homo sapiens]
Length = 1001
Score = 33.5 bits (75), Expect = 0.30
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 299 KMKTVCPLCRKTRVNDTVLATSGYVFCYRCV-FHYVRSHQACP 340
K + CP C TR D VL +VFC+ CV Y + CP
Sbjct: 943 KARLTCPCCN-TRKKDAVLTKCFHVFCFECVRGRYEARQRKCP 984
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 32.3 bits (72), Expect = 0.67
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 293 DSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACP 340
D + P +K C LC K + D + G+VFC CV +V +CP
Sbjct: 9 DGDVDPDLK--CALCHKV-LEDPLTTPCGHVFCAGCVLPWVVQEGSCP 53
>gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo
sapiens]
Length = 1045
Score = 31.6 bits (70), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 304 CPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYP 345
CP+C N + L + FC+RCV + ++ CP+ P
Sbjct: 103 CPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQP 144
>gi|156231067 TBC1 domain family, member 8 [Homo sapiens]
Length = 1140
Score = 31.6 bits (70), Expect = 1.2
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 257 FLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLL-PKMKTVCPL 306
F+ LD Y+ E E IK L L PP D +S SPL P + T PL
Sbjct: 901 FVSCLDIMYNGEMNEKIKLLYRLHIPPALTENDRDSQSPLRNPLLSTSRPL 951
>gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
Length = 470
Score = 31.6 bits (70), Expect = 1.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 298 PKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYV 333
PK + +CPLC K ++T G+ FC C+ ++
Sbjct: 12 PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFL 47
>gi|109240538 polycomb group ring finger 1 [Homo sapiens]
Length = 259
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 303 VCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPT-EVQHLIKL 354
VC LC V+ T + + FC C+ Y+++ + CP+ E Q L+ L
Sbjct: 46 VCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNL 98
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 303 VCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKL 354
+C LC + R + T G++FC+ C+ + S CP+ Q LI L
Sbjct: 292 LCTLCLEERRHPTA-TPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYL 342
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 303 VCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKL 354
+C LC + R + T G++FC+ C+ + S CP+ Q LI L
Sbjct: 272 LCTLCLEERRHPTA-TPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYL 322
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 299 KMKTVCPLCRKTRVNDTVLATSGYVFCYRCV-FHYVRSHQACP 340
K + CP C R D VL +VFC+ CV Y + CP
Sbjct: 917 KARLTCPCCNM-RKKDAVLTKCFHVFCFECVKTRYDTRQRKCP 958
>gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 30.8 bits (68), Expect = 2.0
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 303 VCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHL 351
+CP+C + FC C+ + Q CP+ V HL
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHL 65
>gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 30.8 bits (68), Expect = 2.0
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 303 VCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHL 351
+CP+C + FC C+ + Q CP+ V HL
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHL 65
>gi|19923717 deltex 3-like [Homo sapiens]
Length = 740
Score = 30.0 bits (66), Expect = 3.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 284 PPVHLDYNSD-SPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACP 340
PP+ +S+ S L K K +C +C T N VL + FC C+ + CP
Sbjct: 540 PPLKGSVSSEASELDKKEKGICVICMDTISNKKVLPKCKHEFCAPCINKAMSYKPICP 597
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 30.0 bits (66), Expect = 3.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 291 NSDSPL---LPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQ---ACPI 341
N SP+ + K +C +C + N VL + FC RC+ +Y+ +H +CP+
Sbjct: 7 NIPSPVVRQIDKQFLICSICLERYKNPKVLPCL-HTFCERCLQNYIPAHSLTLSCPV 62
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 30.0 bits (66), Expect = 3.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 291 NSDSPL---LPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQ---ACPI 341
N SP+ + K +C +C + N VL + FC RC+ +Y+ +H +CP+
Sbjct: 34 NIPSPVVRQIDKQFLICSICLERYKNPKVLPCL-HTFCERCLQNYIPAHSLTLSCPV 89
>gi|6005964 ring finger protein 110 [Homo sapiens]
Length = 344
Score = 29.6 bits (65), Expect = 4.4
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 303 VCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPI 341
+C LC ++ T + + FC C+ Y+ +++ CP+
Sbjct: 17 MCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPM 55
>gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens]
Length = 326
Score = 29.3 bits (64), Expect = 5.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 303 VCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPI 341
+C LC ++ T + + FC C+ Y+ + + CPI
Sbjct: 17 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPI 55
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 29.3 bits (64), Expect = 5.7
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 304 CPLCRKTRVNDTVLATSGYVFCYRCVFHYV----RSHQACPI 341
CP+C + G++FC+ C+ HY+ ++ CPI
Sbjct: 225 CPICLYPPTAAKI-TRCGHIFCWACILHYLSLSEKTWSKCPI 265
>gi|14149631 ring finger protein 112 [Homo sapiens]
Length = 632
Score = 29.3 bits (64), Expect = 5.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 281 TPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRC 328
TP P + L P+ P+ C +C + R+ D + G+ FC RC
Sbjct: 35 TPFPKLELGLGPQ-PMAPRELPTCSICLE-RLRDPISLDCGHDFCIRC 80
>gi|29126241 ferritin mitochondrial [Homo sapiens]
Length = 242
Score = 28.9 bits (63), Expect = 7.5
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 161 AAYPFVNMAW----EGWFLVQQLRYILGKA----QHHSPLLRLAGVQLGRLTVQDIQALE 212
A+Y +++MA+ + L RY L ++ +H L+RL + GR+ +QDI+ E
Sbjct: 90 ASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKPE 149
Query: 213 HKPAKASMMQQPARSVSEK-INSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQE 271
++ + + EK +N +L + AL+ G FL+ +Y +E +
Sbjct: 150 QDDWESGLHAMECALLLEKNVNQSLLEL---HALASDKG---DPHLCDFLETYYLNEQVK 203
Query: 272 TIKSL 276
+IK L
Sbjct: 204 SIKEL 208
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 28.9 bits (63), Expect = 7.5
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 211 LEHKPAKASMMQQPARSVSEKINSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQ 270
L P+ + P R S K +SA KK A+S LD +S+
Sbjct: 206 LSPSPSLRKSSKSPKRKSSPKSSSASKKDRKTSAVSSP-----------LLDQQRNSKTN 254
Query: 271 ETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTR 311
++ K P+PPPP+ D K K + KTR
Sbjct: 255 QSKKKGPRTPSPPPPIPEDIALGKKYKEKYKVKDRIEEKTR 295
>gi|31742478 ring finger protein 3 [Homo sapiens]
Length = 242
Score = 28.5 bits (62), Expect = 9.7
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 304 CPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACP 340
C LC ++ T + + FC C+ Y+ + CP
Sbjct: 17 CRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCP 53
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,691,916
Number of Sequences: 37866
Number of extensions: 567848
Number of successful extensions: 1975
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1962
Number of HSP's gapped (non-prelim): 29
length of query: 359
length of database: 18,247,518
effective HSP length: 103
effective length of query: 256
effective length of database: 14,347,320
effective search space: 3672913920
effective search space used: 3672913920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.