Guide to the Human Genome
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Name: PEX12 Sequence: fasta or formatted (359aa) NCBI GI: 4505721
Description:

peroxisomal biogenesis factor 12

Referenced in:

Peroxisomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         28           2
 C cysteine            1.4          5           1
 D aspartate           3.3         12           2
 E glutamate           4.5         16           2
 F phenylalanine       4.7         17           2
 G glycine             4.2         15           2
 H histidine           3.9         14           2
 I isoleucine          3.1         11           1
 K lysine              5.6         20           2
 L leucine            12.8         46           3
 M methionine          2.2          8           2
 N asparagine          2.2          8           1
 P proline             6.1         22           4
 Q glutamine           5.6         20           2
 R arginine            4.7         17           1
 S serine              8.9         32           2
 T threonine           4.7         17           1
 V valine              7.8         28           2
 W tryptophan          2.2          8           2
 Y tyrosine            4.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisomal biogenesis factor 12 
DTX3                  0.020   deltex homolog 3 
NEURL                 0.017   neuralized-like 
MDM4                  0.017   mouse double minute 4 homolog 
RFWD2                 0.014   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.014   ring finger and WD repeat domain 2 isoform d24 [Homo...
NEURL1B               0.014   neuralized homolog 1B 
TRAF7                 0.011   TNF receptor-associated factor 7 
RNF40                 0.011   ring finger protein 40 
PDZRN3                0.010   PDZ domain containing ring finger 3 
TOPORS                0.010   topoisomerase I binding, arginine/serine-rich 
TBC1D8                0.010   TBC1 domain family, member 8 
TRAF4                 0.010   TNF receptor-associated factor 4 
PCGF1                 0.010   polycomb group ring finger 1 
PEX10                 0.008   peroxisome biogenesis factor 10 isoform 1 
PEX10                 0.008   peroxisome biogenesis factor 10 isoform 2 
RNF20                 0.008   ring finger protein 20 
RNF41                 0.008   ring finger protein 41 isoform 1 
RNF41                 0.008   ring finger protein 41 isoform 1 
DTX3L                 0.007   deltex 3-like 
TRIM2                 0.007   tripartite motif-containing 2 isoform 2 
TRIM2                 0.007   tripartite motif-containing 2 isoform 1 
PCGF2                 0.007   ring finger protein 110 
BMI1                  0.006   BMI1 polycomb ring finger oncogene 
RNF10                 0.006   ring finger protein 10 
RNF112                0.006   ring finger protein 112 
FTMT                  0.006   ferritin mitochondrial 
ZC3H13                0.006   zinc finger CCCH-type containing 13 
PCGF3                 0.004   ring finger protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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