BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4505571 sequestosome 1 isoform 1 [Homo sapiens] (440 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4505571 sequestosome 1 isoform 1 [Homo sapiens] 919 0.0 gi|214830451 sequestosome 1 isoform 2 [Homo sapiens] 751 0.0 gi|214830438 sequestosome 1 isoform 2 [Homo sapiens] 751 0.0 gi|14110378 neighbor of BRCA1 gene 1 [Homo sapiens] 55 1e-07 gi|14110375 neighbor of BRCA1 gene 1 [Homo sapiens] 55 1e-07 gi|14110381 neighbor of BRCA1 gene 1 [Homo sapiens] 55 1e-07 gi|30348954 mindbomb homolog 1 [Homo sapiens] 48 2e-05 gi|126032348 hect domain and RLD 2 [Homo sapiens] 47 3e-05 gi|21264330 mindbomb homolog 2 [Homo sapiens] 45 1e-04 gi|46852178 potassium channel modulatory factor 1 [Homo sapiens] 44 4e-04 gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sap... 43 5e-04 gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 40 0.003 gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 40 0.005 gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 40 0.005 gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 40 0.005 gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens] 39 0.007 gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.009 gi|157364926 dystrotelin [Homo sapiens] 39 0.009 gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 39 0.012 gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 37 0.027 gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 37 0.027 gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens] 37 0.036 gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 37 0.047 gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 37 0.047 gi|42718005 dystrobrevin alpha isoform 1 [Homo sapiens] 37 0.047 gi|55741849 WD repeat domain 22 [Homo sapiens] 36 0.061 gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 36 0.061 gi|42718003 dystrobrevin alpha isoform 3 [Homo sapiens] 36 0.061 gi|104526627 triadin [Homo sapiens] 36 0.061 gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 36 0.079 >gi|4505571 sequestosome 1 isoform 1 [Homo sapiens] Length = 440 Score = 919 bits (2374), Expect = 0.0 Identities = 440/440 (100%), Positives = 440/440 (100%) Query: 1 MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRP 60 MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRP Sbjct: 1 MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPCERLLSRVAALFPALRP 60 Query: 61 GGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRN 120 GGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRN Sbjct: 61 GGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRN 120 Query: 121 MVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS 180 MVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS Sbjct: 121 MVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFS 180 Query: 181 HSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNV 240 HSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNV Sbjct: 181 HSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNV 240 Query: 241 GESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNV 300 GESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNV Sbjct: 241 GESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNV 300 Query: 301 EGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPE 360 EGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPE Sbjct: 301 EGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPE 360 Query: 361 SEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTK 420 SEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTK Sbjct: 361 SEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTK 420 Query: 421 NYDIGAALDTIQYSKHPPPL 440 NYDIGAALDTIQYSKHPPPL Sbjct: 421 NYDIGAALDTIQYSKHPPPL 440 >gi|214830451 sequestosome 1 isoform 2 [Homo sapiens] Length = 356 Score = 751 bits (1940), Expect = 0.0 Identities = 356/356 (100%), Positives = 356/356 (100%) Query: 85 MAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSV 144 MAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSV Sbjct: 1 MAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSV 60 Query: 145 CPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFSHSRWLRKVKHGHFGWPGWEMGPPG 204 CPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFSHSRWLRKVKHGHFGWPGWEMGPPG Sbjct: 61 CPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFSHSRWLRKVKHGHFGWPGWEMGPPG 120 Query: 205 NWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGK 264 NWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGK Sbjct: 121 NWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGK 180 Query: 265 RSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEE 324 RSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEE Sbjct: 181 RSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEE 240 Query: 325 QMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYP 384 QMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYP Sbjct: 241 QMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYP 300 Query: 385 HLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKHPPPL 440 HLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKHPPPL Sbjct: 301 HLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKHPPPL 356 >gi|214830438 sequestosome 1 isoform 2 [Homo sapiens] Length = 356 Score = 751 bits (1940), Expect = 0.0 Identities = 356/356 (100%), Positives = 356/356 (100%) Query: 85 MAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSV 144 MAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSV Sbjct: 1 MAMSYVKDDIFRIYIKEKKECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSV 60 Query: 145 CPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFSHSRWLRKVKHGHFGWPGWEMGPPG 204 CPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFSHSRWLRKVKHGHFGWPGWEMGPPG Sbjct: 61 CPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFSHSRWLRKVKHGHFGWPGWEMGPPG 120 Query: 205 NWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGK 264 NWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGK Sbjct: 121 NWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGK 180 Query: 265 RSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEE 324 RSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEE Sbjct: 181 RSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEE 240 Query: 325 QMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYP 384 QMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYP Sbjct: 241 QMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYP 300 Query: 385 HLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKHPPPL 440 HLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKHPPPL Sbjct: 301 HLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKHPPPL 356 >gi|14110378 neighbor of BRCA1 gene 1 [Homo sapiens] Length = 966 Score = 55.5 bits (132), Expect = 1e-07 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 105 CRRDHRPPCAQEA---PRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEG--KGL 159 C + P ++E P N ++ C+ C +VG RY+CS+CP Y++C CE G Sbjct: 191 CPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNICEDCEAGPYGH 250 Query: 160 HRGHTKLAFPSPFGHLSEGFSHSRW 184 H L P SE F HS++ Sbjct: 251 DTNHVLLKLRRPVVGSSEPFCHSKY 275 >gi|14110375 neighbor of BRCA1 gene 1 [Homo sapiens] Length = 966 Score = 55.5 bits (132), Expect = 1e-07 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 105 CRRDHRPPCAQEA---PRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEG--KGL 159 C + P ++E P N ++ C+ C +VG RY+CS+CP Y++C CE G Sbjct: 191 CPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNICEDCEAGPYGH 250 Query: 160 HRGHTKLAFPSPFGHLSEGFSHSRW 184 H L P SE F HS++ Sbjct: 251 DTNHVLLKLRRPVVGSSEPFCHSKY 275 >gi|14110381 neighbor of BRCA1 gene 1 [Homo sapiens] Length = 966 Score = 55.5 bits (132), Expect = 1e-07 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 105 CRRDHRPPCAQEA---PRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEG--KGL 159 C + P ++E P N ++ C+ C +VG RY+CS+CP Y++C CE G Sbjct: 191 CPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNICEDCEAGPYGH 250 Query: 160 HRGHTKLAFPSPFGHLSEGFSHSRW 184 H L P SE F HS++ Sbjct: 251 DTNHVLLKLRRPVVGSSEPFCHSKY 275 >gi|30348954 mindbomb homolog 1 [Homo sapiens] Length = 1006 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Query: 117 APRNMVHPNVICDGCNG-PVVGTRYKCSVCPDYDLCSVC-EGKGLHRGHTKLAFPSP 171 AP + H +CD C P++G R+KC+ C +YDLC+VC G H H +P Sbjct: 74 APTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRITTP 130 >gi|126032348 hect domain and RLD 2 [Homo sapiens] Length = 4834 Score = 47.0 bits (110), Expect = 3e-05 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 13/82 (15%) Query: 122 VHPNVICDGCNG-PVVGTRYKCSVCPDYDLCSVC-EGKGLHRGHTKLAFPSPFGHLSEGF 179 +HP V CDGC P+ G+R+KC C D+D C C + K + HT FG ++E Sbjct: 2702 IHPGVTCDGCQMFPINGSRFKCRNCDDFDFCETCFKTKKHNTRHT-------FGRINEPG 2754 Query: 180 SHS----RWLRKVKHGHFGWPG 197 + R +++K H PG Sbjct: 2755 QSAVFCGRSGKQLKRCHSSQPG 2776 >gi|21264330 mindbomb homolog 2 [Homo sapiens] Length = 1013 Score = 45.4 bits (106), Expect = 1e-04 Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Query: 123 HPNVICDGCNGPVV-GTRYKCSVCPDYDLCSVC 154 HPN+ICD C + G R+KC VC DYDLC+ C Sbjct: 144 HPNIICDCCKKHGLRGMRWKCRVCLDYDLCTQC 176 >gi|46852178 potassium channel modulatory factor 1 [Homo sapiens] Length = 381 Score = 43.5 bits (101), Expect = 4e-04 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 123 HPNVICDGC-NGPVVGTRYKCSVCPDYDLCSVCEGKG 158 H V CD C G G RYKC +C DYDLC+ C G Sbjct: 4 HEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESG 40 >gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sapiens] Length = 2961 Score = 43.1 bits (100), Expect = 5e-04 Identities = 16/34 (47%), Positives = 21/34 (61%) Query: 121 MVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVC 154 MV+ CD C G ++G R C+VC D+DLC C Sbjct: 1825 MVNMEFTCDHCQGLIIGRRMNCNVCDDFDLCYGC 1858 Score = 37.4 bits (85), Expect = 0.027 Identities = 13/35 (37%), Positives = 21/35 (60%) Query: 120 NMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVC 154 ++++ ++ CDGC+ RY+C C D DLC C Sbjct: 1775 DLLNVDISCDGCDEIAPWHRYRCLQCSDMDLCKTC 1809 >gi|237757326 synaptojanin 1 isoform d [Homo sapiens] Length = 1526 Score = 40.4 bits (93), Expect = 0.003 Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 20/215 (9%) Query: 202 PPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEH 261 PP S P+AG A PGP S + P+ P + A+ L E Sbjct: 1123 PPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQSKTSE 1182 Query: 262 GGKRSRL--TPVSPESSSTEEKSSSQPSSCCSDP----------SKPGGNVEGATQSLAE 309 K S P+ P+++ + S P+ +P S P N+E Q Sbjct: 1183 TSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPR 1242 Query: 310 QMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDP 369 +L SE + Q++++ S G + S ++DP +L + S+ S+ Sbjct: 1243 SRSSHSLPSEASSQPQVKTNGISDGKRE----SPLKIDPFE-DLSFNLLAVSKAQLSV-- 1295 Query: 370 SQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSM 404 Q P + LP ++ S+S M +M Sbjct: 1296 -QTSPVPTPDPKRLIQLPSATQSNVLSSVSCMPTM 1329 >gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] Length = 1499 Score = 39.7 bits (91), Expect = 0.005 Identities = 47/197 (23%), Positives = 69/197 (35%), Gaps = 31/197 (15%) Query: 124 PNVICDGCNGPVVGTRYKCS--------VCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHL 175 P IC NG ++ + +C V P + C VC T + FG Sbjct: 58 PCQICVCDNGAILCDKIECQDVLDCADPVTPPGECCPVCS-------QTPGGGNTNFGRG 110 Query: 176 SEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTA------------- 222 +G L V G G PG GPPG+ PR R + RPGP Sbjct: 111 RKGQKGEPGLVPVVTGIRGRPG-PAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQ 169 Query: 223 ESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSS--TEE 280 A GP PS + +A ++ L + + + G + PV P + Sbjct: 170 PGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQ 229 Query: 281 KSSSQPSSCCSDPSKPG 297 + + P+ +P PG Sbjct: 230 QGGAGPTGPPGEPGDPG 246 >gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 [Homo sapiens] Length = 559 Score = 39.7 bits (91), Expect = 0.005 Identities = 54/241 (22%), Positives = 84/241 (34%), Gaps = 50/241 (20%) Query: 201 GPPGNWSPRPPRAGEARPGP----------------------------TAESASGPSEDP 232 GPP P PPRA RP T+ S+S + P Sbjct: 271 GPPPP-PPPPPRASSKRPATADSPKPSAKKQKKSSSKGSRSAPGTSPRTSSSSSFSDKKP 329 Query: 233 SVNFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSD 292 + + GE V A P + ++VE + S + S+ SSS S Sbjct: 330 AKDKSSTRGEKVKAESEPREAKKALEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSDS 389 Query: 293 PSKPGGN-VEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTG 351 +P N +G +S+ E ++ EE E D+ SG + ++ + +P G Sbjct: 390 DFEPSQNHSQGPLRSMVEDLQS---------EESDEDDSSSGEE------AAGKTNP--G 432 Query: 352 ELQSLQMPESEGPSSLD---PSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSD 408 L +SE +S D PS+E P K + P ++L G D Sbjct: 433 RDSRLSFSDSESDNSADSSLPSREPPPPQKPPPPNSKVSGRRSPESCSKPEKILKKGTYD 492 Query: 409 E 409 + Sbjct: 493 K 493 >gi|148762982 hypothetical protein LOC387640 [Homo sapiens] Length = 908 Score = 39.7 bits (91), Expect = 0.005 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%) Query: 273 PESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCS 332 PES S++ +SSS +D S G ++ ++ S++ + E EG EE+ E + Sbjct: 376 PESCSSDSESSSYSDHAAND-SDFGSSLSSSSNSVSSEEE----EEEGEEEEEEEEEEGG 430 Query: 333 GGDDDWTHLSSKEVDPST 350 G D + +SS+E D ST Sbjct: 431 SGASDSSEVSSEEEDSST 448 >gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens] Length = 633 Score = 39.3 bits (90), Expect = 0.007 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 103 KECRRDHRPPCAQEAPRNMVHPNVICDGCNG-PVVGTRYKCSVCPDYDLCSVCEGKGLHR 161 +E + + A E R H + C+ C P+ G YKC+ C +Y LC C H Sbjct: 209 EEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSCCHL 268 Query: 162 GHT 164 HT Sbjct: 269 SHT 271 >gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] Length = 2752 Score = 38.9 bits (89), Expect = 0.009 Identities = 42/168 (25%), Positives = 62/168 (36%), Gaps = 26/168 (15%) Query: 265 RSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALES------ 318 + R + S SSS+ SSS SS S + EG++ + ++ + S Sbjct: 2528 KERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPK 2587 Query: 319 ----EGRPEE---------QMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPS 365 EGRP E S + S + SS S+ S S S Sbjct: 2588 EAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647 Query: 366 SLDPSQEGPTGLKEAALYPHLPPEADPRL------IESLSQMLSMGFS 407 S P++ GP L + A P PP + R I+SL S+ +S Sbjct: 2648 SPSPAKPGPQALPKPA-SPKKPPPGERRSRSPRKPIDSLRDSRSLSYS 2694 Score = 30.8 bits (68), Expect = 2.6 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 6/94 (6%) Query: 217 RPGPTAESASGPSEDPSVNFL---KNVGESVAAALSPLGIE-VDIDVEHGGKRSRLTPVS 272 RP P+ E +S E P+ L ++ G A +PL E V+ E R R P S Sbjct: 349 RPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKS 408 Query: 273 PESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQS 306 PE S S P S P+K + + +S Sbjct: 409 PEKLPQSSSSESSPPS--PQPTKVSRHASSSPES 440 >gi|157364926 dystrotelin [Homo sapiens] Length = 578 Score = 38.9 bits (89), Expect = 0.009 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 111 PPCAQ-EAPRNMVHPNVICDGCNG-PVVGTRYKCSVCPDYDLCSVCEGKGLH-RGHTK 165 P C + A + HP C C P+ G RY+C C ++D+C +C GLH + H K Sbjct: 211 PTCHRLSAAERVTHP-ARCTLCRTFPITGLRYRCLKCLNFDICQMCFLSGLHSKSHQK 267 >gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] Length = 2400 Score = 38.5 bits (88), Expect = 0.012 Identities = 38/128 (29%), Positives = 48/128 (37%), Gaps = 26/128 (20%) Query: 195 WPG--WEMGPPGNWSPRPPRAG-------EARPGPTAESASGPSEDPSVNFLKNVGESVA 245 W G W PG W PRP R G +PGP E + P + GE VA Sbjct: 369 WEGYPWGFSEPGVWGPRPCRVGCREVFGRGGQPGPKYEIWTNPLH-------ASQGERVA 421 Query: 246 AALSPLGIEVDIDVE-------HGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGG 298 A G+ + G +R SP SS+ + S SSCC P P Sbjct: 422 AR-KRWGLAQHVRCSGLWGHGTAGRERCSQDSASPASSTGLPEGSEPESSCC--PRTPED 478 Query: 299 NVEGATQS 306 V+ A+ S Sbjct: 479 GVDSASPS 486 >gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo sapiens] Length = 1130 Score = 37.4 bits (85), Expect = 0.027 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 14/152 (9%) Query: 185 LRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNV---- 240 L +V+ FG G E+ +P PP A P P + P +P L V Sbjct: 957 LEEVEDLEFGTAGGEVE---EGAPPPPTLPPALPPPESPPKVQPEPEPEPGLLLEVEEPG 1013 Query: 241 -----GESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSK 295 G A L+P + +VE G+ P P EE+ S+ P+ + Sbjct: 1014 TEEERGADTAPTLAPEALPSQGEVEREGESPAAGP--PPQELVEEEPSAPPTLLEEETED 1071 Query: 296 PGGNVEGATQSLAEQMRKIALESEGRPEEQME 327 V+ ++ AE+ + E+E E++ + Sbjct: 1072 GSDKVQPPPETPAEEEMETETEAEALQEKEQD 1103 >gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] Length = 2968 Score = 37.4 bits (85), Expect = 0.027 Identities = 51/222 (22%), Positives = 76/222 (34%), Gaps = 27/222 (12%) Query: 196 PGWEMGPPGNWSPRPPRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEV 255 PG GN P+ P +A ES S S S +++ S G E Sbjct: 2531 PGLTFEDSGN--PKSPDKAQAEQDGAEESESSSSSSSG-------SSSSSSSSSSSGSET 2581 Query: 256 DIDVEH----------GGKRSRLTP---VSPESSSTEEKSSSQPSSCCSDPSKPGGNVEG 302 + + E GG+ SP SSS+ SSS SS S S + Sbjct: 2582 EGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSS 2641 Query: 303 ATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEV--DPSTGELQSLQMP- 359 ++ S + + S S + S D+D + S E P+ G +P Sbjct: 2642 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPT 2701 Query: 360 -ESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQ 400 ++ PS P G K A P PP + ++ +Q Sbjct: 2702 KATKQAGKARPSAHSP-GKKTPAPQPQAPPPQPTQPLQPKAQ 2742 >gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens] Length = 1992 Score = 37.0 bits (84), Expect = 0.036 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 10/111 (9%) Query: 271 VSPESSSTEEKSSSQPSSCCSDPSKPGGNV-EGATQSLAEQMRKIALESEGRPEEQMESD 329 ++ SS+ SSS + S PG V +G Q+ A + R + S R + E Sbjct: 193 ITDSSSAASTSSSSSAVASASSTVPPGARVKQGKDQNKARRSRSASSPSPRRSSREKEQS 252 Query: 330 NCSGGDD-DWTHLSSKEVD-PSTGELQSLQMPESEGPSSLDPSQEGPTGLK 378 G DW S +V P T L +P G S + S+ GP+GL+ Sbjct: 253 KTGGSSKFDWAARFSPKVSLPKT----KLSLP---GSSKSETSKPGPSGLQ 296 >gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sapiens] Length = 1135 Score = 36.6 bits (83), Expect = 0.047 Identities = 58/199 (29%), Positives = 82/199 (41%), Gaps = 47/199 (23%) Query: 215 EARPGPT-----AESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLT 269 EA P P A++ G SED + L++VG+S A P + V GK+ L Sbjct: 583 EATPVPIKDMEIAQTQKGISEDSHLESLQDVGQSAA----PTFMISPETVTGTGKKCSLP 638 Query: 270 PVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEEQMESD 329 + E S E+ +P C S PS+ L+ + IA EGRP Sbjct: 639 --AEEDSVLEKLGERKP--CNSQPSE-----------LSSETSGIARPEEGRPV------ 677 Query: 330 NCSGGDDDWTHLSSKEVDPS----TGELQSLQMPESE------GPSSLDPSQEGPTGL-- 377 SG +D T +KE+ PS T L + Q ++ P+SL P Q PT + Sbjct: 678 -VSGTGNDITTPPNKELPPSPEKKTKPLATTQPAKTSTSKAKTQPTSL-PKQPAPTTIGG 735 Query: 378 ---KEAALYPHLPPEADPR 393 K +L L P A P+ Sbjct: 736 LNKKPMSLASGLVPAAPPK 754 >gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sapiens] Length = 1152 Score = 36.6 bits (83), Expect = 0.047 Identities = 58/199 (29%), Positives = 82/199 (41%), Gaps = 47/199 (23%) Query: 215 EARPGPT-----AESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLT 269 EA P P A++ G SED + L++VG+S A P + V GK+ L Sbjct: 583 EATPVPIKDMEIAQTQKGISEDSHLESLQDVGQSAA----PTFMISPETVTGTGKKCSLP 638 Query: 270 PVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEEQMESD 329 + E S E+ +P C S PS+ L+ + IA EGRP Sbjct: 639 --AEEDSVLEKLGERKP--CNSQPSE-----------LSSETSGIARPEEGRPV------ 677 Query: 330 NCSGGDDDWTHLSSKEVDPS----TGELQSLQMPESE------GPSSLDPSQEGPTGL-- 377 SG +D T +KE+ PS T L + Q ++ P+SL P Q PT + Sbjct: 678 -VSGTGNDITTPPNKELPPSPEKKTKPLATTQPAKTSTSKAKTQPTSL-PKQPAPTTIGG 735 Query: 378 ---KEAALYPHLPPEADPR 393 K +L L P A P+ Sbjct: 736 LNKKPMSLASGLVPAAPPK 754 >gi|42718005 dystrobrevin alpha isoform 1 [Homo sapiens] Length = 743 Score = 36.6 bits (83), Expect = 0.047 Identities = 73/333 (21%), Positives = 121/333 (36%), Gaps = 44/333 (13%) Query: 120 NMVHPNVICDGCNGP-VVGTRYKCSVCPDYDLCSVCEGKG--------LHRGHTKLAFPS 170 N+ HP V C C+ ++G RY+C C +Y LC C +G H+ ++ S Sbjct: 236 NVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTSWKS 294 Query: 171 PFGHLSEGFSHSRWLRKVKHG-HFGWPGWEMGP------PGNWSPRPPRA--------GE 215 P L+ S S + H +P P W PRP + Sbjct: 295 PAKKLTNALSKSLSCASSREPLHPMFPDQPEKPLNLAHIVDTWPPRPVTSMNDTLFSHSV 354 Query: 216 ARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPES 275 G + S P +D V K + + A L GI+ ++V RL Sbjct: 355 PSSGSPFITRSSPPKDSEVEQNKLLARAAPAFLKGKGIQYSLNV-----ADRLADEHVLI 409 Query: 276 SSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALE-SEGRPEEQMESDNCS-- 332 + P SC + S ++ + +A ++A E S +P +Q + + S Sbjct: 410 GLYVNMLRNNP-SCMLESS---NRLDEEHRLIARYAARLAAESSSSQPPQQRSAPDISFT 465 Query: 333 -GGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDP----SQEGPTGLKEAALYPHLP 387 + L ++ + + LQ +Q E + P +Q+ PT L E L Sbjct: 466 IDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRK 525 Query: 388 PEADPRLIESLSQMLSMGFSDEGGWLTRLLQTK 420 E + R+ + EG L +LL+T+ Sbjct: 526 DELEQRMSALQESRRELMVQLEG--LMKLLKTQ 556 >gi|55741849 WD repeat domain 22 [Homo sapiens] Length = 942 Score = 36.2 bits (82), Expect = 0.061 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 18/164 (10%) Query: 218 PGPTAESASGPSEDPSVNFLKNVGESVAAALSPLG------IEVDIDVEHGGKRSRLTPV 271 P PT E A+ S ++ L+ + ALS EV++D + L P Sbjct: 499 PTPTCEDAA--SRQQRLSALRRYQDKRLLALSNESDSEENVCEVELDTD-------LFP- 548 Query: 272 SPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNC 331 P S S E++SSS SS S+ + +T R+ E +P ++ N Sbjct: 549 RPRSPSPEDESSSSSSSSSSEDEEELNERRASTWQRNAMRRRQKTTREDKPSAPIKPTNT 608 Query: 332 SGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPT 375 G+D++ + K D S+ S + S + PS+ PT Sbjct: 609 YIGEDNYDYPQIKVDDLSSSPTSSPE--RSTSTLEIQPSRASPT 650 >gi|237757310 synaptojanin 1 isoform a [Homo sapiens] Length = 1612 Score = 36.2 bits (82), Expect = 0.061 Identities = 45/206 (21%), Positives = 76/206 (36%), Gaps = 20/206 (9%) Query: 211 PRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRL-- 268 P+AG A PGP S + P+ P + A+ L E K S Sbjct: 1218 PQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLP 1277 Query: 269 TPVSPESSSTEEKSSSQPSSCCSDP----------SKPGGNVEGATQSLAEQMRKIALES 318 P+ P+++ + S P+ +P S P N+E Q +L S Sbjct: 1278 EPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSSHSLPS 1337 Query: 319 EGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLK 378 E + Q++++ S G + S ++DP +L + S+ S+ Q P Sbjct: 1338 EASSQPQVKTNGISDGKRE----SPLKIDPFE-DLSFNLLAVSKAQLSV---QTSPVPTP 1389 Query: 379 EAALYPHLPPEADPRLIESLSQMLSM 404 + LP ++ S+S M +M Sbjct: 1390 DPKRLIQLPSATQSNVLSSVSCMPTM 1415 >gi|42718003 dystrobrevin alpha isoform 3 [Homo sapiens] Length = 570 Score = 36.2 bits (82), Expect = 0.061 Identities = 40/164 (24%), Positives = 61/164 (37%), Gaps = 25/164 (15%) Query: 120 NMVHPNVICDGCNGP-VVGTRYKCSVCPDYDLCSVCEGKG--------LHRGHTKLAFPS 170 N+ HP V C C+ ++G RY+C C +Y LC C +G H+ ++ S Sbjct: 236 NVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTSWKS 294 Query: 171 PFGHLSEGFSHSRWLRKVKHG-HFGWPGWEMGP------PGNWSPRPPRA--------GE 215 P L+ S S + H +P P W PRP + Sbjct: 295 PAKKLTNALSKSLSCASSREPLHPMFPDQPEKPLNLAHIVDTWPPRPVTSMNDTLFSHSV 354 Query: 216 ARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDV 259 G + S P +D V K + + A L GI+ ++V Sbjct: 355 PSSGSPFITRSSPPKDSEVEQNKLLARAAPAFLKGKGIQYSLNV 398 >gi|104526627 triadin [Homo sapiens] Length = 729 Score = 36.2 bits (82), Expect = 0.061 Identities = 36/194 (18%), Positives = 73/194 (37%), Gaps = 12/194 (6%) Query: 210 PPRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEH-----GGK 264 P +A E + G +A ++ + A P G + + +H K Sbjct: 352 PGKASETKQGTVKIAAQAAAKKDEKKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPK 411 Query: 265 RSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEE 324 + P + + E++ + + + PG E T+++ +++RK E G+ Sbjct: 412 KEHSVPSDKQVKAKTERAKEEIGAVSIKKAVPGKKEEKTTKTVEQEIRK---EKSGKTSS 468 Query: 325 QMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYP 384 ++ G ++ S KE +P T + + + S+ + P G KE P Sbjct: 469 ILKDKEPIKGKEEKVPASLKEKEPETKKDEKM----SKAGKEVKPKPPQLQGKKEEKPEP 524 Query: 385 HLPPEADPRLIESL 398 + EA P + E + Sbjct: 525 QIKKEAKPAISEKV 538 >gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens] Length = 2524 Score = 35.8 bits (81), Expect = 0.079 Identities = 44/174 (25%), Positives = 63/174 (36%), Gaps = 17/174 (9%) Query: 228 PSEDPSVNF-------LKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEE 280 P+ DP N LK + + AAA+ P+ +V H R P P + Sbjct: 947 PTGDPRANASPQKPLDLKQLKQR-AAAIPPIVTKV-----HEPPREDAAPTKPAPPAPPP 1000 Query: 281 KSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTH 340 + QP S P +PG + G ++S A K A + P E+ G WT Sbjct: 1001 PQNLQPES--DAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTS 1058 Query: 341 LSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAA--LYPHLPPEADP 392 V P S P+ S P P GL + A + P P ++P Sbjct: 1059 GLPFPVPPREVIKASPHAPDPSAFSYAPPGHPLPLGLHDTARPVLPRPPTISNP 1112 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.132 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,701,593 Number of Sequences: 37866 Number of extensions: 1287202 Number of successful extensions: 6168 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 272 Number of HSP's that attempted gapping in prelim test: 5708 Number of HSP's gapped (non-prelim): 624 length of query: 440 length of database: 18,247,518 effective HSP length: 105 effective length of query: 335 effective length of database: 14,271,588 effective search space: 4780981980 effective search space used: 4780981980 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.