SQSTM1 13252

Name: SQSTM1	Sequence: fasta or formatted (356aa)		NCBI GI: 214830438
Description: sequestosome 1 isoform 2		Referenced in: Ubiquitin and Related Protein Modifications
Other entries for this name: alt mRNA [356aa] sequestosome 1 isoform 2 alt prot [440aa] sequestosome 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 19 3 C cysteine 3.1 11 2 D aspartate 5.6 20 3 E glutamate 8.7 31 2 F phenylalanine 2.0 7 1 G glycine 9.6 34 2 H histidine 3.4 12 1 I isoleucine 2.8 10 1 K lysine 5.1 18 2 L leucine 7.3 26 2 M methionine 2.5 9 1 N asparagine 2.5 9 1 P proline 10.4 37 3 Q glutamine 3.1 11 1 R arginine 5.1 18 2 S serine 12.1 43 3 T threonine 3.4 12 1 V valine 4.5 16 2 W tryptophan 1.7 6 1 Y tyrosine 2.0 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sequestosome 1 isoform 2 SQSTM1 1.000 sequestosome 1 isoform 2 SQSTM1 1.000 sequestosome 1 isoform 1 NBR1 0.041 neighbor of BRCA1 gene 1 NBR1 0.041 neighbor of BRCA1 gene 1 NBR1 0.041 neighbor of BRCA1 gene 1 MIB1 0.032 mindbomb homolog 1 HERC2 0.030 hect domain and RLD 2 MIB2 0.028 mindbomb homolog 2 KCMF1 0.026 potassium channel modulatory factor 1 ZZEF1 0.025 zinc finger, ZZ type with EF hand domain 1 SYNJ1 0.021 synaptojanin 1 isoform d COL5A2 0.021 alpha 2 type V collagen preproprotein MLLT1 0.021 myeloid/lymphoid or mixed-lineage leukemia (trithora... C10orf140 0.021 hypothetical protein LOC387640 ZSWIM2 0.019 zinc finger, SWIM domain containing 2 SRRM2 0.019 splicing coactivator subunit SRm300 DYTN 0.019 dystrotelin RP1L1 0.019 retinitis pigmentosa 1-like 1 PELP1 0.017 proline, glutamic acid and leucine rich protein 1 [... TNRC18 0.017 trinucleotide repeat containing 18 TRIP12 0.017 thyroid hormone receptor interactor 12 MAP4 0.017 microtubule-associated protein 4 isoform 4 MAP4 0.017 microtubule-associated protein 4 isoform 1 DTNA 0.017 dystrobrevin alpha isoform 1 DCAF5 0.015 WD repeat domain 22 SYNJ1 0.015 synaptojanin 1 isoform a DTNA 0.015 dystrobrevin alpha isoform 3 TRDN 0.015 triadin NCOR2 0.015 nuclear receptor co-repressor 2 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.