Guide to the Human Genome
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Name: SQSTM1 Sequence: fasta or formatted (356aa) NCBI GI: 214830438
Description:

sequestosome 1 isoform 2

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [356aa] sequestosome 1 isoform 2
alt prot [440aa] sequestosome 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         19           3
 C cysteine            3.1         11           2
 D aspartate           5.6         20           3
 E glutamate           8.7         31           2
 F phenylalanine       2.0          7           1
 G glycine             9.6         34           2
 H histidine           3.4         12           1
 I isoleucine          2.8         10           1
 K lysine              5.1         18           2
 L leucine             7.3         26           2
 M methionine          2.5          9           1
 N asparagine          2.5          9           1
 P proline            10.4         37           3
 Q glutamine           3.1         11           1
 R arginine            5.1         18           2
 S serine             12.1         43           3
 T threonine           3.4         12           1
 V valine              4.5         16           2
 W tryptophan          1.7          6           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sequestosome 1 isoform 2 
SQSTM1                1.000   sequestosome 1 isoform 2 
SQSTM1                1.000   sequestosome 1 isoform 1 
NBR1                  0.041   neighbor of BRCA1 gene 1 
NBR1                  0.041   neighbor of BRCA1 gene 1 
NBR1                  0.041   neighbor of BRCA1 gene 1 
MIB1                  0.032   mindbomb homolog 1 
HERC2                 0.030   hect domain and RLD 2 
MIB2                  0.028   mindbomb homolog 2 
KCMF1                 0.026   potassium channel modulatory factor 1 
ZZEF1                 0.025   zinc finger, ZZ type with EF hand domain 1 
SYNJ1                 0.021   synaptojanin 1 isoform d 
COL5A2                0.021   alpha 2 type V collagen preproprotein 
MLLT1                 0.021   myeloid/lymphoid or mixed-lineage leukemia (trithora...
C10orf140             0.021   hypothetical protein LOC387640 
ZSWIM2                0.019   zinc finger, SWIM domain containing 2 
SRRM2                 0.019   splicing coactivator subunit SRm300 
DYTN                  0.019   dystrotelin 
RP1L1                 0.019   retinitis pigmentosa 1-like 1 
PELP1                 0.017   proline, glutamic acid and leucine rich protein 1 [...
TNRC18                0.017   trinucleotide repeat containing 18 
TRIP12                0.017   thyroid hormone receptor interactor 12 
MAP4                  0.017   microtubule-associated protein 4 isoform 4 
MAP4                  0.017   microtubule-associated protein 4 isoform 1 
DTNA                  0.017   dystrobrevin alpha isoform 1 
DCAF5                 0.015   WD repeat domain 22 
SYNJ1                 0.015   synaptojanin 1 isoform a 
DTNA                  0.015   dystrobrevin alpha isoform 3 
TRDN                  0.015   triadin 
NCOR2                 0.015   nuclear receptor co-repressor 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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