Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 4505253

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505253 mutS homolog 5 isoform c [Homo sapiens]
         (834 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505253 mutS homolog 5 isoform c [Homo sapiens]                   1648   0.0  
gi|26638666 mutS homolog 5 isoform c [Homo sapiens]                  1648   0.0  
gi|26638664 mutS homolog 5 isoform b [Homo sapiens]                  1643   0.0  
gi|26638662 mutS homolog 5 isoform a [Homo sapiens]                  1637   0.0  
gi|68303635 mutS homolog 3 [Homo sapiens]                             181   2e-45
gi|4557761 mutS homolog 2 [Homo sapiens]                              150   6e-36
gi|36949366 mutS homolog 4 [Homo sapiens]                             143   7e-34
gi|4504191 mutS homolog 6 [Homo sapiens]                              142   1e-33
gi|166795264 AE binding protein 2 isoform b [Homo sapiens]             36   0.13 
gi|166795262 AE binding protein 2 isoform a [Homo sapiens]             36   0.13 
gi|112789532 poliovirus receptor related 2 isoform delta precurs...    33   0.84 
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    33   1.1  
gi|21735548 centrosomal protein 2 [Homo sapiens]                       33   1.1  
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    33   1.1  
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         32   1.9  
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ...    32   1.9  
gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ...    32   1.9  
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]     32   2.4  
gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f...    32   2.4  
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]    32   2.4  
gi|110349786 Alstrom syndrome 1 [Homo sapiens]                         32   3.2  
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [...    32   3.2  
gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]            32   3.2  
gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]      32   3.2  
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]    32   3.2  
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]    32   3.2  
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]    32   3.2  
gi|7019333 nuclear receptor binding protein [Homo sapiens]             32   3.2  
gi|4557415 cystathionine-beta-synthase [Homo sapiens]                  31   5.4  
gi|116517292 cut-like 2 [Homo sapiens]                                 31   5.4  

>gi|4505253 mutS homolog 5 isoform c [Homo sapiens]
          Length = 834

 Score = 1648 bits (4267), Expect = 0.0
 Identities = 834/834 (100%), Positives = 834/834 (100%)

Query: 1   MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
           MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY
Sbjct: 1   MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60

Query: 61  LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
           LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ
Sbjct: 61  LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120

Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
           EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180

Query: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240
           RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS
Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240

Query: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300
           VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL
Sbjct: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300

Query: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360
           DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF
Sbjct: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360

Query: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420
           RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV
Sbjct: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420

Query: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480
           ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS
Sbjct: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480

Query: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540
           ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR
Sbjct: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540

Query: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600
           DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI
Sbjct: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600

Query: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660
           YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN
Sbjct: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660

Query: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720
           NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ
Sbjct: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720

Query: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780
           GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS
Sbjct: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780

Query: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834
           GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL
Sbjct: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834


>gi|26638666 mutS homolog 5 isoform c [Homo sapiens]
          Length = 834

 Score = 1648 bits (4267), Expect = 0.0
 Identities = 834/834 (100%), Positives = 834/834 (100%)

Query: 1   MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
           MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY
Sbjct: 1   MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60

Query: 61  LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
           LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ
Sbjct: 61  LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120

Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
           EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180

Query: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240
           RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS
Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240

Query: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300
           VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL
Sbjct: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300

Query: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360
           DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF
Sbjct: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360

Query: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420
           RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV
Sbjct: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420

Query: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480
           ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS
Sbjct: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480

Query: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540
           ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR
Sbjct: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540

Query: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600
           DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI
Sbjct: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600

Query: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660
           YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN
Sbjct: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660

Query: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720
           NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ
Sbjct: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720

Query: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780
           GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS
Sbjct: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780

Query: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834
           GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL
Sbjct: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834


>gi|26638664 mutS homolog 5 isoform b [Homo sapiens]
          Length = 835

 Score = 1643 bits (4255), Expect = 0.0
 Identities = 834/835 (99%), Positives = 834/835 (99%), Gaps = 1/835 (0%)

Query: 1   MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
           MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY
Sbjct: 1   MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60

Query: 61  LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
           LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ
Sbjct: 61  LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120

Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
           EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180

Query: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240
           RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS
Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240

Query: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300
           VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL
Sbjct: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300

Query: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360
           DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF
Sbjct: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360

Query: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420
           RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV
Sbjct: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420

Query: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480
           ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS
Sbjct: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480

Query: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540
           ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR
Sbjct: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540

Query: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600
           DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI
Sbjct: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600

Query: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLN-QVAKAV 659
           YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLN QVAKAV
Sbjct: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAV 660

Query: 660 NNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLP 719
           NNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLP
Sbjct: 661 NNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLP 720

Query: 720 QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR 779
           QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR
Sbjct: 721 QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR 780

Query: 780 SGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834
           SGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL
Sbjct: 781 SGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 835


>gi|26638662 mutS homolog 5 isoform a [Homo sapiens]
          Length = 851

 Score = 1637 bits (4239), Expect = 0.0
 Identities = 834/851 (98%), Positives = 834/851 (98%), Gaps = 17/851 (1%)

Query: 1   MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
           MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY
Sbjct: 1   MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60

Query: 61  LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
           LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ
Sbjct: 61  LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120

Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLT- 179
           EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLT 
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTP 180

Query: 180 ----------------VRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNID 223
                           VRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNID
Sbjct: 181 PGDLRFTPIPLLIPSQVRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNID 240

Query: 224 QDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGE 283
           QDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGE
Sbjct: 241 QDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGE 300

Query: 284 LSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA 343
           LSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA
Sbjct: 301 LSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA 360

Query: 344 LGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEI 403
           LGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEI
Sbjct: 361 LGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEI 420

Query: 404 DEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEI 463
           DEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEI
Sbjct: 421 DEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEI 480

Query: 464 NGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL 523
           NGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL
Sbjct: 481 NGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL 540

Query: 524 DLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGD 583
           DLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGD
Sbjct: 541 DLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGD 600

Query: 584 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISL 643
           KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISL
Sbjct: 601 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISL 660

Query: 644 GLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 703
           GLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI
Sbjct: 661 GLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 720

Query: 704 FVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL 763
           FVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL
Sbjct: 721 FVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL 780

Query: 764 PDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMS 823
           PDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMS
Sbjct: 781 PDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMS 840

Query: 824 QEVLPAATSIL 834
           QEVLPAATSIL
Sbjct: 841 QEVLPAATSIL 851


>gi|68303635 mutS homolog 3 [Homo sapiens]
          Length = 1137

 Score =  181 bits (459), Expect = 2e-45
 Identities = 166/604 (27%), Positives = 291/604 (48%), Gaps = 65/604 (10%)

Query: 253  SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGH 312
            SL  +L+     +G + L+ W T+P   L E+++RLD +   L  ++    Q+ +    H
Sbjct: 559  SLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN----H 614

Query: 313  IKNVPLILKRM-KLSHTKVS--DWQVLYKTVYSALG----LRDACRSLPQSIQLFRDIAQ 365
            ++ +P I + +  + H K S  ++ ++ KT+Y        +  A  S  QS  L R +  
Sbjct: 615  LRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQS-DLLRTVIL 673

Query: 366  EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNID--PEIDEKKRRLMGLPSFLTEVARK 423
            E  + L  +   + K+++ + +   ++  +  ++   P I ++K  + G+     +  R 
Sbjct: 674  EIPELLSPVEHYL-KILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGV----IDEIRM 728

Query: 424  ELENLDSRIPSCSVIYIPLIG--FLLSIPRLPSMVEASDF-------EINGLDFMFLSEE 474
             L+ +   + + S  Y+ + G  F++ I         +D+        ++     F+ E 
Sbjct: 729  HLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVEN 788

Query: 475  KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLA 534
              H    R + +      L C     + L  +      L +A     V  LA+ +D + +
Sbjct: 789  YRHLNQLREQLV------LDCSAEWLDFLEKFSEHYHSLCKA-----VHHLAT-VDCIFS 836

Query: 535  LASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCART---FVPNSTECGGDKGRVKVIT 591
            LA  A+   Y RP    +   + I+NGRHP++++       +VPN+T+   D  RV +IT
Sbjct: 837  LAKVAKQGDYCRPTVQEE-RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIIT 895

Query: 592  GPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMID 651
            GPN  GKS Y+KQV LIT MA +GS+VPAEEA IG VD IFTR+ + ++I  G STFM +
Sbjct: 896  GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEE 955

Query: 652  LNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLS 711
            L   A+ +  AT+QSLV++DE G+GT+T DG+A+  A L +++ R      +FV T++  
Sbjct: 956  LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFV-THYPP 1013

Query: 712  LVQLQLLPQGPLVQY-LTMETCEDGNDL------------VFFYQVCEGVAKASHASHTA 758
            + +L+      +  Y +     ED + L             F YQ+  G+A  S+  + A
Sbjct: 1014 VCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVA 1073

Query: 759  AQAGLPDKLVA----RGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP 814
              A +P +++     + KE+  LI + +  K +K   K   M N Q L     + ++E+ 
Sbjct: 1074 KLADVPGEILKKAAHKSKELEGLINTKR--KRLKYFAKLWTMHNAQDLQKWTEEFNMEET 1131

Query: 815  NLDL 818
               L
Sbjct: 1132 QTSL 1135


>gi|4557761 mutS homolog 2 [Homo sapiens]
          Length = 934

 Score =  150 bits (378), Expect = 6e-36
 Identities = 132/536 (24%), Positives = 233/536 (43%), Gaps = 29/536 (5%)

Query: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHR-LLG 311
           SL  +LN+C    G++L+  W  +P  D   +  RL++++ F+  ++ ++ Q L   LL 
Sbjct: 325 SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFV--EDAELRQTLQEDLLR 382

Query: 312 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQ-----LFRDIAQE 366
              ++  + K+ +     + D   LY+ +     +  A        Q     +F     +
Sbjct: 383 RFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTD 442

Query: 367 FSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLP----SFLTEVAR 422
              D      +I   +D +  +  + F V P+ DP + E +  +  L     S L   AR
Sbjct: 443 LRSDFSKFQEMIETTLDMD-QVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAAR 501

Query: 423 KELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSAR 482
               +   +I   S       G+   +      V  ++   + +D   + +  + + +++
Sbjct: 502 DLGLDPGKQIKLDSSAQF---GYYFRVTCKEEKVLRNNKNFSTVD---IQKNGVKFTNSK 555

Query: 483 TKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALA--SAAR 540
              L+        E  + +  ++ ++          +  + D+ ++LD +++ A  S   
Sbjct: 556 LTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGA 615

Query: 541 DYGYSRPRYSPQVLG-VRIQNGRHPLMELCAR-TFVPNSTECGGDKGRVKVITGPNSSGK 598
              Y RP    +  G + ++  RH  +E+     F+PN      DK    +ITGPN  GK
Sbjct: 616 PVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGK 675

Query: 599 SIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKA 658
           S Y++Q G+I  MA +G FVP E AE+  VD I  R+ + +S   G+STFM ++ + A  
Sbjct: 676 STYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASI 735

Query: 659 VNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLAR-GPTCPHIFVATNFLSLVQLQL 717
           + +AT  SL++IDE G+GT+T DG  L  A+  +   + G  C     AT+F  L    L
Sbjct: 736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC---MFATHFHELT--AL 790

Query: 718 LPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKE 773
             Q P V  L +        L   YQV +GV   S   H A  A  P  ++   K+
Sbjct: 791 ANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQ 846


>gi|36949366 mutS homolog 4 [Homo sapiens]
          Length = 936

 Score =  143 bits (360), Expect = 7e-34
 Identities = 144/558 (25%), Positives = 260/558 (46%), Gaps = 55/558 (9%)

Query: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL--DMAQMLHRLL 310
           +LFG+LN      G + LR     P  D+  ++ RLD +Q  L  + L   +  ++ R L
Sbjct: 334 TLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFL 393

Query: 311 GHIKNVPLILKRMK-----LSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQ 365
              + + ++++  K      + +K+++   L  T+     L+ A ++   +  L R    
Sbjct: 394 DTEQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVDPLKIAMKNC--NTPLLRAYYG 451

Query: 366 EFSDD-----LHHIASLIGKVVDF-EGSL---AENRFTVLPNIDPEIDEKKRRLM----G 412
              D      L  I ++I     + +G L    +  + V  NI+  +D  +R        
Sbjct: 452 SLEDKRFGIILEKIKTVINDDARYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDD 511

Query: 413 LPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIP--RLPSMVEASDFEINGLDFMF 470
           +   ++++  K    L +   S    +I +    +++P  +LPS            +F+ 
Sbjct: 512 IAGMISQLGEKYSLPLRTSFSSARGFFIQMTTDCIALPSDQLPS------------EFIK 559

Query: 471 LSEEKLHYR--SARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASR 528
           +S+ K  Y   SA   +++    +   EI     +++ +L  ++      L ++ D  S 
Sbjct: 560 ISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSM 619

Query: 529 LDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRV 587
           LD+LL+ A A     Y RP ++  +    I+ G HP++E + A   + N+T    +    
Sbjct: 620 LDMLLSFAHACTLSDYVRPEFTDTLA---IKQGWHPILEKISAEKPIANNTYVT-EGSNF 675

Query: 588 KVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLST 647
            +ITGPN SGKS YLKQ+ L   MA +GS+VPAE +       IFTRI + + I    ST
Sbjct: 676 LIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSST 735

Query: 648 FMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVAT 707
           FM ++ ++A  ++NA  +SL+LIDE G+GTNT +G+ +  AV  + L+          AT
Sbjct: 736 FMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLS---LKAFTLFAT 792

Query: 708 NFLSLVQLQLLPQGPLVQYLTME------TCEDGNDLVFFYQVCEGVAKASHASHTAAQ- 760
           +FL L  +  L   P V+ +  E      T  +   +++ Y++ +G+ +  +    AA+ 
Sbjct: 793 HFLELCHIDAL--YPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEV 850

Query: 761 AGLPDKLVARGKEVSDLI 778
           + LP  +V   KE++  I
Sbjct: 851 SSLPPSIVLDAKEITTQI 868


>gi|4504191 mutS homolog 6 [Homo sapiens]
          Length = 1360

 Score =  142 bits (359), Expect = 1e-33
 Identities = 176/669 (26%), Positives = 294/669 (43%), Gaps = 106/669 (15%)

Query: 178  LTVRALGGLLKFLGRRRIGVEL------EDY------NVSVPILGFKKFMLTHLVNIDQD 225
            L + ALGG + +L +  I  EL      E+Y       VS    G         + +D  
Sbjct: 679  LALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAV 738

Query: 226  TYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELS 285
            T + L+IF + ++        G  EG +L   ++ CH  +G++LL+ W   P  +   ++
Sbjct: 739  TLNNLEIFLNGTN--------GSTEG-TLLERVDTCHTPFGKRLLKQWLCAPLCNHYAIN 789

Query: 286  SRLDVIQ-FFLLPQNL-DMAQML------HRLLGHIKNVPLILKRMKLSHTKVSDWQVLY 337
             RLD I+   ++P  + ++ ++L       RLL  I NV   LK      ++   ++   
Sbjct: 790  DRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYE--- 846

Query: 338  KTVYSALGLRDACRSLP------QSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAEN 391
            +T YS   + D   +L       + I +  ++A  F       + ++ +V+  +    E 
Sbjct: 847  ETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFK------SKILKQVISLQTKNPEG 900

Query: 392  RF----TVLPNIDPEIDEKKRRLMGL-----------PSFLTEVARKE------LENLDS 430
            RF      L   D   D +K R  GL              L ++   E      LE   +
Sbjct: 901  RFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRN 960

Query: 431  RIPSCSVIY--IPLIGFLLSIPRLPSMVEASDFEINGLDFMF-LSEEKLHYRSARTKELD 487
            RI   +++Y  I    + L IP         +F    L   + L   K   +   TK ++
Sbjct: 961  RIGCRTIVYWGIGRNRYQLEIPE--------NFTTRNLPEEYELKSTKKGCKRYWTKTIE 1012

Query: 488  ALLGDL-HCEIRDQETL--LMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGY 544
              L +L + E R   +L   M +L              ++  + LDVLL LA+ +R  G 
Sbjct: 1013 KKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSR--GG 1070

Query: 545  SRPRYSPQVL-------GVRIQNGRHPLME--LCARTFVPNSTECGGD-------KGRVK 588
              P   P +L        + ++  RHP +        F+PN    G +       K    
Sbjct: 1071 DGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCV 1130

Query: 589  VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 648
            ++TGPN  GKS  ++Q GL+  MA +G +VPAE   +  +D +FTR+ + + I  G STF
Sbjct: 1131 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1190

Query: 649  MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATN 708
             ++L++ A  + +ATA SLVL+DE G+GT T DG A+  AV++  LA    C  +F +T+
Sbjct: 1191 FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE-LAETIKCRTLF-STH 1248

Query: 709  FLSLV----QLQLLPQGPLVQYLTMETCEDGND--LVFFYQVCEGVAKASHASHTAAQAG 762
            + SLV    Q   +  G +   +  E CED +   + F Y+  +G    S+  + A  A 
Sbjct: 1249 YHSLVEDYSQNVAVRLGHMACMVENE-CEDPSQETITFLYKFIKGACPKSYGFNAARLAN 1307

Query: 763  LPDKLVARG 771
            LP++++ +G
Sbjct: 1308 LPEEVIQKG 1316


>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
          Length = 517

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 1  MASLGANPRRTPQGP-RPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSG 59
          MA L    R +P  P  PG+A+ G   P     P E EEEE EEEE  AE    +L N G
Sbjct: 8  MADLEELSRLSPLPPGSPGSAARGRAEP-----PEEEEEEEEEEEEAEAEAVAALLLNGG 62


>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
          Length = 503

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 1  MASLGANPRRTPQGP-RPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSG 59
          MA L    R +P  P  PG+A+ G   P     P E EEEE EEEE  AE    +L N G
Sbjct: 8  MADLEELSRLSPLPPGSPGSAARGRAEP-----PEEEEEEEEEEEEAEAEAVAALLLNGG 62


>gi|112789532 poliovirus receptor related 2 isoform delta precursor
           [Homo sapiens]
          Length = 538

 Score = 33.5 bits (75), Expect = 0.84
 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 14/66 (21%)

Query: 14  GP-RPGAASSGFPSPAPVPGP-------REAEEEEVEEEEELAEIHLCVLWNSGYLGIAY 65
           GP  PGA S G P P P PGP        + E+EE EEEEE  +       N  Y  ++Y
Sbjct: 465 GPLHPGATSLGSPIPVP-PGPPAVEDVSLDLEDEEGEEEEEYLD-----KINPIYDALSY 518

Query: 66  YDTSDS 71
              SDS
Sbjct: 519 SSPSDS 524


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 15/24 (62%), Positives = 15/24 (62%)

Query: 9   RRTPQGPRPGAASSGFPSPAPVPG 32
           RR P GP P AAS G P PA  PG
Sbjct: 759 RRPPPGPAPAAASPGPPPPASPPG 782


>gi|21735548 centrosomal protein 2 [Homo sapiens]
          Length = 2442

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 473  EEKLHYRSARTKELDALLGDLHCEIRDQE-TLLMYQLQCQVLARA-AVLTRVL 523
            EE+L     R + L+ +LGDL  E R+QE  LL  Q QC   A+   V TR L
Sbjct: 1872 EEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQEHEVETRAL 1924


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 5    GANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEE 46
            G  PRR P       A+ G    A  PGP E + E+ +E+EE
Sbjct: 1274 GPGPRRPPWEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEE 1315



 Score = 31.6 bits (70), Expect = 3.2
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 8   PRRTPQGPRPGAASSG-FPSPAPVPGPRE 35
           PR  P+ P PGA      P P P+PGPRE
Sbjct: 850 PRAPPEPPDPGAPRPPPDPGPLPLPGPRE 878


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 12  PQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGYLGIAYYDTSDS 71
           P G  P ++S+G PSP       E EEEE E+EEE   +   +   S  L   Y D S S
Sbjct: 253 PTGSNP-SSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAGIYDDNSLS 311

Query: 72  TIHFMPDAPDHES 84
                 D P  ES
Sbjct: 312 -----QDFPGDES 319


>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
           sapiens]
          Length = 788

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 579 ECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDA 630
           + GGD+   KV+T  N +GK++  + VG     A     V  E AE  AV+A
Sbjct: 308 DVGGDEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPEVTTEAAEASAVEA 359


>gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo
           sapiens]
          Length = 790

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 579 ECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDA 630
           + GGD+   KV+T  N +GK++  + VG     A     V  E AE  AV+A
Sbjct: 310 DVGGDEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPEVTTEAAEASAVEA 361


>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
          Length = 725

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 2   ASLGANPRRTPQGPRPGAASSGFPSPAPVPGP 33
           A+ G+ P +   G  P +A+SG  SPAP  GP
Sbjct: 78  AAAGSAPSQAGPGSAPSSAASGASSPAPASGP 109


>gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f
          [Homo sapiens]
          Length = 194

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 16 RPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHL 52
          +P AA++  P+PAP P P  A  +  EE+ +L+ I +
Sbjct: 9  KPVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKI 45


>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
          Length = 935

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 2   ASLGANPRRTPQGPRPGAASSGFPSPAPVPGP 33
           A+ G+ P +   G  P +A+SG  SPAP  GP
Sbjct: 78  AAAGSAPSQAGPGSAPSSAASGASSPAPASGP 109


>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
          Length = 4169

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 25  PSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES 84
           P   P PG  E EEEE EEEEE  E        +    +   +  +       D+  H  
Sbjct: 3   PEDLPWPGELEEEEEEEEEEEEEEEEEAAAAAAANVDDVVVVEEVEEEAGRELDSDSHYG 62

Query: 85  LKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQEHREPKRPEIIFLPSVDFGLEISK 144
            + L+ + DE + ++    A    +  R L  L+  +HR  +         V     + +
Sbjct: 63  PQHLESIDDEEDEEA---KAWLQAHPGRILPPLSPPQHRYSEGERTSLEKIVPLTCHVWQ 119

Query: 145 QRLLSGN 151
           Q +  GN
Sbjct: 120 QIVYQGN 126


>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
           [Homo sapiens]
          Length = 471

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 8   PRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEE 46
           PR  P+GPR GAA+       P   PRE EEEE E+E +
Sbjct: 75  PRGPPEGPR-GAAAPEEEDEEP-GDPREGEEEEEEDEPD 111


>gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 281

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 2  ASLGANPRRTPQGPRPGAASSGFPS 26
          A  G +PRR+P  PRPG  + GFP+
Sbjct: 23 AKPGVSPRRSPALPRPGFPAPGFPA 47


>gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]
          Length = 471

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 8   PRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEE 46
           PR  P+GPR GAA+       P   PRE EEEE E+E +
Sbjct: 75  PRGPPEGPR-GAAAPEEEDEEP-GDPREGEEEEEEDEPD 111


>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo
          sapiens]
          Length = 170

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 2  ASLGANPRRTPQGPRPGAASSGFPSP----APVPGPREAEEEEVEEEEELAEI 50
          A+    P R P  P P A ++G P+P    AP P    A  EE  E   L E+
Sbjct: 31 AAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGEL 83


>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo
          sapiens]
          Length = 177

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 2  ASLGANPRRTPQGPRPGAASSGFPSP----APVPGPREAEEEEVEEEEELAEI 50
          A+    P R P  P P A ++G P+P    AP P    A  EE  E   L E+
Sbjct: 31 AAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGEL 83


>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo
          sapiens]
          Length = 204

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 2  ASLGANPRRTPQGPRPGAASSGFPSP----APVPGPREAEEEEVEEEEELAEI 50
          A+    P R P  P P A ++G P+P    AP P    A  EE  E   L E+
Sbjct: 31 AAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGEL 83


>gi|7019333 nuclear receptor binding protein [Homo sapiens]
          Length = 535

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 3  SLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLW 56
          S G++P+       PG  S   P  +        EEEE E+E E+ E   C  W
Sbjct: 11 SSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESPCGRW 64


>gi|4557415 cystathionine-beta-synthase [Homo sapiens]
          Length = 551

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 411 MGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMF 470
           +G    +T +ARK    L  + P C +I +   G +L+ P   +  E + +E+ G+ + F
Sbjct: 255 VGTGGTITGIARK----LKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDF 310

Query: 471 L 471
           +
Sbjct: 311 I 311


>gi|116517292 cut-like 2 [Homo sapiens]
          Length = 1486

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 19/49 (38%), Positives = 21/49 (42%)

Query: 2   ASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEI 50
           A  GA P   P  P PG    G P PA   G   A     EE+ + AEI
Sbjct: 510 AFYGAKPPTAPATPAPGPEPLGGPEPADGGGGGAAGPGAEEEQLDTAEI 558


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,008,821
Number of Sequences: 37866
Number of extensions: 1440458
Number of successful extensions: 9684
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 9408
Number of HSP's gapped (non-prelim): 220
length of query: 834
length of database: 18,247,518
effective HSP length: 111
effective length of query: 723
effective length of database: 14,044,392
effective search space: 10154095416
effective search space used: 10154095416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press