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Search of human proteins with 4505253
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505253 mutS homolog 5 isoform c [Homo sapiens]
(834 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505253 mutS homolog 5 isoform c [Homo sapiens] 1648 0.0
gi|26638666 mutS homolog 5 isoform c [Homo sapiens] 1648 0.0
gi|26638664 mutS homolog 5 isoform b [Homo sapiens] 1643 0.0
gi|26638662 mutS homolog 5 isoform a [Homo sapiens] 1637 0.0
gi|68303635 mutS homolog 3 [Homo sapiens] 181 2e-45
gi|4557761 mutS homolog 2 [Homo sapiens] 150 6e-36
gi|36949366 mutS homolog 4 [Homo sapiens] 143 7e-34
gi|4504191 mutS homolog 6 [Homo sapiens] 142 1e-33
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 36 0.13
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 36 0.13
gi|112789532 poliovirus receptor related 2 isoform delta precurs... 33 0.84
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 1.1
gi|21735548 centrosomal protein 2 [Homo sapiens] 33 1.1
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 33 1.1
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 32 1.9
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ... 32 1.9
gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ... 32 1.9
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 32 2.4
gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f... 32 2.4
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 32 2.4
gi|110349786 Alstrom syndrome 1 [Homo sapiens] 32 3.2
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... 32 3.2
gi|169173306 PREDICTED: hypothetical protein [Homo sapiens] 32 3.2
gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens] 32 3.2
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 32 3.2
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 32 3.2
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 32 3.2
gi|7019333 nuclear receptor binding protein [Homo sapiens] 32 3.2
gi|4557415 cystathionine-beta-synthase [Homo sapiens] 31 5.4
gi|116517292 cut-like 2 [Homo sapiens] 31 5.4
>gi|4505253 mutS homolog 5 isoform c [Homo sapiens]
Length = 834
Score = 1648 bits (4267), Expect = 0.0
Identities = 834/834 (100%), Positives = 834/834 (100%)
Query: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY
Sbjct: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
Query: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ
Sbjct: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
Query: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240
RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS
Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240
Query: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300
VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL
Sbjct: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300
Query: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360
DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF
Sbjct: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360
Query: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420
RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV
Sbjct: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420
Query: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480
ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS
Sbjct: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480
Query: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540
ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR
Sbjct: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540
Query: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600
DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI
Sbjct: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600
Query: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660
YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN
Sbjct: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660
Query: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720
NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ
Sbjct: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720
Query: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780
GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS
Sbjct: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780
Query: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834
GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL
Sbjct: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834
>gi|26638666 mutS homolog 5 isoform c [Homo sapiens]
Length = 834
Score = 1648 bits (4267), Expect = 0.0
Identities = 834/834 (100%), Positives = 834/834 (100%)
Query: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY
Sbjct: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
Query: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ
Sbjct: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
Query: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240
RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS
Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240
Query: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300
VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL
Sbjct: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300
Query: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360
DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF
Sbjct: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360
Query: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420
RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV
Sbjct: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420
Query: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480
ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS
Sbjct: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480
Query: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540
ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR
Sbjct: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540
Query: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600
DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI
Sbjct: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600
Query: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660
YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN
Sbjct: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN 660
Query: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720
NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ
Sbjct: 661 NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ 720
Query: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780
GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS
Sbjct: 721 GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780
Query: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834
GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL
Sbjct: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834
>gi|26638664 mutS homolog 5 isoform b [Homo sapiens]
Length = 835
Score = 1643 bits (4255), Expect = 0.0
Identities = 834/835 (99%), Positives = 834/835 (99%), Gaps = 1/835 (0%)
Query: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY
Sbjct: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
Query: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ
Sbjct: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
Query: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240
RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS
Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS 240
Query: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300
VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL
Sbjct: 241 VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL 300
Query: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360
DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF
Sbjct: 301 DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF 360
Query: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420
RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV
Sbjct: 361 RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV 420
Query: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480
ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS
Sbjct: 421 ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS 480
Query: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540
ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR
Sbjct: 481 ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR 540
Query: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600
DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI
Sbjct: 541 DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI 600
Query: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLN-QVAKAV 659
YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLN QVAKAV
Sbjct: 601 YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAV 660
Query: 660 NNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLP 719
NNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLP
Sbjct: 661 NNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLP 720
Query: 720 QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR 779
QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR
Sbjct: 721 QGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIR 780
Query: 780 SGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 834
SGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL
Sbjct: 781 SGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 835
>gi|26638662 mutS homolog 5 isoform a [Homo sapiens]
Length = 851
Score = 1637 bits (4239), Expect = 0.0
Identities = 834/851 (98%), Positives = 834/851 (98%), Gaps = 17/851 (1%)
Query: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY
Sbjct: 1 MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY 60
Query: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ
Sbjct: 61 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ 120
Query: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLT- 179
EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLT
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTP 180
Query: 180 ----------------VRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNID 223
VRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNID
Sbjct: 181 PGDLRFTPIPLLIPSQVRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNID 240
Query: 224 QDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGE 283
QDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGE
Sbjct: 241 QDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGE 300
Query: 284 LSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA 343
LSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA
Sbjct: 301 LSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA 360
Query: 344 LGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEI 403
LGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEI
Sbjct: 361 LGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEI 420
Query: 404 DEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEI 463
DEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEI
Sbjct: 421 DEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEI 480
Query: 464 NGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL 523
NGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL
Sbjct: 481 NGLDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVL 540
Query: 524 DLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGD 583
DLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGD
Sbjct: 541 DLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGD 600
Query: 584 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISL 643
KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISL
Sbjct: 601 KGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISL 660
Query: 644 GLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 703
GLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI
Sbjct: 661 GLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 720
Query: 704 FVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL 763
FVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL
Sbjct: 721 FVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL 780
Query: 764 PDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMS 823
PDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMS
Sbjct: 781 PDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMS 840
Query: 824 QEVLPAATSIL 834
QEVLPAATSIL
Sbjct: 841 QEVLPAATSIL 851
>gi|68303635 mutS homolog 3 [Homo sapiens]
Length = 1137
Score = 181 bits (459), Expect = 2e-45
Identities = 166/604 (27%), Positives = 291/604 (48%), Gaps = 65/604 (10%)
Query: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGH 312
SL +L+ +G + L+ W T+P L E+++RLD + L ++ Q+ + H
Sbjct: 559 SLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN----H 614
Query: 313 IKNVPLILKRM-KLSHTKVS--DWQVLYKTVYSALG----LRDACRSLPQSIQLFRDIAQ 365
++ +P I + + + H K S ++ ++ KT+Y + A S QS L R +
Sbjct: 615 LRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQS-DLLRTVIL 673
Query: 366 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNID--PEIDEKKRRLMGLPSFLTEVARK 423
E + L + + K+++ + + ++ + ++ P I ++K + G+ + R
Sbjct: 674 EIPELLSPVEHYL-KILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGV----IDEIRM 728
Query: 424 ELENLDSRIPSCSVIYIPLIG--FLLSIPRLPSMVEASDF-------EINGLDFMFLSEE 474
L+ + + + S Y+ + G F++ I +D+ ++ F+ E
Sbjct: 729 HLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVEN 788
Query: 475 KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLA 534
H R + + L C + L + L +A V LA+ +D + +
Sbjct: 789 YRHLNQLREQLV------LDCSAEWLDFLEKFSEHYHSLCKA-----VHHLAT-VDCIFS 836
Query: 535 LASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCART---FVPNSTECGGDKGRVKVIT 591
LA A+ Y RP + + I+NGRHP++++ +VPN+T+ D RV +IT
Sbjct: 837 LAKVAKQGDYCRPTVQEE-RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIIT 895
Query: 592 GPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMID 651
GPN GKS Y+KQV LIT MA +GS+VPAEEA IG VD IFTR+ + ++I G STFM +
Sbjct: 896 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEE 955
Query: 652 LNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLS 711
L A+ + AT+QSLV++DE G+GT+T DG+A+ A L +++ R +FV T++
Sbjct: 956 LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFV-THYPP 1013
Query: 712 LVQLQLLPQGPLVQY-LTMETCEDGNDL------------VFFYQVCEGVAKASHASHTA 758
+ +L+ + Y + ED + L F YQ+ G+A S+ + A
Sbjct: 1014 VCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVA 1073
Query: 759 AQAGLPDKLVA----RGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP 814
A +P +++ + KE+ LI + + K +K K M N Q L + ++E+
Sbjct: 1074 KLADVPGEILKKAAHKSKELEGLINTKR--KRLKYFAKLWTMHNAQDLQKWTEEFNMEET 1131
Query: 815 NLDL 818
L
Sbjct: 1132 QTSL 1135
>gi|4557761 mutS homolog 2 [Homo sapiens]
Length = 934
Score = 150 bits (378), Expect = 6e-36
Identities = 132/536 (24%), Positives = 233/536 (43%), Gaps = 29/536 (5%)
Query: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHR-LLG 311
SL +LN+C G++L+ W +P D + RL++++ F+ ++ ++ Q L LL
Sbjct: 325 SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFV--EDAELRQTLQEDLLR 382
Query: 312 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQ-----LFRDIAQE 366
++ + K+ + + D LY+ + + A Q +F +
Sbjct: 383 RFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTD 442
Query: 367 FSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLP----SFLTEVAR 422
D +I +D + + + F V P+ DP + E + + L S L AR
Sbjct: 443 LRSDFSKFQEMIETTLDMD-QVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAAR 501
Query: 423 KELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSAR 482
+ +I S G+ + V ++ + +D + + + + +++
Sbjct: 502 DLGLDPGKQIKLDSSAQF---GYYFRVTCKEEKVLRNNKNFSTVD---IQKNGVKFTNSK 555
Query: 483 TKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALA--SAAR 540
L+ E + + ++ ++ + + D+ ++LD +++ A S
Sbjct: 556 LTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGA 615
Query: 541 DYGYSRPRYSPQVLG-VRIQNGRHPLMELCAR-TFVPNSTECGGDKGRVKVITGPNSSGK 598
Y RP + G + ++ RH +E+ F+PN DK +ITGPN GK
Sbjct: 616 PVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGK 675
Query: 599 SIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKA 658
S Y++Q G+I MA +G FVP E AE+ VD I R+ + +S G+STFM ++ + A
Sbjct: 676 STYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASI 735
Query: 659 VNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLAR-GPTCPHIFVATNFLSLVQLQL 717
+ +AT SL++IDE G+GT+T DG L A+ + + G C AT+F L L
Sbjct: 736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC---MFATHFHELT--AL 790
Query: 718 LPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKE 773
Q P V L + L YQV +GV S H A A P ++ K+
Sbjct: 791 ANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQ 846
>gi|36949366 mutS homolog 4 [Homo sapiens]
Length = 936
Score = 143 bits (360), Expect = 7e-34
Identities = 144/558 (25%), Positives = 260/558 (46%), Gaps = 55/558 (9%)
Query: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL--DMAQMLHRLL 310
+LFG+LN G + LR P D+ ++ RLD +Q L + L + ++ R L
Sbjct: 334 TLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFL 393
Query: 311 GHIKNVPLILKRMK-----LSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQ 365
+ + ++++ K + +K+++ L T+ L+ A ++ + L R
Sbjct: 394 DTEQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVDPLKIAMKNC--NTPLLRAYYG 451
Query: 366 EFSDD-----LHHIASLIGKVVDF-EGSL---AENRFTVLPNIDPEIDEKKRRLM----G 412
D L I ++I + +G L + + V NI+ +D +R
Sbjct: 452 SLEDKRFGIILEKIKTVINDDARYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDD 511
Query: 413 LPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIP--RLPSMVEASDFEINGLDFMF 470
+ ++++ K L + S +I + +++P +LPS +F+
Sbjct: 512 IAGMISQLGEKYSLPLRTSFSSARGFFIQMTTDCIALPSDQLPS------------EFIK 559
Query: 471 LSEEKLHYR--SARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASR 528
+S+ K Y SA +++ + EI +++ +L ++ L ++ D S
Sbjct: 560 ISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSM 619
Query: 529 LDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRV 587
LD+LL+ A A Y RP ++ + I+ G HP++E + A + N+T +
Sbjct: 620 LDMLLSFAHACTLSDYVRPEFTDTLA---IKQGWHPILEKISAEKPIANNTYVT-EGSNF 675
Query: 588 KVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLST 647
+ITGPN SGKS YLKQ+ L MA +GS+VPAE + IFTRI + + I ST
Sbjct: 676 LIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSST 735
Query: 648 FMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVAT 707
FM ++ ++A ++NA +SL+LIDE G+GTNT +G+ + AV + L+ AT
Sbjct: 736 FMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLS---LKAFTLFAT 792
Query: 708 NFLSLVQLQLLPQGPLVQYLTME------TCEDGNDLVFFYQVCEGVAKASHASHTAAQ- 760
+FL L + L P V+ + E T + +++ Y++ +G+ + + AA+
Sbjct: 793 HFLELCHIDAL--YPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEV 850
Query: 761 AGLPDKLVARGKEVSDLI 778
+ LP +V KE++ I
Sbjct: 851 SSLPPSIVLDAKEITTQI 868
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 142 bits (359), Expect = 1e-33
Identities = 176/669 (26%), Positives = 294/669 (43%), Gaps = 106/669 (15%)
Query: 178 LTVRALGGLLKFLGRRRIGVEL------EDY------NVSVPILGFKKFMLTHLVNIDQD 225
L + ALGG + +L + I EL E+Y VS G + +D
Sbjct: 679 LALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAV 738
Query: 226 TYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELS 285
T + L+IF + ++ G EG +L ++ CH +G++LL+ W P + ++
Sbjct: 739 TLNNLEIFLNGTN--------GSTEG-TLLERVDTCHTPFGKRLLKQWLCAPLCNHYAIN 789
Query: 286 SRLDVIQ-FFLLPQNL-DMAQML------HRLLGHIKNVPLILKRMKLSHTKVSDWQVLY 337
RLD I+ ++P + ++ ++L RLL I NV LK ++ ++
Sbjct: 790 DRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYE--- 846
Query: 338 KTVYSALGLRDACRSLP------QSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAEN 391
+T YS + D +L + I + ++A F + ++ +V+ + E
Sbjct: 847 ETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFK------SKILKQVISLQTKNPEG 900
Query: 392 RF----TVLPNIDPEIDEKKRRLMGL-----------PSFLTEVARKE------LENLDS 430
RF L D D +K R GL L ++ E LE +
Sbjct: 901 RFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRN 960
Query: 431 RIPSCSVIY--IPLIGFLLSIPRLPSMVEASDFEINGLDFMF-LSEEKLHYRSARTKELD 487
RI +++Y I + L IP +F L + L K + TK ++
Sbjct: 961 RIGCRTIVYWGIGRNRYQLEIPE--------NFTTRNLPEEYELKSTKKGCKRYWTKTIE 1012
Query: 488 ALLGDL-HCEIRDQETL--LMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGY 544
L +L + E R +L M +L ++ + LDVLL LA+ +R G
Sbjct: 1013 KKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSR--GG 1070
Query: 545 SRPRYSPQVL-------GVRIQNGRHPLME--LCARTFVPNSTECGGD-------KGRVK 588
P P +L + ++ RHP + F+PN G + K
Sbjct: 1071 DGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCV 1130
Query: 589 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 648
++TGPN GKS ++Q GL+ MA +G +VPAE + +D +FTR+ + + I G STF
Sbjct: 1131 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1190
Query: 649 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATN 708
++L++ A + +ATA SLVL+DE G+GT T DG A+ AV++ LA C +F +T+
Sbjct: 1191 FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE-LAETIKCRTLF-STH 1248
Query: 709 FLSLV----QLQLLPQGPLVQYLTMETCEDGND--LVFFYQVCEGVAKASHASHTAAQAG 762
+ SLV Q + G + + E CED + + F Y+ +G S+ + A A
Sbjct: 1249 YHSLVEDYSQNVAVRLGHMACMVENE-CEDPSQETITFLYKFIKGACPKSYGFNAARLAN 1307
Query: 763 LPDKLVARG 771
LP++++ +G
Sbjct: 1308 LPEEVIQKG 1316
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 36.2 bits (82), Expect = 0.13
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 1 MASLGANPRRTPQGP-RPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSG 59
MA L R +P P PG+A+ G P P E EEEE EEEE AE +L N G
Sbjct: 8 MADLEELSRLSPLPPGSPGSAARGRAEP-----PEEEEEEEEEEEEAEAEAVAALLLNGG 62
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 36.2 bits (82), Expect = 0.13
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 1 MASLGANPRRTPQGP-RPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSG 59
MA L R +P P PG+A+ G P P E EEEE EEEE AE +L N G
Sbjct: 8 MADLEELSRLSPLPPGSPGSAARGRAEP-----PEEEEEEEEEEEEAEAEAVAALLLNGG 62
>gi|112789532 poliovirus receptor related 2 isoform delta precursor
[Homo sapiens]
Length = 538
Score = 33.5 bits (75), Expect = 0.84
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
Query: 14 GP-RPGAASSGFPSPAPVPGP-------REAEEEEVEEEEELAEIHLCVLWNSGYLGIAY 65
GP PGA S G P P P PGP + E+EE EEEEE + N Y ++Y
Sbjct: 465 GPLHPGATSLGSPIPVP-PGPPAVEDVSLDLEDEEGEEEEEYLD-----KINPIYDALSY 518
Query: 66 YDTSDS 71
SDS
Sbjct: 519 SSPSDS 524
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 33.1 bits (74), Expect = 1.1
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 9 RRTPQGPRPGAASSGFPSPAPVPG 32
RR P GP P AAS G P PA PG
Sbjct: 759 RRPPPGPAPAAASPGPPPPASPPG 782
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 33.1 bits (74), Expect = 1.1
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 473 EEKLHYRSARTKELDALLGDLHCEIRDQE-TLLMYQLQCQVLARA-AVLTRVL 523
EE+L R + L+ +LGDL E R+QE LL Q QC A+ V TR L
Sbjct: 1872 EEELAVEGRRVQALEEVLGDLRAESREQEKALLALQQQCAEQAQEHEVETRAL 1924
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 33.1 bits (74), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 5 GANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEE 46
G PRR P A+ G A PGP E + E+ +E+EE
Sbjct: 1274 GPGPRRPPWEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEE 1315
Score = 31.6 bits (70), Expect = 3.2
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 8 PRRTPQGPRPGAASSG-FPSPAPVPGPRE 35
PR P+ P PGA P P P+PGPRE
Sbjct: 850 PRAPPEPPDPGAPRPPPDPGPLPLPGPRE 878
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 32.3 bits (72), Expect = 1.9
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 12 PQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGYLGIAYYDTSDS 71
P G P ++S+G PSP E EEEE E+EEE + + S L Y D S S
Sbjct: 253 PTGSNP-SSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAGIYDDNSLS 311
Query: 72 TIHFMPDAPDHES 84
D P ES
Sbjct: 312 -----QDFPGDES 319
>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
sapiens]
Length = 788
Score = 32.3 bits (72), Expect = 1.9
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 579 ECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDA 630
+ GGD+ KV+T N +GK++ + VG A V E AE AV+A
Sbjct: 308 DVGGDEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPEVTTEAAEASAVEA 359
>gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo
sapiens]
Length = 790
Score = 32.3 bits (72), Expect = 1.9
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 579 ECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDA 630
+ GGD+ KV+T N +GK++ + VG A V E AE AV+A
Sbjct: 310 DVGGDEPEEKVVTSENEAGKAVLEQLVGQEVPPAEESPEVTTEAAEASAVEA 361
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 32.0 bits (71), Expect = 2.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 2 ASLGANPRRTPQGPRPGAASSGFPSPAPVPGP 33
A+ G+ P + G P +A+SG SPAP GP
Sbjct: 78 AAAGSAPSQAGPGSAPSSAASGASSPAPASGP 109
>gi|17986273 fast skeletal myosin alkali light chain 1 isoform 1f
[Homo sapiens]
Length = 194
Score = 32.0 bits (71), Expect = 2.4
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 16 RPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHL 52
+P AA++ P+PAP P P A + EE+ +L+ I +
Sbjct: 9 KPVAAAAAAPAPAPAPAPAPAPAKPKEEKIDLSAIKI 45
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 32.0 bits (71), Expect = 2.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 2 ASLGANPRRTPQGPRPGAASSGFPSPAPVPGP 33
A+ G+ P + G P +A+SG SPAP GP
Sbjct: 78 AAAGSAPSQAGPGSAPSSAASGASSPAPASGP 109
>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
Length = 4169
Score = 31.6 bits (70), Expect = 3.2
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 3/127 (2%)
Query: 25 PSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES 84
P P PG E EEEE EEEEE E + + + + D+ H
Sbjct: 3 PEDLPWPGELEEEEEEEEEEEEEEEEEAAAAAAANVDDVVVVEEVEEEAGRELDSDSHYG 62
Query: 85 LKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQEHREPKRPEIIFLPSVDFGLEISK 144
+ L+ + DE + ++ A + R L L+ +HR + V + +
Sbjct: 63 PQHLESIDDEEDEEA---KAWLQAHPGRILPPLSPPQHRYSEGERTSLEKIVPLTCHVWQ 119
Query: 145 QRLLSGN 151
Q + GN
Sbjct: 120 QIVYQGN 126
>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
[Homo sapiens]
Length = 471
Score = 31.6 bits (70), Expect = 3.2
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 8 PRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEE 46
PR P+GPR GAA+ P PRE EEEE E+E +
Sbjct: 75 PRGPPEGPR-GAAAPEEEDEEP-GDPREGEEEEEEDEPD 111
>gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 31.6 bits (70), Expect = 3.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 2 ASLGANPRRTPQGPRPGAASSGFPS 26
A G +PRR+P PRPG + GFP+
Sbjct: 23 AKPGVSPRRSPALPRPGFPAPGFPA 47
>gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]
Length = 471
Score = 31.6 bits (70), Expect = 3.2
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 8 PRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEE 46
PR P+GPR GAA+ P PRE EEEE E+E +
Sbjct: 75 PRGPPEGPR-GAAAPEEEDEEP-GDPREGEEEEEEDEPD 111
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo
sapiens]
Length = 170
Score = 31.6 bits (70), Expect = 3.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 2 ASLGANPRRTPQGPRPGAASSGFPSP----APVPGPREAEEEEVEEEEELAEI 50
A+ P R P P P A ++G P+P AP P A EE E L E+
Sbjct: 31 AAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGEL 83
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo
sapiens]
Length = 177
Score = 31.6 bits (70), Expect = 3.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 2 ASLGANPRRTPQGPRPGAASSGFPSP----APVPGPREAEEEEVEEEEELAEI 50
A+ P R P P P A ++G P+P AP P A EE E L E+
Sbjct: 31 AAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGEL 83
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo
sapiens]
Length = 204
Score = 31.6 bits (70), Expect = 3.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 2 ASLGANPRRTPQGPRPGAASSGFPSP----APVPGPREAEEEEVEEEEELAEI 50
A+ P R P P P A ++G P+P AP P A EE E L E+
Sbjct: 31 AAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGEL 83
>gi|7019333 nuclear receptor binding protein [Homo sapiens]
Length = 535
Score = 31.6 bits (70), Expect = 3.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 3 SLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLW 56
S G++P+ PG S P + EEEE E+E E+ E C W
Sbjct: 11 SSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESPCGRW 64
>gi|4557415 cystathionine-beta-synthase [Homo sapiens]
Length = 551
Score = 30.8 bits (68), Expect = 5.4
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 411 MGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMF 470
+G +T +ARK L + P C +I + G +L+ P + E + +E+ G+ + F
Sbjct: 255 VGTGGTITGIARK----LKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDF 310
Query: 471 L 471
+
Sbjct: 311 I 311
>gi|116517292 cut-like 2 [Homo sapiens]
Length = 1486
Score = 30.8 bits (68), Expect = 5.4
Identities = 19/49 (38%), Positives = 21/49 (42%)
Query: 2 ASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEI 50
A GA P P P PG G P PA G A EE+ + AEI
Sbjct: 510 AFYGAKPPTAPATPAPGPEPLGGPEPADGGGGGAAGPGAEEEQLDTAEI 558
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,008,821
Number of Sequences: 37866
Number of extensions: 1440458
Number of successful extensions: 9684
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 9408
Number of HSP's gapped (non-prelim): 220
length of query: 834
length of database: 18,247,518
effective HSP length: 111
effective length of query: 723
effective length of database: 14,044,392
effective search space: 10154095416
effective search space used: 10154095416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.