Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MSH5 Sequence: fasta or formatted (834aa) NCBI GI: 4505253
Description:

mutS homolog 5 isoform c

Referenced in:

DNases, Recombination, and DNA Repair
Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [851aa] mutS homolog 5 isoform a
alt prot [835aa] mutS homolog 5 isoform b
alt mRNA [834aa] mutS homolog 5 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         57           2
 C cysteine            1.8         15           1
 D aspartate           5.5         46           2
 E glutamate           6.5         54           5
 F phenylalanine       4.4         37           2
 G glycine             6.0         50           2
 H histidine           2.5         21           2
 I isoleucine          5.5         46           2
 K lysine              4.9         41           2
 L leucine            14.3        119           2
 M methionine          2.3         19           1
 N asparagine          3.2         27           2
 P proline             5.4         45           1
 Q glutamine           4.0         33           1
 R arginine            5.5         46           3
 S serine              7.7         64           2
 T threonine           4.2         35           1
 V valine              6.7         56           2
 W tryptophan          0.6          5           1
 Y tyrosine            2.2         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mutS homolog 5 isoform c 
MSH5                  1.000   mutS homolog 5 isoform c 
MSH5                  0.997   mutS homolog 5 isoform b 
MSH5                  0.993   mutS homolog 5 isoform a 
MSH3                  0.096   mutS homolog 3 
MSH2                  0.077   mutS homolog 2 
MSH4                  0.073   mutS homolog 4 
MSH6                  0.072   mutS homolog 6 
AEBP2                 0.007   AE binding protein 2 isoform b 
AEBP2                 0.007   AE binding protein 2 isoform a 
PVRL2                 0.005   poliovirus receptor related 2 isoform delta precurs...
HCN2                  0.005   hyperpolarization activated cyclic nucleotide-gated...
CEP250                0.005   centrosomal protein 2 
LMTK3                 0.005   lemur tyrosine kinase 3 
SCAF1                 0.004   SR-related CTD-associated factor 1 
NASP                  0.004   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.004   nuclear autoantigenic sperm protein isoform 1 
ARMC5                 0.004   armadillo repeat containing 5 isoform b 
MYL1                  0.004   fast skeletal myosin alkali light chain 1 isoform 1f...
ARMC5                 0.004   armadillo repeat containing 5 isoform a 
ALMS1                 0.004   Alstrom syndrome 1 
HS6ST3                0.004   PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [...
LOC100129098          0.004   PREDICTED: hypothetical protein 
HS6ST3                0.004   heparan sulfate 6-O-sulfotransferase 3 
MXRA7                 0.004   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.004   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.004   transmembrane anchor protein 1 isoform 1 
NRBP1                 0.004   nuclear receptor binding protein 
CBS                   0.004   cystathionine-beta-synthase 
CUX2                  0.004   cut-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press