MSH5 29020

Name: MSH5	Sequence: fasta or formatted (834aa)		NCBI GI: 4505253
Description: mutS homolog 5 isoform c		Referenced in: DNases, Recombination, and DNA Repair Spindle, M phase, and Meiosis
Other entries for this name: alt prot [851aa] mutS homolog 5 isoform a alt prot [835aa] mutS homolog 5 isoform b alt mRNA [834aa] mutS homolog 5 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.8 57 2 C cysteine 1.8 15 1 D aspartate 5.5 46 2 E glutamate 6.5 54 5 F phenylalanine 4.4 37 2 G glycine 6.0 50 2 H histidine 2.5 21 2 I isoleucine 5.5 46 2 K lysine 4.9 41 2 L leucine 14.3 119 2 M methionine 2.3 19 1 N asparagine 3.2 27 2 P proline 5.4 45 1 Q glutamine 4.0 33 1 R arginine 5.5 46 3 S serine 7.7 64 2 T threonine 4.2 35 1 V valine 6.7 56 2 W tryptophan 0.6 5 1 Y tyrosine 2.2 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 mutS homolog 5 isoform c MSH5 1.000 mutS homolog 5 isoform c MSH5 0.997 mutS homolog 5 isoform b MSH5 0.993 mutS homolog 5 isoform a MSH3 0.096 mutS homolog 3 MSH2 0.077 mutS homolog 2 MSH4 0.073 mutS homolog 4 MSH6 0.072 mutS homolog 6 AEBP2 0.007 AE binding protein 2 isoform b AEBP2 0.007 AE binding protein 2 isoform a PVRL2 0.005 poliovirus receptor related 2 isoform delta precurs... HCN2 0.005 hyperpolarization activated cyclic nucleotide-gated... CEP250 0.005 centrosomal protein 2 LMTK3 0.005 lemur tyrosine kinase 3 SCAF1 0.004 SR-related CTD-associated factor 1 NASP 0.004 nuclear autoantigenic sperm protein isoform 2 NASP 0.004 nuclear autoantigenic sperm protein isoform 1 ARMC5 0.004 armadillo repeat containing 5 isoform b MYL1 0.004 fast skeletal myosin alkali light chain 1 isoform 1f... ARMC5 0.004 armadillo repeat containing 5 isoform a ALMS1 0.004 Alstrom syndrome 1 HS6ST3 0.004 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... LOC100129098 0.004 PREDICTED: hypothetical protein HS6ST3 0.004 heparan sulfate 6-O-sulfotransferase 3 MXRA7 0.004 transmembrane anchor protein 1 isoform 3 MXRA7 0.004 transmembrane anchor protein 1 isoform 2 MXRA7 0.004 transmembrane anchor protein 1 isoform 1 NRBP1 0.004 nuclear receptor binding protein CBS 0.004 cystathionine-beta-synthase CUX2 0.004 cut-like 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.