Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4504605
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504605 interferon, omega 1 [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504605 interferon, omega 1 [Homo sapiens] 389 e-108
gi|4504589 interferon, alpha 10 [Homo sapiens] 216 8e-57
gi|4504597 interferon, alpha 5 [Homo sapiens] 214 3e-56
gi|11067751 interferon, alpha 2 [Homo sapiens] 214 4e-56
gi|42476083 interferon, alpha 8 [Homo sapiens] 213 6e-56
gi|10835103 interferon, alpha 4 [Homo sapiens] 213 1e-55
gi|10880985 interferon, alpha 17 [Homo sapiens] 212 2e-55
gi|170763491 interferon, alpha 14 [Homo sapiens] 209 1e-54
gi|169791013 interferon, alpha 21 [Homo sapiens] 206 1e-53
gi|71143135 interferon, alpha 7 [Homo sapiens] 206 1e-53
gi|11128015 interferon, alpha 6 [Homo sapiens] 204 4e-53
gi|4504593 interferon, alpha 16 [Homo sapiens] 203 7e-53
gi|194394174 interferon, alpha 13 precursor [Homo sapiens] 202 2e-52
gi|13128950 interferon, alpha 1 [Homo sapiens] 200 6e-52
gi|28882045 interferon, epsilon [Homo sapiens] 107 8e-24
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens] 102 2e-22
gi|112789564 interferon kappa precursor [Homo sapiens] 91 5e-19
gi|150010604 kinesin family member 4B [Homo sapiens] 30 1.00
gi|239582751 sterile alpha motif domain containing 4 isoform 3 [... 29 2.2
gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens] 29 2.2
gi|110681719 hypothetical protein LOC23731 [Homo sapiens] 28 3.8
gi|30089974 acyl-Coenzyme A oxidase 1 isoform b [Homo sapiens] 28 3.8
gi|30089972 acyl-Coenzyme A oxidase 1 isoform a [Homo sapiens] 28 3.8
gi|21070976 diablo isoform 3 precursor [Homo sapiens] 28 4.9
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 28 6.5
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 28 6.5
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 28 6.5
gi|89034201 PREDICTED: similar to ring finger protein 18 [Homo s... 27 8.4
gi|9966829 ring finger protein 18 [Homo sapiens] 27 8.4
>gi|4504605 interferon, omega 1 [Homo sapiens]
Length = 195
Score = 389 bits (998), Expect = e-108
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
Sbjct: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
Sbjct: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
Query: 181 MQERLRSKDRDLGSS 195
MQERLRSKDRDLGSS
Sbjct: 181 MQERLRSKDRDLGSS 195
>gi|4504589 interferon, alpha 10 [Homo sapiens]
Length = 189
Score = 216 bits (551), Expect = 8e-57
Identities = 111/189 (58%), Positives = 135/189 (71%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F LL A+++ SY + SLGCDLPQ H L +R L+LL QM RISPF CLKDR DFR
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
PQE G+Q QKA +SVLHEM+QQ F+LF TE SSAAW +LL++ T L+QQL LE
Sbjct: 61 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q VG E+ L +R+YFQ I +YL E+KYS CAWEVVR EIM+SL STN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 MQERLRSKD 189
+Q+RLR KD
Sbjct: 181 LQKRLRRKD 189
>gi|4504597 interferon, alpha 5 [Homo sapiens]
Length = 189
Score = 214 bits (546), Expect = 3e-56
Identities = 110/189 (58%), Positives = 136/189 (71%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F LL ALV+ + + SLGCDLPQ H L +R TL+++ QM RISPF CLKDR DF
Sbjct: 1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQE G+Q QKA +SVLHEM+QQ F+LF T+ SSA W+ TLLD+ +T L+QQL LE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q VG ++ LT+R+YFQ I +YL EKKYS CAWEVVR EIM+S LS N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
Query: 181 MQERLRSKD 189
+QERLR K+
Sbjct: 181 LQERLRRKE 189
>gi|11067751 interferon, alpha 2 [Homo sapiens]
Length = 188
Score = 214 bits (545), Expect = 4e-56
Identities = 115/189 (60%), Positives = 137/189 (72%), Gaps = 1/189 (0%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F LL AL++ S S+GCDLPQ H L SR TL+LL QMRRIS F CLKDR DF
Sbjct: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQE G+Q QKA + VLHEM+QQIF+LF T+ SSAAW+ TLLD+ +T L+QQL LE
Sbjct: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q VG E+ L +R+YFQ I +YLKEKKYS CAWEVVR EIM+S LSTN
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
Query: 181 MQERLRSKD 189
+QE LRSK+
Sbjct: 180 LQESLRSKE 188
>gi|42476083 interferon, alpha 8 [Homo sapiens]
Length = 189
Score = 213 bits (543), Expect = 6e-56
Identities = 112/189 (59%), Positives = 133/189 (70%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F LL ALV+ SY SLGCDLPQ H L +R L+LL QMRRISPF CLKDR DF
Sbjct: 1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQE Q QKA +SVLHEM+QQ F+LF T+ SSAA + TLLD+ + L QQL LE
Sbjct: 61 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
+C++Q VG ES L +R+YFQ I +YL EKKYS CAWEVVR EIM+S LS N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
Query: 181 MQERLRSKD 189
+Q+RL+SK+
Sbjct: 181 LQKRLKSKE 189
>gi|10835103 interferon, alpha 4 [Homo sapiens]
Length = 189
Score = 213 bits (541), Expect = 1e-55
Identities = 110/189 (58%), Positives = 133/189 (70%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F LL A+++ SY + SLGCDLPQ H L +R L+LL QM RIS F CLKDR DF
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FP+E G Q QKA +SVLHEM+QQ F+LF TE SSAAW +LL++ T L+QQL LE
Sbjct: 61 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q VG E+ L +R+YFQ I +YL EKKYS CAWEVVR EIM+SL STN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 MQERLRSKD 189
+Q+RLR KD
Sbjct: 181 LQKRLRRKD 189
>gi|10880985 interferon, alpha 17 [Homo sapiens]
Length = 189
Score = 212 bits (539), Expect = 2e-55
Identities = 109/189 (57%), Positives = 133/189 (70%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F LL A+++ SY + SLGCDLPQ H L +R L+LL QM RISPF CLKDR DF
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
PQE G+Q QK +SVLHEM+QQ F+LF TE SSAAW +LL++ T L+QQL +LE
Sbjct: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q VG E+ L +R+YFQ I +YL EKKYS CAWEVVR EIM+SL STN
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 MQERLRSKD 189
+Q+ LR KD
Sbjct: 181 LQKILRRKD 189
>gi|170763491 interferon, alpha 14 [Homo sapiens]
Length = 189
Score = 209 bits (532), Expect = 1e-54
Identities = 108/189 (57%), Positives = 134/189 (70%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F L+ ALV+ S SLGC+L Q H L +R TL+L+ QMRRISPF CLKDR DF
Sbjct: 1 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQE G+Q QKA +SVLHEM+QQ F+LF T+ SSAAW+ TLL++ + L QQ+ LE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q VG E+ L +++YFQ I +YL EKKYS CAWEVVR EIM+SL STN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 MQERLRSKD 189
+Q+RLR KD
Sbjct: 181 LQKRLRRKD 189
>gi|169791013 interferon, alpha 21 [Homo sapiens]
Length = 189
Score = 206 bits (524), Expect = 1e-53
Identities = 107/189 (56%), Positives = 131/189 (69%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F LL A+++ SY + SLGCDLPQ H L +R L+LL QM RISPF CLKDR DF
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQE G+Q QKA +SVLHEM+QQ F+LF T+ SSA W +LL++ T L+QQL LE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q VG E+ L +++YFQ I +YL EKKYS CAWEVVR EIM+S LS
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
Query: 181 MQERLRSKD 189
QERLR K+
Sbjct: 181 FQERLRRKE 189
>gi|71143135 interferon, alpha 7 [Homo sapiens]
Length = 189
Score = 206 bits (523), Expect = 1e-53
Identities = 105/189 (55%), Positives = 130/189 (68%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MA F LL +++ SY + SLGCDLPQ H L +R L+LL QM RISPF CLKDR +FR
Sbjct: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FP+E G Q QK +SVLHEM+QQ F+LF TE SSAAW +LL++ T L+QQL LE
Sbjct: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q VG E+ L +R+YFQ I +YL EKKYS CAWEVVR EIM+S STN
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 MQERLRSKD 189
+++ LR KD
Sbjct: 181 LKKGLRRKD 189
>gi|11128015 interferon, alpha 6 [Homo sapiens]
Length = 189
Score = 204 bits (519), Expect = 4e-53
Identities = 109/189 (57%), Positives = 131/189 (69%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F LL ALV+ S SL CDLPQ H L R T++LL QMRRIS F CLKDR DFR
Sbjct: 1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQE G+Q QKA +SVLHE++QQ F+LF T+ SS AW+ LLD+L+T L+QQL LE
Sbjct: 61 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q V G + L +R+YFQ I +YL EKKYS CAWEVVR EIM+S S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
Query: 181 MQERLRSKD 189
+QERLR K+
Sbjct: 181 LQERLRRKE 189
>gi|4504593 interferon, alpha 16 [Homo sapiens]
Length = 189
Score = 203 bits (517), Expect = 7e-53
Identities = 107/189 (56%), Positives = 129/189 (68%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MAL F LL A+++ SY + SLGCDLPQ H L +R L+LL QM RIS F CLKDR DF
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQE+ G+Q QKA +S HEM+QQ F+LF T+ SSAAW+ TLLD+ + L QQL LE
Sbjct: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C+ Q VG E A L +R+YFQ I +YL KKYS CAWEVVR EIM+S STN
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 MQERLRSKD 189
+Q+ LR KD
Sbjct: 181 LQKGLRRKD 189
>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
Length = 190
Score = 202 bits (513), Expect = 2e-52
Identities = 108/189 (57%), Positives = 133/189 (70%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MA F LL ALV+ S SLGCDLP+ H L +R TL+LL QM RISP CL DR DF
Sbjct: 2 MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQE G+Q QKA +SVLHE++QQIF+LF T+ SSAAW+ LLD+ T L+QQL LE
Sbjct: 62 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q GE+ + L +++YF+ I +YL EKKYS CAWEVVR EIM+SL LSTN
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
Query: 181 MQERLRSKD 189
+QERLR K+
Sbjct: 182 LQERLRRKE 190
>gi|13128950 interferon, alpha 1 [Homo sapiens]
Length = 189
Score = 200 bits (509), Expect = 6e-52
Identities = 107/189 (56%), Positives = 132/189 (69%)
Query: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
MA F LL LV+ S SLGCDLP+ H L +R TL+LL QM RISP CL DR DF
Sbjct: 1 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60
Query: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
FPQE G+Q QKA +SVLHE++QQIF+LF T+ SSAAW+ LLD+ T L+QQL LE
Sbjct: 61 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120
Query: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
C++Q GE+ + L +++YF+ I +YL EKKYS CAWEVVR EIM+SL LSTN
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180
Query: 181 MQERLRSKD 189
+QERLR K+
Sbjct: 181 LQERLRRKE 189
>gi|28882045 interferon, epsilon [Homo sapiens]
Length = 208
Score = 107 bits (266), Expect = 8e-24
Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 33 LSRNTLVLLHQMRRISPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 92
+++ +L LL++++ +S CL R++F PQ+ + Q QK H +++LHEMLQQIFSLF
Sbjct: 34 VNQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFR 93
Query: 93 TERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQVVGEGESAGAISSPALTL--RRYFQGI 150
S W ++ LHQQL++LE L + + +G + S L L + YF+ I
Sbjct: 94 ANISLDGWEENHTEKFLIQLHQQLEYLEA--LMGLEAEKLSGTLGSDNLRLQVKMYFRRI 151
Query: 151 RVYLKEKKYSDCAWEVVRMEIMKSLFLSTNMQERLRSKDRDL 192
YL+ + YS CAW +V++EI + LF ++ E+L + R L
Sbjct: 152 HDYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQGRPL 193
>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
Length = 187
Score = 102 bits (254), Expect = 2e-22
Identities = 49/136 (36%), Positives = 81/136 (59%)
Query: 52 CLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTG 111
CLKDR +F P+E+ + Q QK ++EMLQ IF++F + SS WN T+++ L
Sbjct: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
Query: 112 LHQQLQHLETCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEI 171
++ Q+ HL+T L + + + + +L L+RY+ I YLK K+YS CAW +VR+EI
Sbjct: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
Query: 172 MKSLFLSTNMQERLRS 187
+++ + + LR+
Sbjct: 172 LRNFYFINRLTGYLRN 187
>gi|112789564 interferon kappa precursor [Homo sapiens]
Length = 207
Score = 91.3 bits (225), Expect = 5e-19
Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 21 SLGCDLPQNHGLLSRNTLVLLHQMRRIS---PFLCLKDRRDFRFPQEMVKGSQLQKAHVM 77
SL C+L H L R T L + +S P CL++ F PQE ++ +Q K +
Sbjct: 27 SLDCNLLNVH--LRRVTWQNLRHLSSMSNSFPVECLRENIAFELPQEFLQYTQPMKRDIK 84
Query: 78 SVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQVVGEGESAGAIS 137
+EM Q F++F ++ + W L Q+ GL QQ ++L CL + E E +
Sbjct: 85 KAFYEMSLQAFNIF-SQHTFKYWKERHLKQIQIGLDQQAEYLNQCLEEDKNENEDMKEMK 143
Query: 138 S-------------PALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLF 176
+L LRRYF I +LKEKKYSDCAWE+VR+EI + L+
Sbjct: 144 ENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEIVRVEIRRCLY 195
>gi|150010604 kinesin family member 4B [Homo sapiens]
Length = 1234
Score = 30.4 bits (67), Expect = 1.00
Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 12/175 (6%)
Query: 29 NHGLLSRNTLVLLHQMRRISPFLCLKDRRDFRFPQEMVKGSQ--LQKAHVMSVLHEMLQQ 86
N GLL ++ + F+ +D + R Q+ + G+ L A V + +
Sbjct: 264 NRGLLCLGNVISALGDDKKGSFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNLEET 323
Query: 87 IFSLFHTERSSAAWNMTLLD-QLHTG----LHQQLQHLETCLLQVVGEGESAGAISS-PA 140
+ +L + +R+ N +++ HT L QQ+Q L+ LLQ G G G+I++ P+
Sbjct: 324 LSTLRYADRARKIKNKPIVNIDPHTAELNHLKQQVQQLQVLLLQAHG-GTLPGSINAEPS 382
Query: 141 LTLRRYFQGIRVYLKE-KKYSDCAWEVV--RMEIMKSLFLSTNMQERLRSKDRDL 192
L+ + + ++E +K S C + ++++ + L+ + E+L +K +L
Sbjct: 383 ENLQSLMEKNQSLVEENEKLSRCLSKAAGQTAQMLERIILTEQVNEKLNAKLEEL 437
>gi|239582751 sterile alpha motif domain containing 4 isoform 3
[Homo sapiens]
Length = 345
Score = 29.3 bits (64), Expect = 2.2
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 17/144 (11%)
Query: 14 TSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFRFPQEMVKGSQ-LQ 72
T+ S G +G P+ + + SRN + S F+ R P M +G Q L
Sbjct: 174 TAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLW 233
Query: 73 KAH------VMSVLHEMLQQIFSL-FHTERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQ 125
A+ + S H +Q+ SL HT + Q+H+GL CL
Sbjct: 234 FANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGL---------CLTD 284
Query: 126 VVGEGESAGAISSPALTLRRYFQG 149
+ G +GA S PALT+ + QG
Sbjct: 285 LRGWLSLSGAPSMPALTVPKSSQG 308
>gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens]
Length = 1261
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 145 RYFQGIRVYLKEKKYSDCAWEVVRM---EIMKSLFLSTNMQERLRSKD 189
R F + +YLKE +SDC EV+ + E+++ L N + L S D
Sbjct: 53 RKFSHMLLYLKEAIFSDCFKEVIHIRLEELLRVLKSIMNKHQNLNSVD 100
>gi|110681719 hypothetical protein LOC23731 [Homo sapiens]
Length = 879
Score = 28.5 bits (62), Expect = 3.8
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 16/69 (23%)
Query: 125 QVVGEGESAGAIS-----------SPALTLRRYFQGIRVYLKEKKYSD-----CAWEVVR 168
+ V GESA +S SP+ TL R I +L++KK SD W +V
Sbjct: 306 EAVDRGESAPTLSTSPSPSSPSPTSPSPTLGRRRPEIGTFLRKKKTSDIYFVSLVWAIVV 365
Query: 169 MEIMKSLFL 177
M+I +L++
Sbjct: 366 MQIWLNLWI 374
>gi|30089974 acyl-Coenzyme A oxidase 1 isoform b [Homo sapiens]
Length = 660
Score = 28.5 bits (62), Expect = 3.8
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 58 DFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLD 106
D P+ + + +L+ A ++ + + LQ+ + H + AWN+T +D
Sbjct: 476 DINSPESLTEAYKLRAARLVEIAAKNLQK--EVIHRKSKEVAWNLTSVD 522
>gi|30089972 acyl-Coenzyme A oxidase 1 isoform a [Homo sapiens]
Length = 660
Score = 28.5 bits (62), Expect = 3.8
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 58 DFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLD 106
D P+ + + +L+ A ++ + + LQ+ + H + AWN+T +D
Sbjct: 476 DINSPESLTEAYKLRAARLVEIAAKNLQK--EVIHRKSKEVAWNLTSVD 522
>gi|21070976 diablo isoform 3 precursor [Homo sapiens]
Length = 195
Score = 28.1 bits (61), Expect = 4.9
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 72 QKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLH-TGLHQQLQHLETCLLQVVGEG 130
Q + ++ L+ + ++E W + + + T HQ+ LET + VG
Sbjct: 61 QAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLS 120
Query: 131 ESAG------AISSPALTLRRYFQGIRVYLKE 156
E A ++T R + Q +++ ++E
Sbjct: 121 EMAAEAAYQTGADQASITARNHIQLVKLQVEE 152
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4
[Homo sapiens]
Length = 3321
Score = 27.7 bits (60), Expect = 6.5
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 77 MSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQVVGEGE----S 132
+S L +M ++ + + RS N+TL Q L LET ++ G+ + S
Sbjct: 1084 LSKLQDMYDELMMIIGSRRSGLNQNLTLKSQYERALQDLADLLETGQEKMAGDQKIIVSS 1143
Query: 133 AGAISSPALTLRRYFQGIRVYL 154
I + YFQG+ ++
Sbjct: 1144 KEEIQQLLDKHKEYFQGLESHM 1165
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 27.7 bits (60), Expect = 6.5
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 77 MSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQVVGEGE----S 132
+S L +M ++ + + RS N+TL Q L LET ++ G+ + S
Sbjct: 6489 LSKLQDMYDELMMIIGSRRSGLNQNLTLKSQYERALQDLADLLETGQEKMAGDQKIIVSS 6548
Query: 133 AGAISSPALTLRRYFQGIRVYL 154
I + YFQG+ ++
Sbjct: 6549 KEEIQQLLDKHKEYFQGLESHM 6570
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 27.7 bits (60), Expect = 6.5
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 77 MSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQVVGEGE----S 132
+S L +M ++ + + RS N+TL Q L LET ++ G+ + S
Sbjct: 6560 LSKLQDMYDELMMIIGSRRSGLNQNLTLKSQYERALQDLADLLETGQEKMAGDQKIIVSS 6619
Query: 133 AGAISSPALTLRRYFQGIRVYL 154
I + YFQG+ ++
Sbjct: 6620 KEEIQQLLDKHKEYFQGLESHM 6641
>gi|89034201 PREDICTED: similar to ring finger protein 18 [Homo
sapiens]
Length = 452
Score = 27.3 bits (59), Expect = 8.4
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 52 CLKDRRDFRFP------QEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLL 105
C KD + R Q+M ++ H + +L + ++IF H ++ A M +L
Sbjct: 167 CWKDYVNLRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAKMAHRMEIL 226
Query: 106 DQLHTGLHQQLQHLETCLLQVVGE 129
++ L++ + LLQ G+
Sbjct: 227 RGMYEELNEMCHKPDVELLQAFGD 250
>gi|9966829 ring finger protein 18 [Homo sapiens]
Length = 452
Score = 27.3 bits (59), Expect = 8.4
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 52 CLKDRRDFRFP------QEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLL 105
C KD + R Q+M ++ H + +L + ++IF H ++ A M +L
Sbjct: 167 CWKDYVNLRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAKMAHRMEIL 226
Query: 106 DQLHTGLHQQLQHLETCLLQVVGE 129
++ L++ + LLQ G+
Sbjct: 227 RGMYEELNEMCHKPDVELLQAFGD 250
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,854,250
Number of Sequences: 37866
Number of extensions: 271087
Number of successful extensions: 898
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 31
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.