Guide to the Human Genome
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Name: LOC100287550 Sequence: fasta or formatted (178aa) NCBI GI: 239742857
Description:

PREDICTED: hypothetical protein XP_002342664

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         24           3
 C cysteine            2.2          4           1
 D aspartate           2.8          5           1
 E glutamate           0.0          0           0
 F phenylalanine       3.4          6           1
 G glycine             8.4         15           2
 H histidine           2.2          4           2
 I isoleucine          0.6          1           1
 K lysine              1.7          3           1
 L leucine             8.4         15           2
 M methionine          1.7          3           1
 N asparagine          0.0          0           0
 P proline            11.8         21           4
 Q glutamine           2.2          4           1
 R arginine           14.0         25           6
 S serine              9.0         16           2
 T threonine           6.7         12           1
 V valine              7.3         13           2
 W tryptophan          2.2          4           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342664 
LOC100293840          1.000   PREDICTED: hypothetical protein 
LOC100290046          1.000   PREDICTED: hypothetical protein XP_002346831 
LOC100294262          1.000   PREDICTED: hypothetical protein XP_002344073 
LOC100294248          1.000   PREDICTED: hypothetical protein 
LOC100294135          1.000   PREDICTED: hypothetical protein 
LOC100294213          0.788   PREDICTED: hypothetical protein 
LOC100294146          0.788   PREDICTED: hypothetical protein 
LOC100292351          0.055   PREDICTED: hypothetical protein 
LOC100294389          0.055   PREDICTED: hypothetical protein 
BTBD2                 0.041   BTB (POZ) domain containing 2 
GGN                   0.041   gametogenetin 
SOX3                  0.041   SRY (sex determining region Y)-box 3 
SPAG8                 0.032   sperm associated antigen 8 isoform 1 
SPAG8                 0.032   sperm associated antigen 8 isoform 2 
LOC100289408          0.032   PREDICTED: hypothetical protein 
LOC100289408          0.032   PREDICTED: hypothetical protein XP_002344217 
AMOT                  0.029   angiomotin isoform 2 
AMOT                  0.029   angiomotin isoform 1 
RSBN1                 0.029   round spermatid basic protein 1 
HCN4                  0.029   hyperpolarization activated cyclic nucleotide-gated p...
LOC100291908          0.029   PREDICTED: hypothetical protein XP_002345432 
CPEB3                 0.029   cytoplasmic polyadenylation element binding protein ...
TYRO3                 0.029   TYRO3 protein tyrosine kinase 
LOC100289092          0.026   PREDICTED: hypothetical protein isoform 3 
LOC100289092          0.026   PREDICTED: hypothetical protein isoform 2 
LOC100289092          0.026   PREDICTED: hypothetical protein isoform 1 
LOC100289092          0.026   PREDICTED: hypothetical protein XP_002343476 isofor...
LOC100289092          0.026   PREDICTED: hypothetical protein XP_002343475 isofor...
LOC100289092          0.026   PREDICTED: hypothetical protein XP_002343474 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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