Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4504343
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504343 nuclear receptor subfamily 5, group A, member 2
isoform 2 [Homo sapiens]
(495 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504343 nuclear receptor subfamily 5, group A, member 2 isofo... 1001 0.0
gi|45545405 nuclear receptor subfamily 5, group A, member 2 isof... 979 0.0
gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Hom... 560 e-159
gi|53729327 nuclear receptor subfamily 6, group A, member 1 isof... 168 1e-41
gi|53729325 nuclear receptor subfamily 6, group A, member 1 isof... 167 3e-41
gi|4506755 retinoid X receptor, alpha [Homo sapiens] 134 1e-31
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens] 130 2e-30
gi|11415052 retinoid X receptor, beta [Homo sapiens] 130 4e-30
gi|19743907 RAR-related orphan receptor B [Homo sapiens] 127 2e-29
gi|19743905 RAR-related orphan receptor A isoform d [Homo sapiens] 124 2e-28
gi|4506577 RAR-related orphan receptor A isoform c [Homo sapiens] 124 2e-28
gi|19743901 RAR-related orphan receptor A isoform b [Homo sapiens] 124 2e-28
gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens] 124 2e-28
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo... 122 1e-27
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 121 2e-27
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 121 2e-27
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 121 2e-27
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 121 2e-27
gi|45545429 estrogen-related receptor gamma isoform 2 [Homo sapi... 118 1e-26
gi|45545427 estrogen-related receptor gamma isoform 2 [Homo sapi... 118 1e-26
gi|45545433 estrogen-related receptor gamma isoform 1 [Homo sapi... 118 1e-26
gi|197209821 estrogen-related receptor gamma isoform 2 [Homo sap... 118 1e-26
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom... 117 2e-26
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom... 117 2e-26
gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Hom... 117 2e-26
gi|223555953 nuclear receptor subfamily 2, group F, member 2 iso... 117 3e-26
gi|223555951 nuclear receptor subfamily 2, group F, member 2 iso... 117 3e-26
gi|223555949 nuclear receptor subfamily 2, group F, member 2 iso... 117 3e-26
gi|14149746 nuclear receptor subfamily 2, group F, member 2 isof... 117 3e-26
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo... 117 3e-26
>gi|4504343 nuclear receptor subfamily 5, group A, member 2 isoform
2 [Homo sapiens]
Length = 495
Score = 1001 bits (2588), Expect = 0.0
Identities = 495/495 (100%), Positives = 495/495 (100%)
Query: 1 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC 60
MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC
Sbjct: 1 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC 60
Query: 61 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN 120
KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN
Sbjct: 61 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN 120
Query: 121 KFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLN 180
KFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLN
Sbjct: 121 KFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLN 180
Query: 181 HAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMG 240
HAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMG
Sbjct: 181 HAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMG 240
Query: 241 YSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC 300
YSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC
Sbjct: 241 YSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC 300
Query: 301 KMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLV 360
KMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLV
Sbjct: 301 KMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLV 360
Query: 361 TGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLEN 420
TGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLEN
Sbjct: 361 TGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLEN 420
Query: 421 FQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDV 480
FQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDV
Sbjct: 421 FQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDV 480
Query: 481 PYNNLLIEMLHAKRA 495
PYNNLLIEMLHAKRA
Sbjct: 481 PYNNLLIEMLHAKRA 495
>gi|45545405 nuclear receptor subfamily 5, group A, member 2 isoform
1 [Homo sapiens]
Length = 541
Score = 979 bits (2531), Expect = 0.0
Identities = 495/541 (91%), Positives = 495/541 (91%), Gaps = 46/541 (8%)
Query: 1 MSSNSDTGDLQESLKHGLTPI--------------------------------------- 21
MSSNSDTGDLQESLKHGLTPI
Sbjct: 1 MSSNSDTGDLQESLKHGLTPIGAGLPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQG 60
Query: 22 -------VSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRY 74
VSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRY
Sbjct: 61 QMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRY 120
Query: 75 TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ 134
TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ
Sbjct: 121 TCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ 180
Query: 135 QKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPF 194
QKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPF
Sbjct: 181 QKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPF 240
Query: 195 VTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS 254
VTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS
Sbjct: 241 VTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS 300
Query: 255 IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA 314
IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA
Sbjct: 301 IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA 360
Query: 315 RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA 374
RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA
Sbjct: 361 RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA 420
Query: 375 GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA 434
GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA
Sbjct: 421 GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA 480
Query: 435 LLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
LLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR
Sbjct: 481 LLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Query: 495 A 495
A
Sbjct: 541 A 541
>gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Homo
sapiens]
Length = 461
Score = 560 bits (1442), Expect = e-159
Identities = 288/470 (61%), Positives = 356/470 (75%), Gaps = 13/470 (2%)
Query: 28 VNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKT 87
++YSYDEDL+ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNK YTC E+Q+C+IDKT
Sbjct: 1 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT 60
Query: 88 QRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKL 147
QRKRCP+CRFQKCL+VGM+LEAVRADRMRGGRNKFGPMYKRDRALKQQKKA IRANG KL
Sbjct: 61 QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL 120
Query: 148 EAMSQV-IQAMPSDLTISSAIQNIHSAS-KGLPLNHAALPPTDYDRSPFVTSPISMTMP- 204
E + + P ++H KGL A P D F + M +P
Sbjct: 121 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGD-----FGAPALPMAVPG 175
Query: 205 PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLK 264
HG L GY Y FP RAIKSEYP+PY S P+ + Y Y + + S ++P LIL+LL+
Sbjct: 176 AHGPLAGY-LYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPF--SGGPNVPELILQLLQ 232
Query: 265 CEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELK 324
EPDE QV+A+I+ LQ+ +S+ ++ + FGL+C+MADQT SIV+WAR + F+EL+
Sbjct: 233 LEPDEDQVRARILGCLQEP--TKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELE 290
Query: 325 VDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSH 384
V DQM LLQNCWSELL+ DHIYRQV HGKEGSI LVTGQ+V+ + +A+QAG+ L++L+
Sbjct: 291 VADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLR 350
Query: 385 AQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYP 444
AQELV +L +LQ D++EFVCLKF++LFSLD+K L N LV+ QE+ NAALLDYT+C+YP
Sbjct: 351 AQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 410
Query: 445 QQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
+KF QLLL L E+RA+SMQA+EYLY+KHL ++P NNLLIEML AK+
Sbjct: 411 HCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
>gi|53729327 nuclear receptor subfamily 6, group A, member 1 isoform
2 [Homo sapiens]
Length = 475
Score = 168 bits (425), Expect = 1e-41
Identities = 117/441 (26%), Positives = 197/441 (44%), Gaps = 52/441 (11%)
Query: 33 DEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRC 92
D + C +CGD+ +G HYG+++CE CKGFFKR++ N + Y C ++NC + + QR RC
Sbjct: 49 DRAEQRTCLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRC 108
Query: 93 PYCRFQKCLSVGMKLEAVRADRMRGGRNK-FGPMYKRDRALKQQKKALIRANGLKLEAMS 151
YCR KCL +GM +A+R D M GGRNK GP+ + +++ + ++ + EA
Sbjct: 109 QYCRLLKCLQMGMNRKAIREDGMPGGRNKSIGPV----QISEEEIERIMSGQEFEEEANH 164
Query: 152 QVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQG 211
+ + + S G L+ ++ + F + M++PPH
Sbjct: 165 WSNHGDSDHSSPGNRASESNQPSPGSTLSSRSVELNGF--MAFREQYMGMSVPPH----- 217
Query: 212 YQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEP-DEP 270
Y + P S + S+ SY S+ H +L EP P
Sbjct: 218 ---YQYIPHLFSYSGHSPLLPQQARSLDPQSY----------SLIHQLLSAEDLEPLGTP 264
Query: 271 QVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMK 330
+ A Q E F L+C++AD+ LF + W + FF EL + D
Sbjct: 265 MLIEDGYAVTQAE-----------LFALLCRLADELLFRQIAWIKKLPFFCELSIKDYTC 313
Query: 331 LLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVA 390
LL + W EL++L + V+ K+ + G+ D + S + L+ E++
Sbjct: 314 LLSSTWQELILLSSL---TVYSKQ-----IFGELADVTAKYSPSDEELHRFSDEGMEVIE 365
Query: 391 KL-------RSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNY 443
+L L+ E+ C+K + + D++ L + +E + ++ D+T Y
Sbjct: 366 RLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKY 425
Query: 444 PQQTEKFGQLLLRLPEIRAIS 464
Q +F L++ LPEIR I+
Sbjct: 426 THQPNRFPDLMMCLPEIRYIA 446
>gi|53729325 nuclear receptor subfamily 6, group A, member 1 isoform
1 [Homo sapiens]
Length = 480
Score = 167 bits (422), Expect = 3e-41
Identities = 118/446 (26%), Positives = 199/446 (44%), Gaps = 51/446 (11%)
Query: 28 VNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKT 87
++ S D + C +CGD+ +G HYG+++CE CKGFFKR++ N + Y C ++NC + +
Sbjct: 48 ISVSDDRAEQRTCLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRK 107
Query: 88 QRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNK-FGPMYKRDRALKQQKKALIRANGLK 146
QR RC YCR KCL +GM +A+R D M GGRNK GP+ + +++ + ++ +
Sbjct: 108 QRNRCQYCRLLKCLQMGMNRKAIREDGMPGGRNKSIGPV----QISEEEIERIMSGQEFE 163
Query: 147 LEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPH 206
EA + + + S G L+ + + F + M++PPH
Sbjct: 164 EEANHWSNHGDSDHSSPGNRASESNQPSPGSTLSSSRSVELN-GFMAFREQYMGMSVPPH 222
Query: 207 GSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCE 266
Y + P S + S+ SY S+ H +L E
Sbjct: 223 --------YQYIPHLFSYSGHSPLLPQQARSLDPQSY----------SLIHQLLSAEDLE 264
Query: 267 P-DEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKV 325
P P + A Q E F L+C++AD+ LF + W + FF EL +
Sbjct: 265 PLGTPMLIEDGYAVTQAE-----------LFALLCRLADELLFRQIAWIKKLPFFCELSI 313
Query: 326 DDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHA 385
D LL + W EL++L + V+ K+ + G+ D + S + L+
Sbjct: 314 KDYTCLLSSTWQELILLSSL---TVYSKQ-----IFGELADVTAKYSPSDEELHRFSDEG 365
Query: 386 QELVAKL-------RSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDY 438
E++ +L L+ E+ C+K + + D++ L + +E + ++ D+
Sbjct: 366 MEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYICQDF 425
Query: 439 TMCNYPQQTEKFGQLLLRLPEIRAIS 464
T Y Q +F L++ LPEIR I+
Sbjct: 426 TEYKYTHQPNRFPDLMMCLPEIRYIA 451
>gi|4506755 retinoid X receptor, alpha [Homo sapiens]
Length = 462
Score = 134 bits (338), Expect = 1e-31
Identities = 80/195 (41%), Positives = 122/195 (62%), Gaps = 6/195 (3%)
Query: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 358
+C+ AD+ LF++VEWA+ F EL +DDQ+ LL+ W+ELLI +R + K+G I
Sbjct: 268 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDG-IL 325
Query: 359 LVTGQQVDY-SIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 417
L TG V S ++ GA + +++ ELV+K+R +Q D+ E CL+ +VLF+ D K
Sbjct: 326 LATGLHVHRNSAHSAGVGAIFDRVLT---ELVSKMRDMQMDKTELGCLRAIVLFNPDSKG 382
Query: 418 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 477
L N VE ++E+V A+L Y YP+Q +F +LLLRLP +R+I ++ E+L++ L
Sbjct: 383 LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 442
Query: 478 GDVPYNNLLIEMLHA 492
GD P + L+EML A
Sbjct: 443 GDTPIDTFLMEMLEA 457
Score = 118 bits (295), Expect = 1e-26
Identities = 48/81 (59%), Positives = 64/81 (79%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
+ +C +CGD+ SG HYG+ +CE CKGFFKRTV+ + YTC +N++C IDK QR RC YCR
Sbjct: 132 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCR 191
Query: 97 FQKCLSVGMKLEAVRADRMRG 117
+QKCL++GMK EAV+ +R RG
Sbjct: 192 YQKCLAMGMKREAVQEERQRG 212
>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
Length = 463
Score = 130 bits (328), Expect = 2e-30
Identities = 76/193 (39%), Positives = 117/193 (60%), Gaps = 6/193 (3%)
Query: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 358
+C AD+ LF++VEWA+ F +L ++DQ+ LL+ W+ELLI +R V + I
Sbjct: 269 ICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSV--SVQDGIL 326
Query: 359 LVTGQQVDYSIIASQA-GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 417
L TG V S S G+ + +++ ELV+K++ +Q D+ E CL+ +VLF+ D K
Sbjct: 327 LATGLHVHRSSAHSAGVGSIFDRVLT---ELVSKMKDMQMDKSELGCLRAIVLFNPDAKG 383
Query: 418 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 477
L N VE ++E+V A L YT YP+Q +F +LLLRLP +R+I ++ E+L++ L
Sbjct: 384 LSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 443
Query: 478 GDVPYNNLLIEML 490
GD P + L+EML
Sbjct: 444 GDTPIDTFLMEML 456
Score = 114 bits (284), Expect = 3e-25
Identities = 46/81 (56%), Positives = 63/81 (77%)
Query: 36 LEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYC 95
++ +C +CGD+ SG HYG+ +CE CKGFFKRT++ + YTC +N++C IDK QR RC YC
Sbjct: 135 VKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYC 194
Query: 96 RFQKCLSVGMKLEAVRADRMR 116
R+QKCL +GMK EAV+ +R R
Sbjct: 195 RYQKCLVMGMKREAVQEERQR 215
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 130 bits (326), Expect = 4e-30
Identities = 75/195 (38%), Positives = 118/195 (60%), Gaps = 6/195 (3%)
Query: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 358
+C+ AD+ LF++VEWA+ F L +DDQ+ LL+ W+ELLI +R + I
Sbjct: 339 ICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSI--DVRDGIL 396
Query: 359 LVTGQQVDY-SIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 417
L TG V S ++ GA + +++ ELV+K+R ++ D+ E CL+ ++LF+ D K
Sbjct: 397 LATGLHVHRNSAHSAGVGAIFDRVLT---ELVSKMRDMRMDKTELGCLRAIILFNPDAKG 453
Query: 418 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 477
L N VE ++E+V A+L Y YP+Q +F +LLLRLP +R+I ++ E+L++ L
Sbjct: 454 LSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 513
Query: 478 GDVPYNNLLIEMLHA 492
GD P + L+EML A
Sbjct: 514 GDTPIDTFLMEMLEA 528
Score = 116 bits (291), Expect = 4e-26
Identities = 46/81 (56%), Positives = 63/81 (77%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
+ LC +CGD+ SG HYG+ +CE CKGFFKRT++ + Y+C +N++C +DK QR RC YCR
Sbjct: 202 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 261
Query: 97 FQKCLSVGMKLEAVRADRMRG 117
+QKCL+ GMK EAV+ +R RG
Sbjct: 262 YQKCLATGMKREAVQEERQRG 282
>gi|19743907 RAR-related orphan receptor B [Homo sapiens]
Length = 459
Score = 127 bits (320), Expect = 2e-29
Identities = 124/460 (26%), Positives = 221/460 (48%), Gaps = 51/460 (11%)
Query: 40 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 99
C +CGDK SG HYG++TCE CKGFF+R+ QNN Y+C +NC ID+T R RC +CR QK
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 100 CLSVGMKLEAVRADRM--RGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAM 157
CL++GM +AV+ RM + + + + K + L++Q++ + +G + EA+++V +
Sbjct: 70 CLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQ---QQSG-EAEALARVYSS- 124
Query: 158 PSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGH 217
+IS+ + N+++ + G N + D +S + S P S G G
Sbjct: 125 ----SISNGLSNLNNETSGTYANGHVI---DLPKSEGYYNVDSGQPSPDQS--GLDMTG- 174
Query: 218 FPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTS---SPASIPHLILELLKCEPDEPQV-- 272
+ IK E TS P ++ YS ++ Q + + I + ++K + Q
Sbjct: 175 --IKQIKQEPIYDLTSVP-NLFTYSSFNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTM 231
Query: 273 -QAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSI---VEWARSSIFFRELKVDDQ 328
+ +A+ ++ S L + A Q +I VE+A+ F EL +DQ
Sbjct: 232 EELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQ 291
Query: 329 MKLLQNCWSELLIL------DHIYRQVV-HGKEGSIFLVTGQQVDYSIIASQAGATLNNL 381
+ LL++ E++++ + + V+ GK G G Q+ + + S ++L
Sbjct: 292 ILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYG------GMQM-FKALGS------DDL 338
Query: 382 MSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMC 441
++ A + L SLQ + E VL S D L + V+ +QE++ AL
Sbjct: 339 VNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQK 398
Query: 442 NYPQQTEKFGQLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 480
N+ E +L+ ++P I A+ ++ E+ +K + ++
Sbjct: 399 NH-LDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPEI 437
>gi|19743905 RAR-related orphan receptor A isoform d [Homo sapiens]
Length = 468
Score = 124 bits (311), Expect = 2e-28
Identities = 113/450 (25%), Positives = 192/450 (42%), Gaps = 33/450 (7%)
Query: 40 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 99
C +CGDK SG HYG++TCE CKGFF+R+ Q+N Y+C +NC ID+T R RC +CR QK
Sbjct: 18 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 77
Query: 100 CLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPS 159
CL+VGM +AV KFG M K KQ+ +++ + Q P
Sbjct: 78 CLAVGMSRDAV----------KFGRMSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPG 122
Query: 160 DLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 219
+ + NI ++ GL H L +P + S + +Q
Sbjct: 123 EAEPLTPTYNI--SANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD 180
Query: 220 SRAIKSEYPDPYTSSPESIMGYSYM--DSYQTSSPASIPHLILELLKCEPD------EPQ 271
IK E YT + S+ ++ T S A + HL + K + E
Sbjct: 181 INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL 240
Query: 272 VQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKL 331
Q +LQ+E N ++ + L + + +VE+A+ F EL +DQ+ L
Sbjct: 241 QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL 300
Query: 332 LQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAK 391
L+ E++ + + + +++ G+ + S + +S E
Sbjct: 301 LKAGSLEVVFIRMC--RAFDSQNNTVYF-DGKYASPDVFKSLG---CEDFISFVFEFGKS 354
Query: 392 LRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 451
L S+ + E VL S D L+ +E +Q+++ AL N+ ++
Sbjct: 355 LCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILT 413
Query: 452 QLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 480
+L+ ++ +RA+ E+ + +K + D+
Sbjct: 414 KLICKVSTLRALCGRHTEKLMAFKAIYPDI 443
>gi|4506577 RAR-related orphan receptor A isoform c [Homo sapiens]
Length = 548
Score = 124 bits (311), Expect = 2e-28
Identities = 113/450 (25%), Positives = 192/450 (42%), Gaps = 33/450 (7%)
Query: 40 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 99
C +CGDK SG HYG++TCE CKGFF+R+ Q+N Y+C +NC ID+T R RC +CR QK
Sbjct: 98 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 157
Query: 100 CLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPS 159
CL+VGM +AV KFG M K KQ+ +++ + Q P
Sbjct: 158 CLAVGMSRDAV----------KFGRMSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPG 202
Query: 160 DLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 219
+ + NI ++ GL H L +P + S + +Q
Sbjct: 203 EAEPLTPTYNI--SANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD 260
Query: 220 SRAIKSEYPDPYTSSPESIMGYSYM--DSYQTSSPASIPHLILELLKCEPD------EPQ 271
IK E YT + S+ ++ T S A + HL + K + E
Sbjct: 261 INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL 320
Query: 272 VQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKL 331
Q +LQ+E N ++ + L + + +VE+A+ F EL +DQ+ L
Sbjct: 321 QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL 380
Query: 332 LQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAK 391
L+ E++ + + + +++ G+ + S + +S E
Sbjct: 381 LKAGSLEVVFIRMC--RAFDSQNNTVYF-DGKYASPDVFKSLG---CEDFISFVFEFGKS 434
Query: 392 LRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 451
L S+ + E VL S D L+ +E +Q+++ AL N+ ++
Sbjct: 435 LCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILT 493
Query: 452 QLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 480
+L+ ++ +RA+ E+ + +K + D+
Sbjct: 494 KLICKVSTLRALCGRHTEKLMAFKAIYPDI 523
>gi|19743901 RAR-related orphan receptor A isoform b [Homo sapiens]
Length = 556
Score = 124 bits (311), Expect = 2e-28
Identities = 113/450 (25%), Positives = 192/450 (42%), Gaps = 33/450 (7%)
Query: 40 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 99
C +CGDK SG HYG++TCE CKGFF+R+ Q+N Y+C +NC ID+T R RC +CR QK
Sbjct: 106 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 165
Query: 100 CLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPS 159
CL+VGM +AV KFG M K KQ+ +++ + Q P
Sbjct: 166 CLAVGMSRDAV----------KFGRMSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPG 210
Query: 160 DLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 219
+ + NI ++ GL H L +P + S + +Q
Sbjct: 211 EAEPLTPTYNI--SANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD 268
Query: 220 SRAIKSEYPDPYTSSPESIMGYSYM--DSYQTSSPASIPHLILELLKCEPD------EPQ 271
IK E YT + S+ ++ T S A + HL + K + E
Sbjct: 269 INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL 328
Query: 272 VQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKL 331
Q +LQ+E N ++ + L + + +VE+A+ F EL +DQ+ L
Sbjct: 329 QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL 388
Query: 332 LQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAK 391
L+ E++ + + + +++ G+ + S + +S E
Sbjct: 389 LKAGSLEVVFIRMC--RAFDSQNNTVYF-DGKYASPDVFKSLG---CEDFISFVFEFGKS 442
Query: 392 LRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 451
L S+ + E VL S D L+ +E +Q+++ AL N+ ++
Sbjct: 443 LCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILT 501
Query: 452 QLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 480
+L+ ++ +RA+ E+ + +K + D+
Sbjct: 502 KLICKVSTLRALCGRHTEKLMAFKAIYPDI 531
>gi|19743903 RAR-related orphan receptor A isoform a [Homo sapiens]
Length = 523
Score = 124 bits (311), Expect = 2e-28
Identities = 113/450 (25%), Positives = 192/450 (42%), Gaps = 33/450 (7%)
Query: 40 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 99
C +CGDK SG HYG++TCE CKGFF+R+ Q+N Y+C +NC ID+T R RC +CR QK
Sbjct: 73 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 132
Query: 100 CLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPS 159
CL+VGM +AV KFG M K KQ+ +++ + Q P
Sbjct: 133 CLAVGMSRDAV----------KFGRMSK-----KQRDSLYAEVQKHRMQQQQRDHQQQPG 177
Query: 160 DLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFP 219
+ + NI ++ GL H L +P + S + +Q
Sbjct: 178 EAEPLTPTYNI--SANGLTELHDDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD 235
Query: 220 SRAIKSEYPDPYTSSPESIMGYSYM--DSYQTSSPASIPHLILELLKCEPD------EPQ 271
IK E YT + S+ ++ T S A + HL + K + E
Sbjct: 236 INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL 295
Query: 272 VQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKL 331
Q +LQ+E N ++ + L + + +VE+A+ F EL +DQ+ L
Sbjct: 296 QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL 355
Query: 332 LQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAK 391
L+ E++ + + + +++ G+ + S + +S E
Sbjct: 356 LKAGSLEVVFIRMC--RAFDSQNNTVYF-DGKYASPDVFKSLG---CEDFISFVFEFGKS 409
Query: 392 LRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFG 451
L S+ + E VL S D L+ +E +Q+++ AL N+ ++
Sbjct: 410 LCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILT 468
Query: 452 QLLLRLPEIRAI-SMQAEEYLYYKHLNGDV 480
+L+ ++ +RA+ E+ + +K + D+
Sbjct: 469 KLICKVSTLRALCGRHTEKLMAFKAIYPDI 498
>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
sapiens]
Length = 598
Score = 122 bits (305), Expect = 1e-27
Identities = 51/85 (60%), Positives = 62/85 (72%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
E LC VCGD + HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 260 EGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 319
Query: 97 FQKCLSVGMKLEAVRADRMRGGRNK 121
FQKCL+VGM E VR D ++G R +
Sbjct: 320 FQKCLAVGMVKEVVRTDSLKGRRGR 344
Score = 43.5 bits (101), Expect = 4e-04
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 313 WARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIAS 372
WA F +L DQ L ++ + EL +L YR + EG + G +
Sbjct: 420 WAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRS--NPVEGKLIFCNGVVLHRLQCVR 477
Query: 373 QAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVN 432
G +++++ E + L+++ D F C+ L + + + L+ + VE +Q ++
Sbjct: 478 GFGEWIDSIV----EFSSNLQNMNIDISAFSCIAALAMVT-ERHGLKEPKRVEELQNKIV 532
Query: 433 AALLDYTMCNYP--QQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
L D+ N + +LL +LPE+R + Q + ++Y L VP
Sbjct: 533 NCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVP 583
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 121 bits (303), Expect = 2e-27
Identities = 51/85 (60%), Positives = 61/85 (71%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
E C VCGD + HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 300 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 359
Query: 97 FQKCLSVGMKLEAVRADRMRGGRNK 121
FQKCLSVGM E VR D ++G R +
Sbjct: 360 FQKCLSVGMVKEVVRTDSLKGRRGR 384
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 121 bits (303), Expect = 2e-27
Identities = 51/85 (60%), Positives = 61/85 (71%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
E C VCGD + HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 289 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 348
Query: 97 FQKCLSVGMKLEAVRADRMRGGRNK 121
FQKCLSVGM E VR D ++G R +
Sbjct: 349 FQKCLSVGMVKEVVRTDSLKGRRGR 373
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 121 bits (303), Expect = 2e-27
Identities = 51/85 (60%), Positives = 61/85 (71%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
E C VCGD + HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 289 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 348
Query: 97 FQKCLSVGMKLEAVRADRMRGGRNK 121
FQKCLSVGM E VR D ++G R +
Sbjct: 349 FQKCLSVGMVKEVVRTDSLKGRRGR 373
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 121 bits (303), Expect = 2e-27
Identities = 51/85 (60%), Positives = 61/85 (71%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
E C VCGD + HYG+ TCE CKGFFKRTVQ N +Y C+ N+NC +DK +R RC YCR
Sbjct: 289 EGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 348
Query: 97 FQKCLSVGMKLEAVRADRMRGGRNK 121
FQKCLSVGM E VR D ++G R +
Sbjct: 349 FQKCLSVGMVKEVVRTDSLKGRRGR 373
>gi|45545429 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 118 bits (295), Expect = 1e-26
Identities = 61/139 (43%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
+ LC VCGD SGYHYG+ +CE+CK FFKRT+Q N Y+C C+I K +RK C CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 97 FQKCLSVGMKLEAVRADRMRGGRNKF-------GPMYKRDRALKQQKKALIRANGLKLEA 149
F KCL VGM E VR DR+RGGR K+ Y + ++ KK + L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 150 MSQVIQAMPSDLTISSAIQ 168
+ I AMP S I+
Sbjct: 222 EPEKIYAMPDPTVPDSDIK 240
Score = 108 bits (270), Expect = 1e-23
Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 19/249 (7%)
Query: 248 QTSSPASIPH--LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 305
Q PA P+ ++ LL EP+ KI A + S + L+T +C +AD+
Sbjct: 202 QLVQPAKKPYNKIVSHLLVAEPE------KIYA-MPDPTVPDSDIKALTT---LCDLADR 251
Query: 306 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQV 365
L I+ WA+ F L + DQM LLQ+ W E+LIL +YR + E LV
Sbjct: 252 ELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE----LVYAD-- 305
Query: 366 DYSIIASQAG-ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLV 424
DY + Q+ A L +L + +LV K +S++ ++ EFV LK + L + D ++E+ + V
Sbjct: 306 DYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAV 365
Query: 425 EGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNN 484
+ +Q+ ++ AL DY + + + G++L+ LP +R S +A ++ Y L G VP +
Sbjct: 366 QKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHK 425
Query: 485 LLIEMLHAK 493
L +EML AK
Sbjct: 426 LFLEMLEAK 434
>gi|45545427 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 118 bits (295), Expect = 1e-26
Identities = 61/139 (43%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
+ LC VCGD SGYHYG+ +CE+CK FFKRT+Q N Y+C C+I K +RK C CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 97 FQKCLSVGMKLEAVRADRMRGGRNKF-------GPMYKRDRALKQQKKALIRANGLKLEA 149
F KCL VGM E VR DR+RGGR K+ Y + ++ KK + L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 150 MSQVIQAMPSDLTISSAIQ 168
+ I AMP S I+
Sbjct: 222 EPEKIYAMPDPTVPDSDIK 240
Score = 108 bits (270), Expect = 1e-23
Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 19/249 (7%)
Query: 248 QTSSPASIPH--LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 305
Q PA P+ ++ LL EP+ KI A + S + L+T +C +AD+
Sbjct: 202 QLVQPAKKPYNKIVSHLLVAEPE------KIYA-MPDPTVPDSDIKALTT---LCDLADR 251
Query: 306 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQV 365
L I+ WA+ F L + DQM LLQ+ W E+LIL +YR + E LV
Sbjct: 252 ELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE----LVYAD-- 305
Query: 366 DYSIIASQAG-ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLV 424
DY + Q+ A L +L + +LV K +S++ ++ EFV LK + L + D ++E+ + V
Sbjct: 306 DYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAV 365
Query: 425 EGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNN 484
+ +Q+ ++ AL DY + + + G++L+ LP +R S +A ++ Y L G VP +
Sbjct: 366 QKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHK 425
Query: 485 LLIEMLHAK 493
L +EML AK
Sbjct: 426 LFLEMLEAK 434
>gi|45545433 estrogen-related receptor gamma isoform 1 [Homo
sapiens]
Length = 458
Score = 118 bits (295), Expect = 1e-26
Identities = 61/139 (43%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
+ LC VCGD SGYHYG+ +CE+CK FFKRT+Q N Y+C C+I K +RK C CR
Sbjct: 125 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 184
Query: 97 FQKCLSVGMKLEAVRADRMRGGRNKF-------GPMYKRDRALKQQKKALIRANGLKLEA 149
F KCL VGM E VR DR+RGGR K+ Y + ++ KK + L A
Sbjct: 185 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 244
Query: 150 MSQVIQAMPSDLTISSAIQ 168
+ I AMP S I+
Sbjct: 245 EPEKIYAMPDPTVPDSDIK 263
Score = 108 bits (270), Expect = 1e-23
Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 19/249 (7%)
Query: 248 QTSSPASIPH--LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 305
Q PA P+ ++ LL EP+ KI A + S + L+T +C +AD+
Sbjct: 225 QLVQPAKKPYNKIVSHLLVAEPE------KIYA-MPDPTVPDSDIKALTT---LCDLADR 274
Query: 306 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQV 365
L I+ WA+ F L + DQM LLQ+ W E+LIL +YR + E LV
Sbjct: 275 ELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE----LVYAD-- 328
Query: 366 DYSIIASQAG-ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLV 424
DY + Q+ A L +L + +LV K +S++ ++ EFV LK + L + D ++E+ + V
Sbjct: 329 DYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAV 388
Query: 425 EGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNN 484
+ +Q+ ++ AL DY + + + G++L+ LP +R S +A ++ Y L G VP +
Sbjct: 389 QKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHK 448
Query: 485 LLIEMLHAK 493
L +EML AK
Sbjct: 449 LFLEMLEAK 457
>gi|197209821 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 118 bits (295), Expect = 1e-26
Identities = 61/139 (43%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
+ LC VCGD SGYHYG+ +CE+CK FFKRT+Q N Y+C C+I K +RK C CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 97 FQKCLSVGMKLEAVRADRMRGGRNKF-------GPMYKRDRALKQQKKALIRANGLKLEA 149
F KCL VGM E VR DR+RGGR K+ Y + ++ KK + L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 150 MSQVIQAMPSDLTISSAIQ 168
+ I AMP S I+
Sbjct: 222 EPEKIYAMPDPTVPDSDIK 240
Score = 108 bits (270), Expect = 1e-23
Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 19/249 (7%)
Query: 248 QTSSPASIPH--LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 305
Q PA P+ ++ LL EP+ KI A + S + L+T +C +AD+
Sbjct: 202 QLVQPAKKPYNKIVSHLLVAEPE------KIYA-MPDPTVPDSDIKALTT---LCDLADR 251
Query: 306 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQV 365
L I+ WA+ F L + DQM LLQ+ W E+LIL +YR + E LV
Sbjct: 252 ELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE----LVYAD-- 305
Query: 366 DYSIIASQAG-ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLV 424
DY + Q+ A L +L + +LV K +S++ ++ EFV LK + L + D ++E+ + V
Sbjct: 306 DYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAV 365
Query: 425 EGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNN 484
+ +Q+ ++ AL DY + + + G++L+ LP +R S +A ++ Y L G VP +
Sbjct: 366 QKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHK 425
Query: 485 LLIEMLHAK 493
L +EML AK
Sbjct: 426 LFLEMLEAK 434
>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 117 bits (294), Expect = 2e-26
Identities = 55/109 (50%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
E C VCGD S HYG+ TCE CKGFFKRTVQ N +Y C+ N++C +DK +R RC +CR
Sbjct: 264 EGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCR 323
Query: 97 FQKCLSVGMKLEAVRADRMRG--GRNKFGPMYKRDRALKQQKKALIRAN 143
FQKCL+VGM E VR D ++G GR P D + +L+RA+
Sbjct: 324 FQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAH 372
Score = 58.9 bits (141), Expect = 1e-08
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 310 IVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSI 369
I +WA F EL DQ LL++ + EL IL YR EG + +G +
Sbjct: 417 IRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRS--KPGEGKLIFCSGLVLHRLQ 474
Query: 370 IASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQE 429
A G ++++++ ++ L SL D F CL LVL + D L+ + VE +Q
Sbjct: 475 CARGFGDWIDSILAFSRSL----HSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQN 529
Query: 430 QVNAALLDYT--MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
++ + L ++ + PQ +LL +LPE+R + Q + ++Y L VP
Sbjct: 530 RIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVP 583
>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 117 bits (294), Expect = 2e-26
Identities = 55/109 (50%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 37 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCR 96
E C VCGD S HYG+ TCE CKGFFKRTVQ N +Y C+ N++C +DK +R RC +CR
Sbjct: 264 EGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCR 323
Query: 97 FQKCLSVGMKLEAVRADRMRG--GRNKFGPMYKRDRALKQQKKALIRAN 143
FQKCL+VGM E VR D ++G GR P D + +L+RA+
Sbjct: 324 FQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDASPANLLTSLVRAH 372
Score = 58.9 bits (141), Expect = 1e-08
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 310 IVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSI 369
I +WA F EL DQ LL++ + EL IL YR EG + +G +
Sbjct: 417 IRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRS--KPGEGKLIFCSGLVLHRLQ 474
Query: 370 IASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQE 429
A G ++++++ ++ L SL D F CL LVL + D L+ + VE +Q
Sbjct: 475 CARGFGDWIDSILAFSRSL----HSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQN 529
Query: 430 QVNAALLDYT--MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
++ + L ++ + PQ +LL +LPE+R + Q + ++Y L VP
Sbjct: 530 RIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVP 583
>gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Homo
sapiens]
Length = 404
Score = 117 bits (293), Expect = 2e-26
Identities = 70/193 (36%), Positives = 105/193 (54%), Gaps = 5/193 (2%)
Query: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 357
+C++A + LFS VEWAR + FF EL V DQ+ LL+ WSEL +L+ + +H
Sbjct: 202 VCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP--- 258
Query: 358 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 417
L+ + + +A++ + + QE V KL LQ D E+ CLK + LF+ D
Sbjct: 259 -LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACG 317
Query: 418 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 477
L + VE +QE+ AL +Y YP Q ++FG+LLLRLP +RA+ L++ L
Sbjct: 318 LSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLV 377
Query: 478 GDVPYNNLLIEML 490
G P L+ +ML
Sbjct: 378 GKTPIETLIRDML 390
Score = 104 bits (259), Expect = 2e-22
Identities = 43/76 (56%), Positives = 55/76 (72%)
Query: 40 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 99
C VCGDK SG HYG+ TCE CK FFKR+++ N YTC N++CQID+ R +C YCR +K
Sbjct: 56 CVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKK 115
Query: 100 CLSVGMKLEAVRADRM 115
C VGM+ EAV+ R+
Sbjct: 116 CFRVGMRKEAVQRGRI 131
>gi|223555953 nuclear receptor subfamily 2, group F, member 2
isoform c [Homo sapiens]
Length = 261
Score = 117 bits (292), Expect = 3e-26
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 357
+C++A + LFS VEWAR+ FF +L++ DQ+ LL+ WSEL +L+ + +H
Sbjct: 59 ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP--- 115
Query: 358 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 417
L+ + S +++ + + QE V KL++L D E+ CLK +VLF+ D
Sbjct: 116 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 174
Query: 418 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 477
L + VE +QE+ AL +Y YP Q +FG+LLLRLP +R +S E L++ L
Sbjct: 175 LSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 234
Query: 478 GDVPYNNLLIEML 490
G P L+ +ML
Sbjct: 235 GKTPIETLIRDML 247
>gi|223555951 nuclear receptor subfamily 2, group F, member 2
isoform c [Homo sapiens]
Length = 261
Score = 117 bits (292), Expect = 3e-26
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 357
+C++A + LFS VEWAR+ FF +L++ DQ+ LL+ WSEL +L+ + +H
Sbjct: 59 ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP--- 115
Query: 358 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 417
L+ + S +++ + + QE V KL++L D E+ CLK +VLF+ D
Sbjct: 116 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 174
Query: 418 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 477
L + VE +QE+ AL +Y YP Q +FG+LLLRLP +R +S E L++ L
Sbjct: 175 LSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 234
Query: 478 GDVPYNNLLIEML 490
G P L+ +ML
Sbjct: 235 GKTPIETLIRDML 247
>gi|223555949 nuclear receptor subfamily 2, group F, member 2
isoform b [Homo sapiens]
Length = 281
Score = 117 bits (292), Expect = 3e-26
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 357
+C++A + LFS VEWAR+ FF +L++ DQ+ LL+ WSEL +L+ + +H
Sbjct: 79 ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP--- 135
Query: 358 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 417
L+ + S +++ + + QE V KL++L D E+ CLK +VLF+ D
Sbjct: 136 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 194
Query: 418 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 477
L + VE +QE+ AL +Y YP Q +FG+LLLRLP +R +S E L++ L
Sbjct: 195 LSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 254
Query: 478 GDVPYNNLLIEML 490
G P L+ +ML
Sbjct: 255 GKTPIETLIRDML 267
>gi|14149746 nuclear receptor subfamily 2, group F, member 2 isoform
a [Homo sapiens]
Length = 414
Score = 117 bits (292), Expect = 3e-26
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 357
+C++A + LFS VEWAR+ FF +L++ DQ+ LL+ WSEL +L+ + +H
Sbjct: 212 ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP--- 268
Query: 358 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 417
L+ + S +++ + + QE V KL++L D E+ CLK +VLF+ D
Sbjct: 269 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 327
Query: 418 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 477
L + VE +QE+ AL +Y YP Q +FG+LLLRLP +R +S E L++ L
Sbjct: 328 LSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 387
Query: 478 GDVPYNNLLIEML 490
G P L+ +ML
Sbjct: 388 GKTPIETLIRDML 400
Score = 106 bits (264), Expect = 6e-23
Identities = 46/76 (60%), Positives = 54/76 (71%)
Query: 40 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 99
C VCGDK SG HYG TCE CK FFKR+V+ N YTC N+NC ID+ R +C YCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 100 CLSVGMKLEAVRADRM 115
CL VGM+ EAV+ RM
Sbjct: 139 CLKVGMRREAVQRGRM 154
>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
sapiens]
Length = 423
Score = 117 bits (292), Expect = 3e-26
Identities = 68/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 357
+C++A + LFS VEWAR+ FF +L++ DQ+ LL+ WSEL +L+ + +H
Sbjct: 219 ICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAP--- 275
Query: 358 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN 417
L+ + S +++ + + QE V KL++L D E+ CLK +VLF+ D
Sbjct: 276 -LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACG 334
Query: 418 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN 477
L + +E +QE+ AL +Y YP Q +FG+LLLRLP +R +S E L++ L
Sbjct: 335 LSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLV 394
Query: 478 GDVPYNNLLIEML 490
G P L+ +ML
Sbjct: 395 GKTPIETLIRDML 407
Score = 106 bits (264), Expect = 6e-23
Identities = 46/76 (60%), Positives = 54/76 (71%)
Query: 40 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQK 99
C VCGDK SG HYG TCE CK FFKR+V+ N YTC N+NC ID+ R +C YCR +K
Sbjct: 86 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 145
Query: 100 CLSVGMKLEAVRADRM 115
CL VGM+ EAV+ RM
Sbjct: 146 CLKVGMRREAVQRGRM 161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,404,417
Number of Sequences: 37866
Number of extensions: 817678
Number of successful extensions: 2433
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2102
Number of HSP's gapped (non-prelim): 246
length of query: 495
length of database: 18,247,518
effective HSP length: 106
effective length of query: 389
effective length of database: 14,233,722
effective search space: 5536917858
effective search space used: 5536917858
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.