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Search of human proteins with 4503791
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503791 follicle stimulating hormone, beta polypeptide
precursor [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66528995 follicle stimulating hormone, beta polypeptide precu... 290 2e-79
gi|4503791 follicle stimulating hormone, beta polypeptide precur... 290 2e-79
gi|115430099 thyroid stimulating hormone, beta precursor [Homo s... 107 2e-24
gi|4504989 luteinizing hormone beta subunit precursor [Homo sapi... 91 2e-19
gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo... 86 8e-18
gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor... 86 8e-18
gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa... 86 8e-18
gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa... 86 8e-18
gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor... 86 8e-18
gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor... 86 8e-18
gi|161019170 mucin 5AC [Homo sapiens] 36 0.010
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 35 0.021
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.062
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.062
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.062
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.062
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.062
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.062
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 30 0.53
gi|61743980 stabilin 2 precursor [Homo sapiens] 30 0.69
gi|239756622 PREDICTED: polycystic kidney disease 1-like 3 [Homo... 28 2.0
gi|239751108 PREDICTED: polycystic kidney disease 1-like 3 [Homo... 28 2.0
gi|239745596 PREDICTED: polycystin 1-like 3 [Homo sapiens] 28 2.0
gi|31559825 polycystin 1-like 3 [Homo sapiens] 28 2.0
gi|15082222 keratin associated protein 4-1 [Homo sapiens] 28 2.0
gi|21265104 tetraspanin 7 [Homo sapiens] 27 4.5
gi|4758614 integrin, beta-like 1 (with EGF-like repeat domains) ... 27 4.5
gi|21264602 laminin alpha 5 [Homo sapiens] 27 4.5
gi|7657196 zinc finger protein 330 [Homo sapiens] 27 4.5
gi|4507319 surfeit 1 [Homo sapiens] 27 5.8
>gi|66528995 follicle stimulating hormone, beta polypeptide
precursor [Homo sapiens]
Length = 129
Score = 290 bits (742), Expect = 2e-79
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP 60
MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP
Sbjct: 1 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP 60
Query: 61 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS 120
ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS
Sbjct: 61 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS 120
Query: 121 YCSFGEMKE 129
YCSFGEMKE
Sbjct: 121 YCSFGEMKE 129
>gi|4503791 follicle stimulating hormone, beta polypeptide precursor
[Homo sapiens]
Length = 129
Score = 290 bits (742), Expect = 2e-79
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP 60
MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP
Sbjct: 1 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP 60
Query: 61 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS 120
ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS
Sbjct: 61 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS 120
Query: 121 YCSFGEMKE 129
YCSFGEMKE
Sbjct: 121 YCSFGEMKE 129
>gi|115430099 thyroid stimulating hormone, beta precursor [Homo
sapiens]
Length = 138
Score = 107 bits (268), Expect = 2e-24
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 4 LQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PA 61
+ F C +A+ + C T T+ IE+ EC +C++INTT CAGYC TRD+ K P
Sbjct: 7 MSMLFGLTCGQAM--SFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKLFLPK 64
Query: 62 RPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPSY 121
Q CT+++ +Y TV +PGC H ++YPVA C CGKC++D +DC + +Y
Sbjct: 65 YALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAIKTNY 124
Query: 122 CS 123
C+
Sbjct: 125 CT 126
>gi|4504989 luteinizing hormone beta subunit precursor [Homo
sapiens]
Length = 141
Score = 91.3 bits (225), Expect = 2e-19
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKTCTFKELVYETVR 80
C N +A+EKE C CI++NTT CAGYC T V + P Q CT++++ +E++R
Sbjct: 29 CHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIR 88
Query: 81 VPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
+PGC D + ++PVA C CG C ++DC
Sbjct: 89 LPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
>gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo
sapiens]
Length = 165
Score = 85.9 bits (211), Expect = 8e-18
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
Query: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
+R+PGC + + +Y VA C C C +TDC
Sbjct: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
>gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor
[Homo sapiens]
Length = 165
Score = 85.9 bits (211), Expect = 8e-18
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
Query: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
+R+PGC + + +Y VA C C C +TDC
Sbjct: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
>gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
sapiens]
Length = 163
Score = 85.9 bits (211), Expect = 8e-18
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 84
Query: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
+R+PGC + + +Y VA C C C +TDC
Sbjct: 85 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
>gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
sapiens]
Length = 155
Score = 85.9 bits (211), Expect = 8e-18
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 27 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 84
Query: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
+R+PGC + + +Y VA C C C +TDC
Sbjct: 85 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 118
>gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor
[Homo sapiens]
Length = 165
Score = 85.9 bits (211), Expect = 8e-18
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
Query: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
+R+PGC + + +Y VA C C C +TDC
Sbjct: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
>gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor
[Homo sapiens]
Length = 165
Score = 85.9 bits (211), Expect = 8e-18
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD--PARPKIQKTCTFKELVYET 78
C N T+A+EKE C CI++NTT CAGYC T V + PA P++ C ++++ +E+
Sbjct: 29 CRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQV--VCNYRDVRFES 86
Query: 79 VRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
+R+PGC + + +Y VA C C C +TDC
Sbjct: 87 IRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 35.8 bits (81), Expect = 0.010
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 14 KAICCNSCELTNITIAIEK-----EECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKT 68
K CC SCE + + I + C +N T+C G C + + Q T
Sbjct: 5983 KTGCCYSCEEDSCQVRINTTILWHQGCE--TEVNITFCEGSCPGASKYSAEAQAMQHQCT 6040
Query: 69 CTFKELVYETVRVPGCAHHADSLYTYPVATQCHCG 103
C + V+E C + + L+TY A Q CG
Sbjct: 6041 CCQERRVHEETVPLHCPNGSAILHTYTHAVQVLCG 6075
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 34.7 bits (78), Expect = 0.021
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 14 KAICCNSCELTNITIAIEK-----EECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKT 68
K CC SCE + + I + C +N T+C G C + + Q T
Sbjct: 5649 KTGCCYSCEEDSCQVRINTTILWHQGCE--TEVNITFCEGSCPGASKYSAEAQAMQHQCT 5706
Query: 69 CTFKELVYETVRVPGCAHHADSLYTYPVATQCHC 102
C + V+E C + + L+TY +C C
Sbjct: 5707 CCQERRVHEETVPLHCPNGSAILHTYTHVDECGC 5740
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 33.1 bits (74), Expect = 0.062
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 20 SCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLV-YKDPARPKIQKTCTFKELVYET 78
SC+ I + I K ECR +N C G C + + Y + K C L +
Sbjct: 2766 SCKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARFCKCCREVGLQRRS 2825
Query: 79 VRVPGCAHHADSL-YTYPVATQCHC 102
V++ CA +A + YT T C C
Sbjct: 2826 VQL-FCATNATWVPYTVQEPTDCAC 2849
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 33.1 bits (74), Expect = 0.062
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 20 SCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLV-YKDPARPKIQKTCTFKELVYET 78
SC+ I + I K ECR +N C G C + + Y + K C L +
Sbjct: 2838 SCKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARFCKCCREVGLQRRS 2897
Query: 79 VRVPGCAHHADSL-YTYPVATQCHC 102
V++ CA +A + YT T C C
Sbjct: 2898 VQL-FCATNATWVPYTVQEPTDCAC 2921
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 33.1 bits (74), Expect = 0.062
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 20 SCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLV-YKDPARPKIQKTCTFKELVYET 78
SC+ I + I K ECR +N C G C + + Y + K C L +
Sbjct: 2766 SCKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARFCKCCREVGLQRRS 2825
Query: 79 VRVPGCAHHADSL-YTYPVATQCHC 102
V++ CA +A + YT T C C
Sbjct: 2826 VQL-FCATNATWVPYTVQEPTDCAC 2849
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 33.1 bits (74), Expect = 0.062
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 20 SCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLV-YKDPARPKIQKTCTFKELVYET 78
SC+ I + I K ECR +N C G C + + Y + K C L +
Sbjct: 2838 SCKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARFCKCCREVGLQRRS 2897
Query: 79 VRVPGCAHHADSL-YTYPVATQCHC 102
V++ CA +A + YT T C C
Sbjct: 2898 VQL-FCATNATWVPYTVQEPTDCAC 2921
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 33.1 bits (74), Expect = 0.062
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 20 SCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLV-YKDPARPKIQKTCTFKELVYET 78
SC+ I + I K ECR +N C G C + + Y + K C L +
Sbjct: 2766 SCKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARFCKCCREVGLQRRS 2825
Query: 79 VRVPGCAHHADSL-YTYPVATQCHC 102
V++ CA +A + YT T C C
Sbjct: 2826 VQL-FCATNATWVPYTVQEPTDCAC 2849
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 33.1 bits (74), Expect = 0.062
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 20 SCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLV-YKDPARPKIQKTCTFKELVYET 78
SC+ I + I K ECR +N C G C + + Y + K C L +
Sbjct: 2838 SCKKVTIRMTIRKNECRSSTPVNLVSCDGRCPSASIYNYNINTYARFCKCCREVGLQRRS 2897
Query: 79 VRVPGCAHHADSL-YTYPVATQCHC 102
V++ CA +A + YT T C C
Sbjct: 2898 VQL-FCATNATWVPYTVQEPTDCAC 2921
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 30.0 bits (66), Expect = 0.53
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 15 AICCNSC-ELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKTCTFK- 72
A+ C C E T ++ + C + N T C Y+R++VY + K+C K
Sbjct: 22 ALRCYVCPEPTGVSDCVTIATC----TTNETMCKTTLYSREIVYPFQGDSTVTKSCASKC 77
Query: 73 -----ELVYETVRVPGCAHHADSLYTYPVATQCHCG 103
+ + +T+ V C ++ P HCG
Sbjct: 78 KPSDVDGIGQTLPVSCCNTELCNVDGAPALNSLHCG 113
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 29.6 bits (65), Expect = 0.69
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 51 YTRDLVYKDPARPKIQKTC-TFKELVYETVRVPGCA----HHADSLYTYPV-ATQCHCGK 104
Y D Y DP P ++K C Y C + D PV Q + G
Sbjct: 228 YRGDGKYCDPINPCLRKICHPHAHCTYLGPNRHSCTCQEGYRGDGQVCLPVDPCQINFGN 287
Query: 105 CDSDSTDCTVRGLGPSYCSFGE 126
C + ST C G G S+C E
Sbjct: 288 CPTKSTVCKYDGPGQSHCECKE 309
>gi|239756622 PREDICTED: polycystic kidney disease 1-like 3 [Homo
sapiens]
Length = 1732
Score = 28.1 bits (61), Expect = 2.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 5 QFFFLFCCWKAICCNSCELTNITIAIEKEE 34
++ FL CW A+ CEL + I + K E
Sbjct: 837 KWHFLCNCWLAVDLGDCELDRVFIPVSKRE 866
>gi|239751108 PREDICTED: polycystic kidney disease 1-like 3 [Homo
sapiens]
Length = 1731
Score = 28.1 bits (61), Expect = 2.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 5 QFFFLFCCWKAICCNSCELTNITIAIEKEE 34
++ FL CW A+ CEL + I + K E
Sbjct: 837 KWHFLCNCWLAVDLGDCELDRVFIPVSKRE 866
>gi|239745596 PREDICTED: polycystin 1-like 3 [Homo sapiens]
Length = 1731
Score = 28.1 bits (61), Expect = 2.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 5 QFFFLFCCWKAICCNSCELTNITIAIEKEE 34
++ FL CW A+ CEL + I + K E
Sbjct: 837 KWHFLCNCWLAVDLGDCELDRVFIPVSKRE 866
>gi|31559825 polycystin 1-like 3 [Homo sapiens]
Length = 1732
Score = 28.1 bits (61), Expect = 2.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 5 QFFFLFCCWKAICCNSCELTNITIAIEKEE 34
++ FL CW A+ CEL + I + K E
Sbjct: 837 KWHFLCNCWLAVDLGDCELDRVFIPVSKRE 866
>gi|15082222 keratin associated protein 4-1 [Homo sapiens]
Length = 127
Score = 28.1 bits (61), Expect = 2.0
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 11 CCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKTCT 70
CC CC SC +++ + C TT C C R + + RP +
Sbjct: 29 CCQTTCCCPSCVVSSCC----RPSCSQTTCCQTTCCRPSC-CRPVCCQTTCRPSCGVSSC 83
Query: 71 FKELVYETVRVPGC 84
+ L +T P C
Sbjct: 84 CRPLCCQTTCRPSC 97
>gi|21265104 tetraspanin 7 [Homo sapiens]
Length = 249
Score = 26.9 bits (58), Expect = 4.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 11 CCWKAICCNSCELTNITIAIEKEECRFCISINTTW 45
CC CN +L N+T+A K + C + T++
Sbjct: 174 CCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSF 208
>gi|4758614 integrin, beta-like 1 (with EGF-like repeat domains)
[Homo sapiens]
Length = 494
Score = 26.9 bits (58), Expect = 4.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 97 ATQCHCGKCDSDSTDCTVRGLGPSYCSFGE 126
A CHCG+C D++D G G Y F E
Sbjct: 154 AGTCHCGRCKCDNSD----GSGLVYGKFCE 179
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 26.9 bits (58), Expect = 4.5
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 35 CRFCI--SINTTWC-AGYCYTRDLVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADSL 91
C C+ + N +C AG C+ L DPA P+ Q C + V P C
Sbjct: 707 CDTCVPGAYNFPYCEAGSCHPAGLAPVDPALPEAQVPC----MCRAHVEGPSCDRCKPGF 762
Query: 92 YTYPVATQCHCGKCDSD 108
+ + C +C D
Sbjct: 763 WGLSPSNPEGCTRCSCD 779
>gi|7657196 zinc finger protein 330 [Homo sapiens]
Length = 320
Score = 26.9 bits (58), Expect = 4.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 86 HHADSLYTYPVATQCHCGKCDSDSTDCTVRGLG 118
+ +S+ P+ QC KC S+DC ++ G
Sbjct: 56 YFCNSVQKLPICAQCGKTKCMMKSSDCVIKHAG 88
>gi|4507319 surfeit 1 [Homo sapiens]
Length = 300
Score = 26.6 bits (57), Expect = 5.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 72 KELVYETVRVPGCAHHADSLYTYP 95
K L Y V+V GC H+ LY P
Sbjct: 113 KNLEYRPVKVRGCFDHSKELYMMP 136
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.138 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,329,672
Number of Sequences: 37866
Number of extensions: 222792
Number of successful extensions: 639
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 56
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.