Guide to the Human Genome
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Name: SURF1 Sequence: fasta or formatted (300aa) NCBI GI: 4507319
Description:

surfeit 1

Referenced in:

Oxidative Phosphorylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         28           2
 C cysteine            1.0          3           1
 D aspartate           3.0          9           2
 E glutamate           6.3         19           1
 F phenylalanine       3.3         10           1
 G glycine             8.0         24           2
 H histidine           1.7          5           1
 I isoleucine          3.7         11           1
 K lysine              3.7         11           2
 L leucine             9.7         29           3
 M methionine          2.3          7           2
 N asparagine          3.0          9           2
 P proline             7.3         22           1
 Q glutamine           3.7         11           1
 R arginine            8.7         26           2
 S serine              5.7         17           3
 T threonine           6.0         18           1
 V valine              8.7         26           2
 W tryptophan          2.7          8           1
 Y tyrosine            2.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   surfeit 1 
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.009   Treacher Collins-Franceschetti syndrome 1 isoform c ...
WDR66                 0.007   WD repeat domain 66 
LOC100292884          0.005   PREDICTED: similar to hCG1989907 
LOC100290331          0.005   PREDICTED: hypothetical protein XP_002346713 
LOC100288105          0.005   PREDICTED: hypothetical protein XP_002342609 
LOC100288944          0.005   PREDICTED: hypothetical protein XP_002342529 
KIAA0368              0.005   KIAA0368 protein 
CA9                   0.005   carbonic anhydrase IX precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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