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Search of human proteins with 4502847
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502847 cold inducible RNA binding protein [Homo sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 351 2e-97
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 192 2e-49
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 124 5e-29
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 124 5e-29
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 122 2e-28
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 112 2e-25
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 108 3e-24
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 108 3e-24
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 107 5e-24
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 103 6e-23
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 103 6e-23
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 103 6e-23
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 103 6e-23
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 102 2e-22
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 102 2e-22
gi|9558733 transformer-2 alpha [Homo sapiens] 101 3e-22
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 100 6e-22
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 100 1e-21
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 100 1e-21
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 97 7e-21
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 97 9e-21
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 97 9e-21
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 96 2e-20
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 96 2e-20
gi|55956788 nucleolin [Homo sapiens] 91 5e-19
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 89 1e-18
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 87 7e-18
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 86 2e-17
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 82 2e-16
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 78 4e-15
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 351 bits (900), Expect = 2e-97
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD 120
KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD 120
Query: 121 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE 172
RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE
Sbjct: 121 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATHNE 172
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 192 bits (487), Expect = 2e-49
Identities = 110/171 (64%), Positives = 131/171 (76%), Gaps = 19/171 (11%)
Query: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
M+S+EGKLFVGGL+F+T+EQ+LE FS +G ISEVVVVKDRETQRSRGFGF+TF N + A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 61 KDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD 120
AM AMNG+S+DGRQIRVD AGKS +RG RGG GF G GRGR +SRGGGD
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHAGKS----ARGTRGG-----GF--GAHGRGRSYSRGGGD 109
Query: 121 RGYGGNR-FESRSG----GYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDS 166
+GYG R ++SR G GYG SRD Y+ R+Q GGY DR SGG+YRD+YD+
Sbjct: 110 QGYGSGRYYDSRPGGYGYGYGRSRD-YNGRNQ-GGY-DRYSGGNYRDNYDN 157
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 124 bits (310), Expect = 5e-29
Identities = 80/168 (47%), Positives = 99/168 (58%), Gaps = 13/168 (7%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDR 121
DA MNGKS+DG+ I+V+QA K S R R RG R G G GRG S GG R
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR-GFGAGRGGS--GGTR 120
Query: 122 GYGGNRFESRSGGYGGSRDYYSSRS----------QSGGYSDRSSGGS 159
G GGY + + SSR +SGG S + S S
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPS 168
Score = 43.1 bits (100), Expect = 1e-04
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 120 DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSY 167
D G+ +R + S GYG Y R YSD SGGSYRDSY+SY
Sbjct: 245 DYGHSSSRDDYPSRGYGDRDGYGRDRD----YSDHPSGGSYRDSYESY 288
Score = 33.9 bits (76), Expect = 0.071
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 19/99 (19%)
Query: 89 RSRGYRGGSAGGR---GFFRGGRGRGRGFSRGGGDRGYGGNRFESRSG---GYGGSRDYY 142
R R Y +GG + G R +RG G +R++ S GYGGSRD Y
Sbjct: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSY 327
Query: 143 SSRSQSGGYSDRSSGG------------SYRDSYDSYAT 169
SS S+S YS G Y S DSY++
Sbjct: 328 SS-SRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSS 365
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 124 bits (310), Expect = 5e-29
Identities = 80/168 (47%), Positives = 99/168 (58%), Gaps = 13/168 (7%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDR 121
DA MNGKS+DG+ I+V+QA K S R R RG R G G GRG S GG R
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR-GFGAGRGGS--GGTR 120
Query: 122 GYGGNRFESRSGGYGGSRDYYSSRS----------QSGGYSDRSSGGS 159
G GGY + + SSR +SGG S + S S
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPS 168
Score = 43.1 bits (100), Expect = 1e-04
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 120 DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSY 167
D G+ +R + S GYG Y R YSD SGGSYRDSY+SY
Sbjct: 245 DYGHSSSRDDYPSRGYGDRDGYGRDRD----YSDHPSGGSYRDSYESY 288
Score = 33.9 bits (76), Expect = 0.071
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 19/99 (19%)
Query: 89 RSRGYRGGSAGGR---GFFRGGRGRGRGFSRGGGDRGYGGNRFESRSG---GYGGSRDYY 142
R R Y +GG + G R +RG G +R++ S GYGGSRD Y
Sbjct: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSY 327
Query: 143 SSRSQSGGYSDRSSGG------------SYRDSYDSYAT 169
SS S+S YS G Y S DSY++
Sbjct: 328 SS-SRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSS 365
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 122 bits (305), Expect = 2e-28
Identities = 76/145 (52%), Positives = 91/145 (62%), Gaps = 15/145 (10%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 62 DAMMAMNGKSVDGRQIRVDQAGKSS----------DNRSRGYRGGSAGGRGFFRGGRGRG 111
DA MNGKS+DG+ I+V+QA K S RSRG G GGRG G RG
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPP 123
Query: 112 RGFSRGG--GDRGYGGNRFESRSGG 134
SRGG D GY N S S G
Sbjct: 124 ---SRGGHMDDGGYSMNFNMSSSRG 145
Score = 42.0 bits (97), Expect = 3e-04
Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 131 RSGGYGGSRDYYSSRSQSG--------GYSDRSSGGSYRDSYDSY 167
R G+ SRD Y SR S YSD SGGSYRDSY+SY
Sbjct: 244 RDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESY 288
Score = 31.6 bits (70), Expect = 0.35
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 89 RSRGYRGGSAGGR---GFFRGGRGRGRGFSRGGGDRGYGGNRFESRSG---GYGGSRDYY 142
R R Y +GG + G R +RG G +R++ S GYGGSRD Y
Sbjct: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSY 327
Query: 143 SSRSQSGGYS 152
SS S+S YS
Sbjct: 328 SS-SRSDLYS 336
Score = 28.1 bits (61), Expect = 3.9
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 87 DNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRS 146
D SRGY R G GR R +S D GG+ +S YG SR +R
Sbjct: 254 DYPSRGYSD---------RDGYGRDRDYS----DHPSGGSYRDSYES-YGNSRSAPPTRG 299
Query: 147 QSGGYSDRSSGGSYRDSYDSY 167
Y S Y S D Y
Sbjct: 300 PPPSYGGSSRYDDYSSSRDGY 320
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 112 bits (279), Expect = 2e-25
Identities = 73/153 (47%), Positives = 90/153 (58%), Gaps = 20/153 (13%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +T+E++LE F KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 4 ADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRG----GSAGGRGFFRGGRGRG----RG 113
A MNGKS+DG+ I+V QA K + SR RG S G F RG RG G R
Sbjct: 64 AAARDMNGKSLDGKAIKVAQATKPAFESSR--RGPPPPRSRGRPRFLRGTRGGGGGPRRS 121
Query: 114 FSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRS 146
SRGG D GGY D SR+
Sbjct: 122 PSRGGPD----------DDGGYTADFDLRPSRA 144
Score = 30.0 bits (66), Expect = 1.0
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 112 RGFSRGGG-----DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDS 166
RGF+ G D G+ R + GY RD Y R + Y D S GS+R+ ++S
Sbjct: 229 RGFAPSPGEYTHRDYGHSSVRDDCPLRGYS-DRDGYGGRDRD--YGDHLSRGSHREPFES 285
Query: 167 Y 167
Y
Sbjct: 286 Y 286
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 108 bits (269), Expect = 3e-24
Identities = 64/122 (52%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
GK F+GGL+ +TN+++LE VF KYGQI EV ++KD ET +SRGF F+TFE DAKDA
Sbjct: 8 GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 66 AMNGKSVDGRQIRVDQAGKSSDNRSRGYRG-----GSAGGRGFFRGGRGRGRGFSRGGGD 120
MNGKS+DG+ I+V+QA K S R RG S G RGGRG G G +R
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGR--RGPPPPPRSRGPPRVLRGGRG-GSGGTREPPS 124
Query: 121 RG 122
RG
Sbjct: 125 RG 126
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 108 bits (269), Expect = 3e-24
Identities = 64/122 (52%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
GK F+GGL+ +TN+++LE VF KYGQI EV ++KD ET +SRGF F+TFE DAKDA
Sbjct: 8 GKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 66 AMNGKSVDGRQIRVDQAGKSSDNRSRGYRG-----GSAGGRGFFRGGRGRGRGFSRGGGD 120
MNGKS+DG+ I+V+QA K S R RG S G RGGRG G G +R
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGR--RGPPPPPRSRGPPRVLRGGRG-GSGGTREPPS 124
Query: 121 RG 122
RG
Sbjct: 125 RG 126
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 107 bits (267), Expect = 5e-24
Identities = 72/167 (43%), Positives = 88/167 (52%), Gaps = 17/167 (10%)
Query: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
L V GLS T E+ L +VFSKYG I++V +V D++++RSRGF FV FEN+DDAK+A
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGR---GRGFSRGGGDRGYG 124
NG +DGR+IRVD S R G GR + R R RG+ RG DR Y
Sbjct: 180 NGMELDGRRIRVD---FSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYY 236
Query: 125 GNRFESRSGGYGGSR------DYYSSRSQS-----GGYSDRSSGGSY 160
+ GG GG R Y RS S GGY RS SY
Sbjct: 237 SRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSY 283
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 103 bits (258), Expect = 6e-23
Identities = 70/159 (44%), Positives = 88/159 (55%), Gaps = 5/159 (3%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN DAK
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
Query: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDR 121
+A MNGKS+ G+ I+V+QA K S +S G R A R G R SRGG
Sbjct: 63 NAAKDMNGKSLHGKAIKVEQAKKPS-FQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRG 121
Query: 122 GYGGNRFESRSGGYGGSRDYYSSRS---QSGGYSDRSSG 157
+ GGY SR G S RS G
Sbjct: 122 WLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGG 160
Score = 29.6 bits (65), Expect = 1.3
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 46/128 (35%)
Query: 88 NRSRGYR--GGSAGGRGFFRGGRGRGRGF--------SRGGGDRGYG-GNRFESRSGGYG 136
+R YR G S + RG R R SRG G R YG R ES S GY
Sbjct: 272 SRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYR 331
Query: 137 G------SRDY-------------------YSSRSQS--GGY--------SDRSSGGSYR 161
+RDY +SSR S GY S+ SG SYR
Sbjct: 332 NHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYR 391
Query: 162 DSYDSYAT 169
D+ Y T
Sbjct: 392 DALQRYGT 399
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 103 bits (258), Expect = 6e-23
Identities = 66/154 (42%), Positives = 86/154 (55%), Gaps = 24/154 (15%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN DAK
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
Query: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDR 121
+A MNGKS+ G+ I+V+QA K S F GGR R SR
Sbjct: 63 NAAKDMNGKSLHGKAIKVEQAKKPS----------------FQSGGRRRPPASSRNRSPS 106
Query: 122 GYGGNRFESRSGGYGGSRDYYSSRS---QSGGYS 152
G S G GG+R + S+ GGY+
Sbjct: 107 G----SLRSARGSRGGTRGWLPSQEGHLDDGGYT 136
Score = 29.6 bits (65), Expect = 1.3
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 46/128 (35%)
Query: 88 NRSRGYR--GGSAGGRGFFRGGRGRGRGF--------SRGGGDRGYG-GNRFESRSGGYG 136
+R YR G S + RG R R SRG G R YG R ES S GY
Sbjct: 272 SRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYR 331
Query: 137 G------SRDY-------------------YSSRSQS--GGY--------SDRSSGGSYR 161
+RDY +SSR S GY S+ SG SYR
Sbjct: 332 NHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYR 391
Query: 162 DSYDSYAT 169
D+ Y T
Sbjct: 392 DALQRYGT 399
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 103 bits (258), Expect = 6e-23
Identities = 66/154 (42%), Positives = 86/154 (55%), Gaps = 24/154 (15%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN DAK
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
Query: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDR 121
+A MNGKS+ G+ I+V+QA K S F GGR R SR
Sbjct: 63 NAAKDMNGKSLHGKAIKVEQAKKPS----------------FQSGGRRRPPASSRNRSPS 106
Query: 122 GYGGNRFESRSGGYGGSRDYYSSRS---QSGGYS 152
G S G GG+R + S+ GGY+
Sbjct: 107 G----SLRSARGSRGGTRGWLPSQEGHLDDGGYT 136
Score = 29.6 bits (65), Expect = 1.3
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 46/128 (35%)
Query: 88 NRSRGYR--GGSAGGRGFFRGGRGRGRGF--------SRGGGDRGYG-GNRFESRSGGYG 136
+R YR G S + RG R R SRG G R YG R ES S GY
Sbjct: 272 SRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYR 331
Query: 137 G------SRDY-------------------YSSRSQS--GGY--------SDRSSGGSYR 161
+RDY +SSR S GY S+ SG SYR
Sbjct: 332 NHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYR 391
Query: 162 DSYDSYAT 169
D+ Y T
Sbjct: 392 DALQRYGT 399
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 103 bits (258), Expect = 6e-23
Identities = 66/154 (42%), Positives = 86/154 (55%), Gaps = 24/154 (15%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN DAK
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
Query: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDR 121
+A MNGKS+ G+ I+V+QA K S F GGR R SR
Sbjct: 63 NAAKDMNGKSLHGKAIKVEQAKKPS----------------FQSGGRRRPPASSRNRSPS 106
Query: 122 GYGGNRFESRSGGYGGSRDYYSSRS---QSGGYS 152
G S G GG+R + S+ GGY+
Sbjct: 107 G----SLRSARGSRGGTRGWLPSQEGHLDDGGYT 136
Score = 29.6 bits (65), Expect = 1.3
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 46/128 (35%)
Query: 88 NRSRGYR--GGSAGGRGFFRGGRGRGRGF--------SRGGGDRGYG-GNRFESRSGGYG 136
+R YR G S + RG R R SRG G R YG R ES S GY
Sbjct: 272 SRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYR 331
Query: 137 G------SRDY-------------------YSSRSQS--GGY--------SDRSSGGSYR 161
+RDY +SSR S GY S+ SG SYR
Sbjct: 332 NHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYR 391
Query: 162 DSYDSYAT 169
D+ Y T
Sbjct: 392 DALQRYGT 399
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 102 bits (254), Expect = 2e-22
Identities = 78/217 (35%), Positives = 107/217 (49%), Gaps = 48/217 (22%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN DAK
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
Query: 62 DAMMAMNGKSVDGRQIRVDQAGK-------------SSDNRS-----RGYRGGSAGGRGF 103
+A MNG S+ G+ I+V+QA K SS NRS R RG S G RG+
Sbjct: 63 NAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGW 122
Query: 104 FRGGRG-----------------------RGRGFSRGGGDRGYGGNRFESRSGGYGGSRD 140
G RG GG +RS + GS+
Sbjct: 123 LPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQG 182
Query: 141 YYSSRSQSGGYSD-RSSGGSYRDS-----YDSYATHN 171
S R ++ G R++ S+R+ +D YAT++
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATND 219
Score = 28.5 bits (62), Expect = 3.0
Identities = 31/91 (34%), Positives = 35/91 (38%), Gaps = 36/91 (39%)
Query: 115 SRGGGDRGYG-GNRFESRSGGYGG------SRDY-------------------YSSRSQS 148
SRG G R YG R ES S GY +RDY +SSR S
Sbjct: 309 SRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYS 368
Query: 149 --GGY--------SDRSSGGSYRDSYDSYAT 169
GY S+ SG SYRD+ Y T
Sbjct: 369 YHDGYGEALGRDHSEHLSGSSYRDALQRYGT 399
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 102 bits (254), Expect = 2e-22
Identities = 78/217 (35%), Positives = 107/217 (49%), Gaps = 48/217 (22%)
Query: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
A GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN DAK
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
Query: 62 DAMMAMNGKSVDGRQIRVDQAGK-------------SSDNRS-----RGYRGGSAGGRGF 103
+A MNG S+ G+ I+V+QA K SS NRS R RG S G RG+
Sbjct: 63 NAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGW 122
Query: 104 FRGGRG-----------------------RGRGFSRGGGDRGYGGNRFESRSGGYGGSRD 140
G RG GG +RS + GS+
Sbjct: 123 LPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQG 182
Query: 141 YYSSRSQSGGYSD-RSSGGSYRDS-----YDSYATHN 171
S R ++ G R++ S+R+ +D YAT++
Sbjct: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATND 219
Score = 28.5 bits (62), Expect = 3.0
Identities = 31/91 (34%), Positives = 35/91 (38%), Gaps = 36/91 (39%)
Query: 115 SRGGGDRGYG-GNRFESRSGGYGG------SRDY-------------------YSSRSQS 148
SRG G R YG R ES S GY +RDY +SSR S
Sbjct: 309 SRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYS 368
Query: 149 --GGY--------SDRSSGGSYRDSYDSYAT 169
GY S+ SG SYRD+ Y T
Sbjct: 369 YHDGYGEALGRDHSEHLSGSSYRDALQRYGT 399
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 101 bits (252), Expect = 3e-22
Identities = 73/166 (43%), Positives = 89/166 (53%), Gaps = 25/166 (15%)
Query: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
L V GLS T E+ L +VFS+YG +S V VV D+ T RSRGF FV FE IDD+K+AM
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 68 NGKSVDGRQIRVDQA--------------GKSSDNRSRGYRGGSAGGRGFFRGGRGRGRG 113
NG +DGR+IRVD + G+ + + G GG GG G GGR R
Sbjct: 181 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGG---GGRRRDSY 237
Query: 114 FSRGGGDRGYG-----GNRFESRSGGYGGSRDYYSSRSQSGGYSDR 154
+ R G DRGY R+ RS SR Y SRS+S YS R
Sbjct: 238 YDR-GYDRGYDRYEDYDYRYRRRSPSPYYSR--YRSRSRSRSYSPR 280
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 100 bits (249), Expect = 6e-22
Identities = 65/190 (34%), Positives = 89/190 (46%), Gaps = 33/190 (17%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
K+FVGG+ DT E +L F KYG+I + V++DR++ + RGF FVTF++ D D ++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIVV 185
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY--------------------------RGGSAGG 100
+++G V +A + +S G RGG+ GG
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGG 245
Query: 101 RGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSG---GYSDRSSG 157
RG + GG G RG S GGGD GY G F G YGG Y S G GY ++ G
Sbjct: 246 RGGYGGGGGGSRG-SYGGGDGGYNG--FGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGG 302
Query: 158 GSYRDSYDSY 167
YD Y
Sbjct: 303 YGGGGGYDGY 312
Score = 75.9 bits (185), Expect = 2e-14
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGLSF+T + SL + F K+G +++ VV++D +T+RSRGFGFVT+ +++ DA M
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
VDGR + +A D+ G
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPG 120
Score = 34.7 bits (78), Expect = 0.042
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 94 RGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRF 128
+GGS GGR G G G+ GGG GYG RF
Sbjct: 347 KGGSFGGRS---SGSPYGGGYGSGGGSGGYGSRRF 378
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 99.8 bits (247), Expect = 1e-21
Identities = 70/186 (37%), Positives = 92/186 (49%), Gaps = 26/186 (13%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
K+FVGG+ DT E L F +YG+I + ++ DR + + RGF FVTF++ D+ D ++
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 164
Query: 67 MNGKSVDGRQIRV-------DQAGKSSDNRSRGYRGGSAGGRG--------FFRGGRGRG 111
+V+G V + A SS R R G GGRG F RGG G
Sbjct: 165 QKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSG 224
Query: 112 R---GFSRGGGDRGYGGNRFE--SRSGGYGGSRDYYSSRSQ---SG--GYSDRSSGGSYR 161
R G SRGGG G G+ + GGYGG YS S+ SG GY ++ SG
Sbjct: 225 RGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGS 284
Query: 162 DSYDSY 167
SYDSY
Sbjct: 285 GSYDSY 290
Score = 74.7 bits (182), Expect = 4e-14
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGLSF+T ++SL F ++G +++ VV++D T+RSRGFGFVT+ +++ DA M
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
VDGR + +A D++ G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPG 99
Score = 44.7 bits (104), Expect = 4e-05
Identities = 34/113 (30%), Positives = 40/113 (35%), Gaps = 24/113 (21%)
Query: 69 GKSVDGRQIRVDQAGKSSDNRSRGYRGGSA-------GGRGFFRGGRGRGRGFSRGGGDR 121
G G G+ N+ GY G + GG GF G G G F GG
Sbjct: 257 GPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGF---GGGSGSNFGGGGSYN 313
Query: 122 GYG-------------GNRFESRSGG-YGGSRDYYSSRSQSGGYSDRSSGGSY 160
+G G F RS G YGG Y++ GGY SS SY
Sbjct: 314 DFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSY 366
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 99.8 bits (247), Expect = 1e-21
Identities = 62/163 (38%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
K+FVGG+ DT E L F +YG+I + ++ DR + + RGF FVTF++ D+ D ++
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 164
Query: 67 MNGKSVDGRQIRV-------DQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGG 119
+V+G V + A SS R R G GGRG GG G F RGG
Sbjct: 165 QKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG---GGFGGNDNFGRGGN 221
Query: 120 DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
G GG GGYGGS D Y+ G S+ GGSY D
Sbjct: 222 FSGRGGFGGSRGGGGYGGSGDGYNGFGNDG--SNFGGGGSYND 262
Score = 74.7 bits (182), Expect = 4e-14
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGLSF+T ++SL F ++G +++ VV++D T+RSRGFGFVT+ +++ DA M
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
VDGR + +A D++ G
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 97.1 bits (240), Expect = 7e-21
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 5/166 (3%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLFVGGL D E L + FS++G + + ++ D+++ + RGFGFV F+N DA D
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQN-HDAADKAAV 157
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGG- 125
+ + G ++ V +A D S G GGS RG RGGRGRG G + G +G GG
Sbjct: 158 VKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRG-GRGGRGRGGGRDQNGLSKGGGGG 216
Query: 126 -NRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYATH 170
N + GG GG + Y Y G + + SY+ H
Sbjct: 217 YNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGF-GGFGSYSQH 261
Score = 69.3 bits (168), Expect = 2e-12
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGL+ T+E L F +G +++ VVV + +T+RSR FGFVT+ N+++A DA MA
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAMA 66
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
+ +VDG + + +A D+ G
Sbjct: 67 ASPHAVDGNTVELKRAVSREDSARPG 92
Score = 30.8 bits (68), Expect = 0.60
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 95 GGSAGGRGFFRGGRGRGRGFSRG-GGDRGYGGNRF 128
GG GG G GGR + G GG GYGG+ F
Sbjct: 271 GGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSSF 305
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 96.7 bits (239), Expect = 9e-21
Identities = 69/203 (33%), Positives = 100/203 (49%), Gaps = 44/203 (21%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM- 65
KLFVGG+ DT E L F +YG+I + ++ DR++ + RGFGFVTF++ D ++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 ---AMNGKSVDGR---------QIRVDQAGKS-----SDNRSRG----------YRGGSA 98
+NG + + R +++ ++G+ D+R G +RGGS
Sbjct: 173 KYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSD 232
Query: 99 G---GRGFFRG--GRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYS- 152
G GRGF G G G G G GG GYGG R GGYGG Y +Q GGY
Sbjct: 233 GYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGR-----GGYGGGGPGYG--NQGGGYGG 285
Query: 153 --DRSSGGSY-RDSYDSYATHNE 172
D GG+Y +Y+ + +N+
Sbjct: 286 GYDNYGGGNYGSGNYNDFGNYNQ 308
Score = 75.1 bits (183), Expect = 3e-14
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGLSF+T E+SL + ++G++++ VV++D ++RSRGFGFVTF ++ + DA MA
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV-DAAMA 80
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGG 107
S+DGR + +A ++ G G + F GG
Sbjct: 81 ARPHSIDGRVVEPKRAVAREES---GKPGAHVTVKKLFVGG 118
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 102 GFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDY 141
G F G R G + GGG+ G GG+ SGGYGG Y
Sbjct: 319 GNFGGSRNMGGPY--GGGNYGPGGS---GGSGGYGGRSRY 353
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 96.7 bits (239), Expect = 9e-21
Identities = 69/203 (33%), Positives = 100/203 (49%), Gaps = 44/203 (21%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM- 65
KLFVGG+ DT E L F +YG+I + ++ DR++ + RGFGFVTF++ D ++
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 66 ---AMNGKSVDGR---------QIRVDQAGKS-----SDNRSRG----------YRGGSA 98
+NG + + R +++ ++G+ D+R G +RGGS
Sbjct: 161 KYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSD 220
Query: 99 G---GRGFFRG--GRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYS- 152
G GRGF G G G G G GG GYGG R GGYGG Y +Q GGY
Sbjct: 221 GYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGR-----GGYGGGGPGYG--NQGGGYGG 273
Query: 153 --DRSSGGSY-RDSYDSYATHNE 172
D GG+Y +Y+ + +N+
Sbjct: 274 GYDNYGGGNYGSGNYNDFGNYNQ 296
Score = 75.1 bits (183), Expect = 3e-14
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGLSF+T E+SL + ++G++++ VV++D ++RSRGFGFVTF ++ + DA MA
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV-DAAMA 68
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGG 107
S+DGR + +A ++ G G + F GG
Sbjct: 69 ARPHSIDGRVVEPKRAVAREES---GKPGAHVTVKKLFVGG 106
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 102 GFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDY 141
G F G R G + GGG+ G GG+ SGGYGG Y
Sbjct: 307 GNFGGSRNMGGPY--GGGNYGPGGS---GGSGGYGGRSRY 341
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 95.9 bits (237), Expect = 2e-20
Identities = 60/160 (37%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
K+FVGG+ DT E L F +YG+I + ++ DR + + RGF FVTF++ D+ D ++
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 164
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRG----FSRGGGDRG 122
+V G V +A + S G G F GGRG G G F RGG G
Sbjct: 165 QKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSG 224
Query: 123 YGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
GG GGYGGS D Y+ G S+ GGSY D
Sbjct: 225 RGGFGGSCGGGGYGGSGDGYNGFGNDG--SNFGGGGSYND 262
Score = 74.7 bits (182), Expect = 4e-14
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGLSF+T ++SL F ++G +++ VV++D T+RSRGFGFVT+ +++ DA M
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
VDGR + +A D++ G
Sbjct: 74 TTPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 95.9 bits (237), Expect = 2e-20
Identities = 60/160 (37%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
K+FVGG+ DT E L F +YG+I + ++ DR + + RGF FVTF++ D+ D ++
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 164
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRG----FSRGGGDRG 122
+V G V +A + S G G F GGRG G G F RGG G
Sbjct: 165 QKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSG 224
Query: 123 YGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
GG GGYGGS D Y+ G S+ GGSY D
Sbjct: 225 RGGFGGSCGGGGYGGSGDGYNGFGNDG--SNFGGGGSYND 262
Score = 74.7 bits (182), Expect = 4e-14
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGLSF+T ++SL F ++G +++ VV++D T+RSRGFGFVT+ +++ DA M
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
VDGR + +A D++ G
Sbjct: 74 TTPHKVDGRVVEPKRAVSREDSQRPG 99
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 90.9 bits (224), Expect = 5e-19
Identities = 62/137 (45%), Positives = 77/137 (56%), Gaps = 13/137 (9%)
Query: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
LFV GLS DT E++L++ F G + +V DRET S+GFGFV F + +DAK A AM
Sbjct: 574 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNR 127
+DG ++ +D A + G GG GGRG F GGRG GRG G G RG GG
Sbjct: 631 EDGEIDGNKVTLDWA----KPKGEGGFGGRGGGRGGF-GGRGGGRGGRGGFGGRGRGG-- 683
Query: 128 FESRS---GGYGGSRDY 141
F R GG GG D+
Sbjct: 684 FGGRGGFRGGRGGGGDH 700
Score = 53.9 bits (128), Expect = 7e-08
Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 64/211 (30%)
Query: 3 SDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
S E K L + LS+ E++L++VF K + + V + +S+G+ F+ F + +DAK
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAK 537
Query: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGF------------FRG--- 106
+A+ + N + ++GR IR++ G +R + +G F G
Sbjct: 538 EALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVR 597
Query: 107 ---------GRGRGRGF------------------------------SRGGGDRGYGGNR 127
G +G GF ++ G+ G+GG
Sbjct: 598 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGG-- 655
Query: 128 FESRSGGYGGSRDYYSSRSQSGGYSDRSSGG 158
R GG GG R GG+ R GG
Sbjct: 656 ---RGGGRGGFGGRGGGRGGRGGFGGRGRGG 683
Score = 40.0 bits (92), Expect = 0.001
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
D L L + + L++VF +I +V KD +S+G ++ F+ DA+
Sbjct: 391 DARTLLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDG---KSKGIAYIEFKTEADAEKT 445
Query: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGG 96
G +DGR I + G+ N+ YRGG
Sbjct: 446 FEEKQGTEIDGRSISLYYTGEKGQNQD--YRGG 476
Score = 38.1 bits (87), Expect = 0.004
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
LFVG L+F+ + L+ S +++ VV D +R FG+V FE+ +D + A + +
Sbjct: 309 LFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMTRKFGYVDFESAEDLEKA-LEL 366
Query: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYR 94
G V G +I++++ + R R
Sbjct: 367 TGLKVFGNEIKLEKPKGKDSKKERDAR 393
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 89.4 bits (220), Expect = 1e-18
Identities = 58/127 (45%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGL+ T+E++L+ F KYG I +V ++KDR+T +SRGF FVTFE+ DAK A
Sbjct: 9 KLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARD 68
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY--RGGSAGGRGFFRGGRGRG----RGFSRGGGD 120
MNGK +DG+ I V Q K + SR GS F RG G R S+G D
Sbjct: 69 MNGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGGGSSPQRPPSQGRPD 128
Query: 121 --RGYGG 125
RGY G
Sbjct: 129 DGRGYAG 135
Score = 37.7 bits (86), Expect = 0.005
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 74 GRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGG--DRGYGGNRFESR 131
G + + G+S D SRG+ S GG GR + G D GG+ SR
Sbjct: 713 GHSLDANSGGRSPDTYSRGHDSSSQSDH---YGGGGRSLDANSSGRLPDAYSGGHDSSSR 769
Query: 132 SGGYGGSRDY--YSSRS---QSGGYSDRSSGGSYRDS 163
S YGG Y Y RS SGG S + G + S
Sbjct: 770 SHRYGGGGRYEEYRGRSLDANSGGRSPNAYSGGHNSS 806
Score = 36.6 bits (83), Expect = 0.011
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 74 GRQIRVDQAGKSSDNRSRGYRGGSAG-GRGFFRGGRGR----GRGFSRGGG----DRGYG 124
G + + G+S D S G+ S G+ GG GR GR G D G
Sbjct: 515 GHSLDANSGGRSPDTHSGGHSSSSNSYGQSHRYGGEGRYEYRGRSHDAHSGGCSADAYSG 574
Query: 125 GNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSY 164
G+ S+S YGG Y R +S D +SGG ++Y
Sbjct: 575 GHDSSSQSNRYGGGGCYEEYRGRS---LDANSGGRSPNAY 611
Score = 36.2 bits (82), Expect = 0.014
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 69 GKSVD----GRQIRVDQAGKSSDNRSRGYRGG-------------SAGGRG--FFRGGR- 108
G+S+D GR G S + S Y GG ++GGR + GG
Sbjct: 596 GRSLDANSGGRSPNAYSGGHDSSSWSHRYGGGGRYEEYRGRSLDANSGGRSPDAYSGGHD 655
Query: 109 --GRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDS 166
G+ + GG Y G ++ SGG S D YS S S+R GG Y+
Sbjct: 656 SSGQSNCYGGGGRYEEYRGRLLDANSGGR--SPDAYSGGHDSSSQSNRYGGGG---RYEE 710
Query: 167 YATHN 171
Y H+
Sbjct: 711 YRGHS 715
Score = 36.2 bits (82), Expect = 0.014
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Query: 83 GKSSDNRSRG----------YRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRS 132
G+S D SRG Y + GR F GR + RGG Y G
Sbjct: 866 GRSHDTHSRGRSPDAHSGDHYTEAYSRGRDSFSNSYGRSDHYGRGGCYEEYQGR----SP 921
Query: 133 GGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSY 164
YGG R SS + S G S R GG + Y
Sbjct: 922 NAYGGGRGLNSS-NNSHGRSHRYGGGGRYEEY 952
Score = 35.8 bits (81), Expect = 0.019
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 74 GRQIRVDQAGKSSDNRSRG-----YRGGS--------AGGRGFFRGGRGRGRGFSRGG-G 119
GR G+S+D SRG Y GG GG G + +GR + GG
Sbjct: 428 GRSHEARSGGRSTDAHSRGRSDDAYSGGHDSSSWSDCCGGGGRYEEYQGRSLDANSGGCS 487
Query: 120 DRGY-GGNRFESRSGGYGGSRDYYSSR-----SQSGGYSDRSSGGSYRDSYDSY 167
Y GG+ S S YG Y +R + SGG S + G + S +SY
Sbjct: 488 PEAYSGGHDNSSWSDRYGVGGHYEENRGHSLDANSGGRSPDTHSGGHSSSSNSY 541
Score = 35.4 bits (80), Expect = 0.024
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 74 GRQIRVDQAGKSSDNRSRGYRGGSA----GGRGFFRGGRGRGRGFSRGG-GDRGY-GGNR 127
GR + + +G+ D S G+ S GG G + RGR + GG Y GG+
Sbjct: 745 GRSLDANSSGRLPDAYSGGHDSSSRSHRYGGGGRYEEYRGRSLDANSGGRSPNAYSGGHN 804
Query: 128 FESRSGGYGGSRDYYSSR-----SQSGGYSDRSSGGSYRDSYDSY 167
SR+ G Y +R + SGG+S + G S +SY
Sbjct: 805 SSSRNDPCRGGGRYEENRGHSLDANSGGHSPNAYSGGRDSSSNSY 849
Score = 35.4 bits (80), Expect = 0.024
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 74 GRQIRVDQAGKSSDNRSRGYRGGSAG----GRGFFRGGRGRGRGFSRGG-GDRGYGGNRF 128
GR + + G+S + S G+ S G G + RG + GG Y G R
Sbjct: 784 GRSLDANSGGRSPNAYSGGHNSSSRNDPCRGGGRYEENRGHSLDANSGGHSPNAYSGGRD 843
Query: 129 ES-----RSGGYGGSRDYYSSRSQS------GGYSDRSSGGSYRDSY 164
S RS YGG Y R +S G D SG Y ++Y
Sbjct: 844 SSSNSYDRSHRYGGGGHYEEYRGRSHDTHSRGRSPDAHSGDHYTEAY 890
Score = 33.9 bits (76), Expect = 0.071
Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 22/102 (21%)
Query: 85 SSDNRSRG-----------YRGGS----AGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFE 129
SS+ SR YRG S +GGR G+ + G Y G E
Sbjct: 373 SSNGYSRSDRYGEEGCYEEYRGRSPDAHSGGRNSSSNSYGQSHHYGGEGRYEEYRGRSHE 432
Query: 130 SRSGG-------YGGSRDYYSSRSQSGGYSDRSSGGSYRDSY 164
+RSGG G S D YS S +SD GG + Y
Sbjct: 433 ARSGGRSTDAHSRGRSDDAYSGGHDSSSWSDCCGGGGRYEEY 474
Score = 33.5 bits (75), Expect = 0.093
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 18/90 (20%)
Query: 86 SDNRSRG-----YRGGS----AGGRGFFRGGRGRGRG--FSRGGGDRGYGGNRFESRSGG 134
SD+ RG Y+G S GGRG GR + GG Y G ++ SGG
Sbjct: 904 SDHYGRGGCYEEYQGRSPNAYGGGRGLNSSNNSHGRSHRYGGGGRYEEYRGPSPDAHSGG 963
Query: 135 YGGSRDYYSSRSQSGGYSDRSSGGSYRDSY 164
RD S +S G SDR GG + + Y
Sbjct: 964 ----RD---SSIKSYGLSDRYGGGGHYEEY 986
Score = 32.0 bits (71), Expect = 0.27
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 18/109 (16%)
Query: 74 GRQIRVDQAGKSSDNRSRGYRGGSA----GGRGFFRGGRGRGRGFSRGGG--DRGYGGNR 127
GR + + G+S D S G+ S GG G + RG + GG D G+
Sbjct: 674 GRLLDANSGGRSPDAYSGGHDSSSQSNRYGGGGRYEEYRGHSLDANSGGRSPDTYSRGHD 733
Query: 128 FESRSGGYGGSR------------DYYSSRSQSGGYSDRSSGGSYRDSY 164
S+S YGG D YS S S R GG + Y
Sbjct: 734 SSSQSDHYGGGGRSLDANSSGRLPDAYSGGHDSSSRSHRYGGGGRYEEY 782
Score = 28.9 bits (63), Expect = 2.3
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 85 SSDNRSRGYRGG-SAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYS 143
S D+ + Y GG S+ G+ R R + G Y G ++ SGG S + Y
Sbjct: 358 SRDHSPKAYSGGRSSSSNGYSRSDR-----YGEEGCYEEYRGRSPDAHSGGRNSSSNSYG 412
Query: 144 SRSQSGG------YSDRS----SGGSYRDSY 164
GG Y RS SGG D++
Sbjct: 413 QSHHYGGEGRYEEYRGRSHEARSGGRSTDAH 443
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 87.0 bits (214), Expect = 7e-18
Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 28/188 (14%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
K+FVGGLS DT+E+ +++ F +G+I + + D +T RGF F+T+ + + K + +
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 67 MNGKSVDGR-QIRVDQ---AGKSSDNRSRGYRGGSAGGRGFFRG-GRGRGRGFSRG---- 117
+ G+ +I+V Q + + +G RG +AGGRG RG GRG+G+ +++G
Sbjct: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNY 353
Query: 118 ------------GGDR---GYGGNRFESRS-GGYGGSRDY--YSSRSQSGGYSDRSSGGS 159
GGD+ GYGG + + G YG + Y YS + + G + R GG+
Sbjct: 354 YDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASR-GGGN 412
Query: 160 YRDSYDSY 167
++++Y Y
Sbjct: 413 HQNNYQPY 420
Score = 62.4 bits (150), Expect = 2e-10
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
D+GK+F+GGLS+DT+++ L + S++G++ + + D T RSRGFGFV F++ D
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASV-DK 204
Query: 64 MMAMNGKSVDGRQI 77
++ + +DG+ I
Sbjct: 205 VLELKEHKLDGKLI 218
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 85.5 bits (210), Expect = 2e-17
Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 17/162 (10%)
Query: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
L V L++ T+ +L +VF KYG++ +V + +DR T+ SRGF FV F + DA+DAM AM
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 68 NGKSVDGRQIRVDQA--GKSSDNR-------SRGYRGGSAGGRG--------FFRGGRGR 110
+G +DGR++RV A G+ D+ R Y GG G R R R
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSR 135
Query: 111 GRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYS 152
R SR R +R SRS SR S+S+S S
Sbjct: 136 SRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVS 177
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 82.0 bits (201), Expect = 2e-16
Identities = 57/155 (36%), Positives = 76/155 (49%), Gaps = 24/155 (15%)
Query: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
L V L++ T+ SL +VF KYG++ +V + ++ T+ RGF FV F + DA+DA AM
Sbjct: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
Query: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGG----DRGY 123
+G +DGR++RV A G R R +G RG SRGGG R Y
Sbjct: 76 DGAELDGRELRVQVA--------------RYGRRDLPRSRQGEPRGRSRGGGYGRRSRSY 121
Query: 124 G------GNRFESRSGGYGGSRDYYSSRSQSGGYS 152
G R SRS G SR SR + YS
Sbjct: 122 GRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYS 156
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 77.8 bits (190), Expect = 4e-15
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM- 65
K+FVGG+ DT E L + +YG+ + ++ D+ + + R F FVTF+N D ++
Sbjct: 106 KIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQ 165
Query: 66 ---AMNGKSVDGRQIRVDQ--AGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD 120
+NG + + R+ Q A S RSR G GGRG GG F GG
Sbjct: 166 KYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRG---GGFSGNDNFGHGGNF 222
Query: 121 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
G GG G +GGS D Y+ G + G SY D
Sbjct: 223 SGCGG-----LGGSHGGSADGYNGFGNDG--KNFGGGSSYND 257
Score = 63.5 bits (153), Expect = 8e-11
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
KLF+GGL F+T+++SL ++G ++E VV++D T RSRGFGFV + +++ DA M
Sbjct: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEV-DAAMN 73
Query: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
+ GR + A D++ G
Sbjct: 74 ARPHKMGGRVVEPKTAVSREDSQRPG 99
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,607,855
Number of Sequences: 37866
Number of extensions: 352705
Number of successful extensions: 6463
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 1787
Number of HSP's gapped (non-prelim): 2356
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.