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Search of human proteins with 4502365
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502365 NK3 homeobox 2 [Homo sapiens]
(333 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502365 NK3 homeobox 2 [Homo sapiens] 664 0.0
gi|19923352 NK3 homeobox 1 [Homo sapiens] 123 2e-28
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 115 5e-26
gi|157426823 NK2 homeobox 4 [Homo sapiens] 108 9e-24
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 107 1e-23
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 107 2e-23
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 104 1e-22
gi|157743259 H6 family homeobox 3 [Homo sapiens] 102 5e-22
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 100 3e-21
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 99 7e-21
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] 97 2e-20
gi|31377777 NK2 homeobox 8 [Homo sapiens] 93 4e-19
gi|84570137 homeobox B3 [Homo sapiens] 92 8e-19
gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi... 91 1e-18
gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens] 91 1e-18
gi|70608170 H6 family homeobox 2 [Homo sapiens] 91 2e-18
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 90 2e-18
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 90 2e-18
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 90 2e-18
gi|226437602 NK1 homeobox 2 [Homo sapiens] 84 2e-16
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 82 7e-16
gi|19923391 homeobox D3 [Homo sapiens] 80 2e-15
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 79 4e-15
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 79 6e-15
gi|4503615 even-skipped homeobox 1 [Homo sapiens] 79 7e-15
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 79 7e-15
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 78 1e-14
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi... 78 1e-14
gi|4758168 distal-less homeobox 2 [Homo sapiens] 77 2e-14
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 77 2e-14
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 664 bits (1713), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA 60
MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA
Sbjct: 1 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA 60
Query: 61 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG 120
GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG
Sbjct: 61 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG 120
Query: 121 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG 180
GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG
Sbjct: 121 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG 180
Query: 181 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA 240
AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA
Sbjct: 181 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA 240
Query: 241 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR 300
ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR
Sbjct: 241 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR 300
Query: 301 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ 333
PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
Sbjct: 301 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ 333
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 123 bits (309), Expect = 2e-28
Identities = 86/217 (39%), Positives = 109/217 (50%), Gaps = 48/217 (22%)
Query: 136 KDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPR---GAHVSALCSGAGGGGGSGPAGV 192
+D+ + A R S+ D P E + G R GA L +G +
Sbjct: 32 QDILRDGAQRQGGRTSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEEAET-L 90
Query: 193 AEEEEE--------------------PAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLS 232
AE E E P PK +KRSRAAFSH QV ELER+F+HQ+YLS
Sbjct: 91 AETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLS 150
Query: 233 GPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADL-----LASAPAAKKVAVKVLVR 287
PERA LA +LKLTETQVKIWFQNRRYKTKR+Q++++L +S PA K+
Sbjct: 151 APERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKE-------- 202
Query: 288 DDQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPGWA 322
E SL+ + SY YYPY YC+ W+
Sbjct: 203 ---------EAFSRASLVSVYNSYPYYPYLYCVGSWS 230
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 115 bits (288), Expect = 5e-26
Identities = 72/146 (49%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Query: 190 AGVAEEEEEPAAPKPRKKRS-RAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTET 248
AG + EE PKPR +R R FS AQVFELERRF QRYLS PER LA+SLKLT T
Sbjct: 131 AGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTST 190
Query: 249 QVKIWFQNRRYKTKRRQMAADLLASA----PAAKKVAVKVLVRDDQRQYLPGEVLRPPSL 304
QVKIWFQNRRYK KR++ L A P ++VAV VLVRD + P
Sbjct: 191 QVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPY 250
Query: 305 LPLQPSYYYPYYCLPGWALSTCAAAA 330
+Y Y + G+ S AAAA
Sbjct: 251 SVGASAYSYNSFPAYGYGNSAAAAAA 276
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 108 bits (269), Expect = 9e-24
Identities = 120/361 (33%), Positives = 154/361 (42%), Gaps = 71/361 (19%)
Query: 10 TSFSIQAILNKKEER-----GGL-AAPEGRPAPGGTAASVAA---APAVCCWRLFGERDA 60
T FS+ IL+ EE G + AP G AP G AA+ A P+ + G + +
Sbjct: 9 TPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAATVAGMQPS 68
Query: 61 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG 120
A+ G + A+ A AA T P G GA G+ G
Sbjct: 69 HAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFP---------------HGAMGSYCNG 113
Query: 121 GSLSLGQPVCELAASKDLEEEAA-----GRSDSEMSASVSGDRSPRTEDDGVGPRGAHVS 175
G ++G EL A D A G + +S+S P G A +
Sbjct: 114 GLGNMG----ELPAYTDGMRGGAATGWYGANPDPRYSSISRFMGP-----SAGVNVAGMG 164
Query: 176 ALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPE 235
+L A GP A AA PR+KR R FS AQV+ELERRF Q+YLS PE
Sbjct: 165 SLTGIADAAKSLGPLHAAA-----AAAAPRRKR-RVLFSQAQVYELERRFKQQKYLSAPE 218
Query: 236 RADLAASLKLTETQVKIWFQNRRYKTKR--RQMAADLLAS----------APAAKKVAVK 283
R LA+ + LT TQVKIWFQN RYK KR + AA L P+ ++VAV
Sbjct: 219 REHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVP 278
Query: 284 VLVRDDQ------RQYLPGEV-LRPPSLLP------LQPSYYYPYYCLPGWALSTCAAAA 330
VLV+D + PG+ +PP+ P L PS P PG L+ AAA
Sbjct: 279 VLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSPS--PPALHGPGGGLAALDAAA 336
Query: 331 G 331
G
Sbjct: 337 G 337
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 107 bits (268), Expect = 1e-23
Identities = 80/190 (42%), Positives = 97/190 (51%), Gaps = 21/190 (11%)
Query: 150 MSASVSGDRSPRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS 209
M A G+ P + P G G G G S G +E+ PK R++R
Sbjct: 1 MDAERMGEPQPGL--NAASPLGGGTRVPERGVGNSGDSVRGGRSEQ------PKARQRRK 52
Query: 210 -RAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAA 268
R FS AQV LERRF QRYLS PER LA++L+LT TQVKIWFQNRRYK KR++
Sbjct: 53 PRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDK 112
Query: 269 DL-LASAP-AAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYY----YPYYCLPGWA 322
L LA P ++VAV VLVRD + L P P PS Y PY C G++
Sbjct: 113 SLELAGHPLTPRRVAVPVLVRDGK------PCLGPGPGAPAFPSPYSAAVSPYSCYGGYS 166
Query: 323 LSTCAAAAGT 332
+ A GT
Sbjct: 167 GAPYGAGYGT 176
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 107 bits (266), Expect = 2e-23
Identities = 64/141 (45%), Positives = 80/141 (56%), Gaps = 8/141 (5%)
Query: 193 AEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKI 252
A+ E P A R+++ R FS AQV+ELERRF QRYLS PER LA+ LKLT TQVKI
Sbjct: 127 ADNAERPRAR--RRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKI 184
Query: 253 WFQNRRYKTKRRQMAADL------LASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLP 306
WFQNRRYK KR++ L P A+++AV VLVRD + P +
Sbjct: 185 WFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPAYGVG 244
Query: 307 LQPSYYYPYYCLPGWALSTCA 327
L P Y Y PG+ + C+
Sbjct: 245 LNPYGYNAYPAYPGYGGAACS 265
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 104 bits (259), Expect = 1e-22
Identities = 102/297 (34%), Positives = 126/297 (42%), Gaps = 51/297 (17%)
Query: 76 GTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASG-----AGLAGGSLSLGQ--- 127
G+R + PE D++ A + RR+ G G A L G+L LG
Sbjct: 40 GSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARALLGPGALGLGPRPP 99
Query: 128 ----PVCELAASKDLE--EEAAGRSDSEMSASVSGDRSPRTEDD-----GVGPRGAHVSA 176
P L A G +S S SP T ++ G PRG A
Sbjct: 100 PGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGRAEGAWPRGPGPGA 159
Query: 177 LCSGAGGGGGSGPAGVAEEEEE----PAAPKP----------RKKRSRAAFSHAQVFELE 222
+ A GPA EE E PAA RKK++R FS +QVF+LE
Sbjct: 160 VQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLE 219
Query: 223 RRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLA---SAPAAKK 279
F+ +RYLS ERA LAASL+LTETQVKIWFQNRR K K RQ+AA+L A S P A++
Sbjct: 220 STFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWK-RQLAAELEAASLSPPGAQR 278
Query: 280 -VAVKVLVRDDQR-------------QYLPGEVLRPPSLLPLQPSYYYPYYCLPGWA 322
V V VL + P PP LL + YP P A
Sbjct: 279 LVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAA 335
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 102 bits (254), Expect = 5e-22
Identities = 106/308 (34%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 12 FSIQAILNKKEERGGLAAPEGRP------APGGTAASVAAAPAVCCWRLFGERDAGALGG 65
FSI+ +LN R P+ +P AP AA+ AAA A GAL G
Sbjct: 31 FSIKNLLNGDHHR---PPPKPQPPPRTLFAPASAAAAAAAAAAAAA--------KGALEG 79
Query: 66 AEDSLLAS-----------PAGTRTAAGRTAESPEGWDSDSALSE--------ENESRRR 106
A L+ PA E W L+ E +
Sbjct: 80 AAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKAL 139
Query: 107 CADARGASGAGLAGGS-LSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDD 165
D+ ASG L P + SK +E SDSE S G+ +P
Sbjct: 140 LRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKK-EGEAAP----- 193
Query: 166 GVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRF 225
G GA V A + A G G E++PA RKK++R FS +QVF+LE F
Sbjct: 194 --GAAGASVGA--AAATPGAEDWKKGAESPEKKPAC---RKKKTRTVFSRSQVFQLESTF 246
Query: 226 NHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADL----LASAPAAKKVA 281
+ +RYLS ERA LAASL LTETQVKIWFQNRR K K RQ+AA+L L+ A A + V
Sbjct: 247 DMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWK-RQLAAELEAANLSHAAAQRIVR 305
Query: 282 VKVLVRDD 289
V +L ++
Sbjct: 306 VPILYHEN 313
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 99.8 bits (247), Expect = 3e-21
Identities = 102/306 (33%), Positives = 128/306 (41%), Gaps = 62/306 (20%)
Query: 10 TSFSIQAIL-----NKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCW------------ 52
TSFS+ IL N + R L P PA AS APA
Sbjct: 43 TSFSVLDILDPNKFNSRRRRCVLLGPVA-PAACAPCASAPCAPAPAASGRPPRAEELERR 101
Query: 53 RLFGERDAGALGG----AEDSLLASPAGTRTAAGRTA----ESPEGWDSDSALSEENESR 104
L G GA G A D A A T G ++ SP D +E++
Sbjct: 102 ALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDE 161
Query: 105 RRCAD---ARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPR 161
+ ARGA A GG L C+ AA D + G + E +A + SP
Sbjct: 162 DEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDA---SPGATVDEAAAPGPRENSPV 218
Query: 162 TEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS------------ 209
+ GP G + A GG G+ P G A A KP++KR+
Sbjct: 219 AQ----GPPGG------AAAPGGAGTTPQGTA------TAAKPKRKRTGSDSKSGKPRRA 262
Query: 210 RAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAAD 269
R AF++ Q+ LE +F RYLS ER +LA SL LTETQVKIWFQNRR K K++ AD
Sbjct: 263 RTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 322
Query: 270 LLASAP 275
SAP
Sbjct: 323 --TSAP 326
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 98.6 bits (244), Expect = 7e-21
Identities = 102/306 (33%), Positives = 127/306 (41%), Gaps = 62/306 (20%)
Query: 10 TSFSIQAIL-----NKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCW------------ 52
TSFS+ IL N + R L P PA AS APA
Sbjct: 446 TSFSVLDILDPNKFNSRRRRCVLLGPVA-PAACAPCASAPCAPAPAASGRPPRAEELERR 504
Query: 53 RLFGERDAGALGG----AEDSLLASPAGTRTAAGRTA----ESPEGWDSDSALSEENESR 104
L G GA G A D A A T G ++ SP D +E++
Sbjct: 505 ALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDE 564
Query: 105 RRCAD---ARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPR 161
+ ARGA A GG L C+ AA D + G + E +A + SP
Sbjct: 565 DEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDA---SPGATVDEAAAPGPRENSPV 621
Query: 162 TEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS------------ 209
GP G + A GG G+ P G A A KP++KR+
Sbjct: 622 AP----GPPGG------AAAPGGAGTTPQGTA------TAAKPKRKRTGSDSKSGKPRRA 665
Query: 210 RAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAAD 269
R AF++ Q+ LE +F RYLS ER +LA SL LTETQVKIWFQNRR K K++ AD
Sbjct: 666 RTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 725
Query: 270 LLASAP 275
SAP
Sbjct: 726 --TSAP 729
>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
Length = 273
Score = 97.4 bits (241), Expect = 2e-20
Identities = 83/231 (35%), Positives = 105/231 (45%), Gaps = 59/231 (25%)
Query: 77 TRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGL--AGGSLSLGQPVCE--- 131
T G AE PE EENE A G G G A SL L P +
Sbjct: 21 TNDEEGSVAEGPE---------EENEGPEPAKRA-GPLGQGALDAVQSLPLKNPFYDSSD 70
Query: 132 ------LAASKDLEEEAAG-------RSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALC 178
LA+++ L+ G + S S S D SP ++D P
Sbjct: 71 NPYTRWLASTEGLQYSLHGLAAGAPPQDSSSKSPEPSADESP--DNDKETP--------- 119
Query: 179 SGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERAD 238
GGGG +G +K++ R FS AQ +ELERRF QRYLS PER
Sbjct: 120 ---GGGGDAG----------------KKRKRRVLFSKAQTYELERRFRQQRYLSAPEREH 160
Query: 239 LAASLKLTETQVKIWFQNRRYKTKRRQMAADL-LASAPAAKKVAVKVLVRD 288
LA+ ++LT TQVKIWFQN RYK KR + + + P+ ++VAV VLVRD
Sbjct: 161 LASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEVTPLPSPRRVAVPVLVRD 211
>gi|31377777 NK2 homeobox 8 [Homo sapiens]
Length = 239
Score = 92.8 bits (229), Expect = 4e-19
Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 11/103 (10%)
Query: 199 PAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRR 258
P + ++K+ R FS AQ ELERRF QRYLS PER LA+ L+LT TQVKIWFQN R
Sbjct: 77 PGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVKIWFQNHR 136
Query: 259 YKTKRRQ-----------MAADLLASAPAAKKVAVKVLVRDDQ 290
YK KR + +A+L A+ ++V V VLVRD Q
Sbjct: 137 YKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQ 179
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 91.7 bits (226), Expect = 8e-19
Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Query: 108 ADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGV 167
A S + GG G P C + L ++ S + SP T +
Sbjct: 95 APTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCG 154
Query: 168 GPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNH 227
G G G+GGGGG G G ++ P + KR+R A++ AQ+ ELE+ F+
Sbjct: 155 GGGGGGGGGGSGGSGGGGGGGGGG---DKSPPGSAA--SKRARTAYTSAQLVELEKEFHF 209
Query: 228 QRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASA 274
RYL P R ++A L L+E Q+KIWFQNRR K K+ Q A L +S+
Sbjct: 210 NRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSS 256
>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
sapiens]
Length = 401
Score = 91.3 bits (225), Expect = 1e-18
Identities = 47/82 (57%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 183 GGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAAS 242
G GG G G + P PR+KR R FS AQV+ELERRF Q+YLS PER LA+
Sbjct: 169 GMGGLGSLGDVSKNMAPLPSAPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASM 227
Query: 243 LKLTETQVKIWFQNRRYKTKRR 264
+ LT TQVKIWFQN RYK KR+
Sbjct: 228 IHLTPTQVKIWFQNHRYKMKRQ 249
>gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]
Length = 371
Score = 91.3 bits (225), Expect = 1e-18
Identities = 47/82 (57%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 183 GGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAAS 242
G GG G G + P PR+KR R FS AQV+ELERRF Q+YLS PER LA+
Sbjct: 139 GMGGLGSLGDVSKNMAPLPSAPRRKR-RVLFSQAQVYELERRFKQQKYLSAPEREHLASM 197
Query: 243 LKLTETQVKIWFQNRRYKTKRR 264
+ LT TQVKIWFQN RYK KR+
Sbjct: 198 IHLTPTQVKIWFQNHRYKMKRQ 219
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 90.5 bits (223), Expect = 2e-18
Identities = 65/168 (38%), Positives = 88/168 (52%), Gaps = 42/168 (25%)
Query: 183 GGGGSGPAGVA------------EEEEE---------PAAPKPR-----------KKRSR 210
G GGSGP G+ +EE+E P + +PR KK++R
Sbjct: 94 GSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQAGAAKKKTR 153
Query: 211 AAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADL 270
FS +QV++LE F+ +RYLS ERA LA+SL+LTETQVK WFQNRR K K RQ++A+L
Sbjct: 154 TVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWK-RQLSAEL 212
Query: 271 ----LASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYP 314
+A A A V++ ++ RD +P P L YYP
Sbjct: 213 EAANMAHASAQTLVSMPLVFRDSSLLRVP-----VPRSLAFPAPLYYP 255
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 90.1 bits (222), Expect = 2e-18
Identities = 88/271 (32%), Positives = 117/271 (43%), Gaps = 53/271 (19%)
Query: 11 SFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDAGALGGAEDSL 70
SFS+ IL+ ++ A P RPAP S+A E +AG + D +
Sbjct: 19 SFSVLDILDPQKFTRA-ALPAVRPAPREARKSLA------------EVEAGKDASSRDPV 65
Query: 71 LASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVC 130
R E+P G ++L +DAR A+G G S G
Sbjct: 66 ------------RQLETP-GQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGS--- 109
Query: 131 ELAASKDLEEEAAGRSDSEMSASVSG-DRSPRTEDDGVGPRGAHVSAL-CSGAGGGGGSG 188
E +D E+ R + + G RSP P GA S C GGG
Sbjct: 110 EAEEEEDAEDPRRPRLRERAARLLPGLARSPDA------PAGALASGEPCEDGGGGPVRS 163
Query: 189 PAGVAEEEEEPAAPKPRKKR----------SRAAFSHAQVFELERRFNHQRYLSGPERAD 238
P G P +P+PR++R +R AF++ Q+ LE +F RYLS ER +
Sbjct: 164 PPG------SPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217
Query: 239 LAASLKLTETQVKIWFQNRRYKTKRRQMAAD 269
LA SL LTETQVKIWFQNRR K K++ AD
Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQNPGAD 248
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 90.1 bits (222), Expect = 2e-18
Identities = 88/271 (32%), Positives = 117/271 (43%), Gaps = 53/271 (19%)
Query: 11 SFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDAGALGGAEDSL 70
SFS+ IL+ ++ A P RPAP S+A E +AG + D +
Sbjct: 19 SFSVLDILDPQKFTRA-ALPAVRPAPREARKSLA------------EVEAGKDASSRDPV 65
Query: 71 LASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVC 130
R E+P G ++L +DAR A+G G S G
Sbjct: 66 ------------RQLETP-GQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGS--- 109
Query: 131 ELAASKDLEEEAAGRSDSEMSASVSG-DRSPRTEDDGVGPRGAHVSAL-CSGAGGGGGSG 188
E +D E+ R + + G RSP P GA S C GGG
Sbjct: 110 EAEEEEDAEDPRRPRLRERAARLLPGLARSPDA------PAGALASGEPCEDGGGGPVRS 163
Query: 189 PAGVAEEEEEPAAPKPRKKR----------SRAAFSHAQVFELERRFNHQRYLSGPERAD 238
P G P +P+PR++R +R AF++ Q+ LE +F RYLS ER +
Sbjct: 164 PPG------SPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217
Query: 239 LAASLKLTETQVKIWFQNRRYKTKRRQMAAD 269
LA SL LTETQVKIWFQNRR K K++ AD
Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQNPGAD 248
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 90.1 bits (222), Expect = 2e-18
Identities = 88/271 (32%), Positives = 117/271 (43%), Gaps = 53/271 (19%)
Query: 11 SFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDAGALGGAEDSL 70
SFS+ IL+ ++ A P RPAP S+A E +AG + D +
Sbjct: 19 SFSVLDILDPQKFTRA-ALPAVRPAPREARKSLA------------EVEAGKDASSRDPV 65
Query: 71 LASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVC 130
R E+P G ++L +DAR A+G G S G
Sbjct: 66 ------------RQLETP-GQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGS--- 109
Query: 131 ELAASKDLEEEAAGRSDSEMSASVSG-DRSPRTEDDGVGPRGAHVSAL-CSGAGGGGGSG 188
E +D E+ R + + G RSP P GA S C GGG
Sbjct: 110 EAEEEEDAEDPRRPRLRERAARLLPGLARSPDA------PAGALASGEPCEDGGGGPVRS 163
Query: 189 PAGVAEEEEEPAAPKPRKKR----------SRAAFSHAQVFELERRFNHQRYLSGPERAD 238
P G P +P+PR++R +R AF++ Q+ LE +F RYLS ER +
Sbjct: 164 PPG------SPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217
Query: 239 LAASLKLTETQVKIWFQNRRYKTKRRQMAAD 269
LA SL LTETQVKIWFQNRR K K++ AD
Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQNPGAD 248
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 83.6 bits (205), Expect = 2e-16
Identities = 66/189 (34%), Positives = 86/189 (45%), Gaps = 35/189 (18%)
Query: 109 DARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGR------SDSEMSASVSGDRSPRT 162
+AR + AG S PV +L + D AG+ S++E R PR
Sbjct: 45 EARKSLAEVEAGKDASSRDPVRQLE-TPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRL 103
Query: 163 EDDGV-----------GPRGAHVSAL-CSGAGGGGGSGPAGVAEEEEEPAAPKPRKKR-- 208
+ P GA S C GGG P G P +P+PR++R
Sbjct: 104 RERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPG------SPGSPRPRRRRLE 157
Query: 209 --------SRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYK 260
+R AF++ Q+ LE +F RYLS ER +LA SL LTETQVKIWFQNRR K
Sbjct: 158 PNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 217
Query: 261 TKRRQMAAD 269
K++ AD
Sbjct: 218 WKKQNPGAD 226
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 82.0 bits (201), Expect = 7e-16
Identities = 53/146 (36%), Positives = 71/146 (48%), Gaps = 13/146 (8%)
Query: 131 ELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSGAGGGGG---- 186
E S E + + ++ AS E++G G L S AGG G
Sbjct: 173 ETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGP 232
Query: 187 ----SGPAGVAEEEEEPA-----APKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERA 237
G G EE P AP + +R R AF+ Q+ ELE+ F+ ++YLS ER+
Sbjct: 233 KPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERS 292
Query: 238 DLAASLKLTETQVKIWFQNRRYKTKR 263
+A +LKL+E QVKIWFQNRR K KR
Sbjct: 293 QIAHALKLSEVQVKIWFQNRRAKWKR 318
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 80.5 bits (197), Expect = 2e-15
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 190 AGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQ 249
A E E+ + P P KR R A++ AQ+ ELE+ F+ RYL P R ++A L LTE Q
Sbjct: 178 ATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 237
Query: 250 VKIWFQNRRYKTKRRQMAADLLASAPAAKKV--------AVKVLVRDDQRQYLPG---EV 298
+KIWFQNRR K K+ Q A +L S PA++ A + Q +PG +
Sbjct: 238 IKIWFQNRRMKYKKDQKAKGILHS-PASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDA 296
Query: 299 LRPPSLLPLQPSYY 312
PP+ QP+ Y
Sbjct: 297 PSPPAFAKSQPNMY 310
Score = 33.9 bits (76), Expect = 0.21
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 127 QPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALC------SG 180
QP AA+ L+ + G + S S++ R+P +GA ++ C +
Sbjct: 48 QPYPPPAAASSLDTDYPGSACSIQSSAPL--RAP-------AHKGAELNGSCMRPGTGNS 98
Query: 181 AGGGGGSGPAGVAEEEEEPAAPKP 204
GGGGGS P G+ E++ P P P
Sbjct: 99 QGGGGGSQPPGLNSEQQPPQPPPP 122
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 79.3 bits (194), Expect = 4e-15
Identities = 50/109 (45%), Positives = 62/109 (56%), Gaps = 20/109 (18%)
Query: 179 SGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS------------RAAFSHAQVFELERRFN 226
+ A GG G+ P G A A KP++KR+ R AF++ Q+ LE +F
Sbjct: 64 AAAPGGAGTTPQGTA------TAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFK 117
Query: 227 HQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAP 275
RYLS ER +LA SL LTETQVKIWFQNRR K K++ AD SAP
Sbjct: 118 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD--TSAP 164
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 79.0 bits (193), Expect = 6e-15
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 95 SALSEENESRRRCADARGASGAGLAGGSLSLGQPVCE----LAASKDLEEEAAGRSDSEM 150
S +S ESR++ A+ + +G L A++ E G ++S
Sbjct: 90 SEISSAAESRKKPGHYSEAAAEADMSSDVEVGCSALRSPGGLGAAQLKENNGKGYAESGS 149
Query: 151 SASVSGDRSPRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSR 210
+A + S G+ + +L G+GG GGS G + + +R R
Sbjct: 150 AAGTTTSAS-----------GSGLGSLHGGSGGSGGSAALGGSGSGADQV------RRYR 192
Query: 211 AAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMA 267
AF+ Q+ LE+ F + Y+S P R +LAA+L L ET +K+WFQNRR K KR+++A
Sbjct: 193 TAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 249
Score = 31.6 bits (70), Expect = 1.0
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 108 ADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGV 167
A A AS A AG S G C + + AA + + + +
Sbjct: 365 AAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAA---------------L 409
Query: 168 GPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPK 203
G RG G GGGGG+G G ++ AAP+
Sbjct: 410 GSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPR 445
>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
Length = 407
Score = 78.6 bits (192), Expect = 7e-15
Identities = 86/322 (26%), Positives = 128/322 (39%), Gaps = 74/322 (22%)
Query: 13 SIQAILNKKEERGGLAAPEGRPAPG--GTAASVAAAPAVCCWRLFGERDAGALGGAEDSL 70
S +A+ ERGG PE P G G+AA A P V + G G + DSL
Sbjct: 49 SPRAVPPATRERGG-GGPEEEPVDGLAGSAAGPGAEPQVAGAAMLGP---GPPAPSVDSL 104
Query: 71 LASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVC 130
P D++S EE E C P C
Sbjct: 105 SGQG------------QPSSSDTESDFYEEIEVS--CT-------------------PDC 131
Query: 131 ELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSGAGGGGGSGPA 190
++ + +G S++ + + G +P++ G+GGGG G
Sbjct: 132 ATGNAEYQHSKGSG-SEALVGSPNGGSETPKSN---------------GGSGGGGSQGTL 175
Query: 191 GVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQV 250
+ ++ +R R AF+ Q+ LE+ F + Y+S P R +LAA+L L ET +
Sbjct: 176 ACSASDQ--------MRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTI 227
Query: 251 KIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPS 310
K+WFQNRR K KR+++A + PA ++ LP PS LPL
Sbjct: 228 KVWFQNRRMKDKRQRLA--MTWPHPADPAFYTYMMSHAAAAGGLPYPF---PSHLPL--- 279
Query: 311 YYYPYYCLPGWALSTCAAAAGT 332
PYY G ++ A+AA +
Sbjct: 280 ---PYYSPVGLGAASAASAAAS 298
>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
Length = 284
Score = 78.6 bits (192), Expect = 7e-15
Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 9/106 (8%)
Query: 204 PRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR 263
P++K+ R +FS +QV ELERRF Q+YL+ ERA LA +L++T+ QVK WFQNRR K R
Sbjct: 155 PKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKW-R 213
Query: 264 RQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQP 309
RQ A + A A ++ + + Q+ LP LRPP LP P
Sbjct: 214 RQTAEEREAERHRAGRLLLHL-----QQDALP-RPLRPP--LPPDP 251
>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
Length = 291
Score = 77.8 bits (190), Expect = 1e-14
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 204 PRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR 263
P++K+ R +FS Q+ ELE+RF+ Q+YL+ ERA LA SLK+T+ QVK WFQNRR K R
Sbjct: 164 PKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKW-R 222
Query: 264 RQMAADLLASAPAAKKVAVKV 284
RQ A + A A ++ +++
Sbjct: 223 RQTAEEREAERQQASRLMLQL 243
>gi|28912912 NK6 transcription factor related, locus 2 [Homo
sapiens]
Length = 277
Score = 77.8 bits (190), Expect = 1e-14
Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 9/111 (8%)
Query: 186 GSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKL 245
G PAG +++ +KK SR FS Q+F LE+ F +YL+GPERA LA SL +
Sbjct: 134 GPAPAGGVLDKDG------KKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGM 187
Query: 246 TETQVKIWFQNRRYKTKRR---QMAADLLASAPAAKKVAVKVLVRDDQRQY 293
TE+QVK+WFQNRR K ++R +MA+ A+K+ V +D +Y
Sbjct: 188 TESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEY 238
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 77.4 bits (189), Expect = 2e-14
Identities = 76/231 (32%), Positives = 103/231 (44%), Gaps = 42/231 (18%)
Query: 65 GAEDSLLASPAGTRTAAGRT----AESPEGW--------DSDSALSEENESRRRCADARG 112
G DSL+A T+ AA T + P G S S+L + ES
Sbjct: 3 GVFDSLVADMHSTQIAASSTYHQHQQPPSGGGAGPGGNSSSSSSLHKPQESPTLPVSTAT 62
Query: 113 ASGAGL-----AGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGV 167
S AGG G P + + + +A+G ++ SA S D
Sbjct: 63 DSSYYTNQQHPAGGGGGGGSPYAHMGS---YQYQASGLNNVPYSAKSSYDLG-------- 111
Query: 168 GPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAP-------KPRKKRS-RAAFSHAQVF 219
+ +A S A G S PA E E+E P KP+K R R +S Q+
Sbjct: 112 -----YTAAYTSYAPYGTSSSPAN-NEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLA 165
Query: 220 ELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADL 270
L+RRF +YL+ PERA+LAASL LT+TQVKIWFQNRR K K+ + ++
Sbjct: 166 ALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEI 216
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 77.4 bits (189), Expect = 2e-14
Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 4/99 (4%)
Query: 204 PRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR 263
P+KK+ R +F+ Q+ ELE+RF+ Q+YL+ ERA LA +LK+T+ QVK WFQNRR K R
Sbjct: 199 PKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKW-R 257
Query: 264 RQMAADLLASAPAAKKVAVKVLVRDDQR---QYLPGEVL 299
RQ A + A A ++ +++ Q+ Q LP + L
Sbjct: 258 RQTAEEREAERQQANRILLQLQQEAFQKSLAQPLPADPL 296
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,624,540
Number of Sequences: 37866
Number of extensions: 795966
Number of successful extensions: 6789
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 270
Number of HSP's that attempted gapping in prelim test: 5353
Number of HSP's gapped (non-prelim): 1388
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.